Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001636

Physical Location & Seq

Genomic Coordinates Reverse (-)

77888683 .. 77889345

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG550300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCCGGCTGGACATGGTCTCCGATCACGAACCAGAGACTTGTTCTCTAGGGCCTTCAGGAAGAAGGGTTACATCCCACTCTCGACTTACCTGAAGACCTACCGGATCGGCTATTTCGTCGACGTCAAGGTCAATGGCGCCATCCACAACGGTATGCCCCACAAGTTCTACCACGGCAGCACAGGTCTCGTCTGGAACGTCACCAAGAGGATCCATGTGCTTGTGGAGCATGTGCAGCCATCAAGGTGCACTGAAGAGTTCCGTTTGAGGAAGGTGAAGAACGATCAGCTGAAGGCAGAGGCCAAGGCTAAGGGTGAGGTCATCAGCACTAAGAGACAGCGAAAGGGTCCCAAGCCCGGTTTCATGGAAGGTGCAGTTATGGAAACTGTTACTCCGATTCCTTATGATGTTGTCAATGATCTTAAGGGAGGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21e

Protein Analysis

145

Amino Acids

16.5

Weight (kDa)

10.15

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21e	PF01157	1 - 70	9.6e-28	Ribosomal protein L21e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09590 AT1G09690 AT1G57660 AT1G57860
fragaria_vesca	FvH4_4g22080 FvH4_4g22080 FvH4_6g21700
malus_domestica	MD12G1053800.v1.1 MD14G1052100.v1.1
prunus_persica	Prupe.1G210800_v2.0.a1 Prupe.7G083200_v2.0.a1 Prupe.7G095700_v2.0.a1
pyrus_communis	pycom12g04680 pycom14g04340
rosa_chinensis	RchiOBHm_Chr3g0478971 RchiOBHm_Chr4g0428341
rosa_laevigata	RLG00000007163 RLG00000008655 RLG00000021006 RLG00000023614
rosa_multiflora	Rmu_co8301713.1_g000001 Rmu_co8364797.1_g000001 Rmu_sc0005645.1_g000005 Rmu_sc0011715.1_g000001 Rmu_sc0031392.1_g000001 Rmu_ssc0000173.1_g000004
rosa_roxburghii	Rroxscaffold_2G00092040 Rroxscaffold_5G00352860 Rroxscaffold_6G00402860
rosa_rugosa	Rorug03G0169900 Rorug04G0224800
rosa_samantha	Rh2BG541800 Rh2DG550300 Rh3AG220900 Rh3BG253100 Rh3CG249600 Rh3DG245600 Rh4AG149700 Rh4AG281600 Rh4BG147000 Rh4BG287200 Rh4CG157000 Rh4CG302800 Rh4DG142700 Rh4DG284300
rosa_wichuraiana	Rw0G000440 Rw2G043640 Rw3G019870 Rw4G024450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AatII	GACGTC	1 cut(s)	126
AccB1I	GGYRCC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	120
AclWI	GGATC	3 cut(s)	113, 205, 218
AcuI	CTGAAG	4 cut(s)	40, 113, 273, 311
AcyI	GRCGYC	2 cut(s)	123, 138
AfiI	CCNNNNNNNGG	1 cut(s)	356
AflII	CTTAAG	1 cut(s)	422
AjuI	GAANNNNNNNTTGG	2 cut(s)	344, 376
AluBI	AGCT	1 cut(s)	289
AluI	AGCT	1 cut(s)	289
Alw21I	GWGCWC	1 cut(s)	251
Alw26I	GTCTC	4 cut(s)	23, 30, 191, 328
Alw44I	GTGCAC	1 cut(s)	247
AlwI	GGATC	3 cut(s)	113, 205, 218
AoxI	GGCC	2 cut(s)	51, 300
ApaLI	GTGCAC	1 cut(s)	247
ApeKI	GCWGC	2 cut(s)	177, 235
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	2 cut(s)	51, 347
AsuC2I	CCSGG	1 cut(s)	357
AsuHPI	GGTGA	3 cut(s)	193, 286, 326
AvaII	GGWCC	1 cut(s)	347
BaeGI	GKGCMC	1 cut(s)	251
BamHI	GGATCC	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	137
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	251
BbvI	GCAGC	2 cut(s)	189, 247
BccI	CCATC	2 cut(s)	149, 247
BceAI	ACGGC	1 cut(s)	190
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BcnI	CCSGG	1 cut(s)	357
BcoDI	GTCTC	4 cut(s)	23, 30, 191, 328
BfaI	CTAG	2 cut(s)	48, 436
BfoI	RGCGCY	1 cut(s)	141
BfrI	CTTAAG	1 cut(s)	422
BisI	GCNGC	2 cut(s)	178, 236
BlsI	GCNGC	2 cut(s)	179, 237
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	1 cut(s)	347
BmgT120I	GGNCC	2 cut(s)	51, 347
BmiI	GGNNCC	4 cut(s)	139, 212, 348, 349
BmrFI	CCNGG	1 cut(s)	357
BpiI	GAAGAC	1 cut(s)	101
Bpu10I	CCTNAGC	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	357
BsaHI	GRCGYC	2 cut(s)	123, 138
BsaI	GGTCTC	2 cut(s)	23, 191
BsaJI	CCNNGG	2 cut(s)	172, 303
BsaWI	WCCGGW	1 cut(s)	102
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 376, 406
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse118I	RCCGGY	1 cut(s)	4
BseDI	CCNNGG	2 cut(s)	172, 303
BseGI	GGATG	2 cut(s)	72, 141
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseSI	GKGCMC	1 cut(s)	251
BseXI	GCAGC	2 cut(s)	189, 247
BsgI	GTGCAG	2 cut(s)	254, 393
BshFI	GGCC	2 cut(s)	53, 302
BshNI	GGYRCC	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	251
BsiSI	CCGG	3 cut(s)	5, 103, 357
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	4 cut(s)	23, 30, 191, 328
BsmFI	GGGAC	1 cut(s)	333
BsnI	GGCC	2 cut(s)	53, 302
Bso31I	GGTCTC	2 cut(s)	23, 191
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp143I	GATC	5 cut(s)	23, 105, 210, 283, 418
BspANI	GGCC	2 cut(s)	53, 302
BspLI	GGNNCC	4 cut(s)	139, 212, 348, 349
BspPI	GGATC	3 cut(s)	113, 205, 218
BspT107I	GGYRCC	1 cut(s)	137
BspTI	CTTAAG	1 cut(s)	422
BspTNI	GGTCTC	2 cut(s)	23, 191
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	172, 303
BssMI	GATC	5 cut(s)	23, 105, 210, 283, 418
BssNI	GRCGYC	2 cut(s)	123, 138
BssT1I	CCWWGG	1 cut(s)	303
Bst4CI	ACNGT	2 cut(s)	152, 388
Bst6I	CTCTTC	1 cut(s)	249
BstACI	GRCGYC	2 cut(s)	123, 138
BstAFI	CTTAAG	1 cut(s)	422
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	309, 330
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	2 cut(s)	72, 141
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	5 cut(s)	26, 108, 213, 286, 421
BstMAI	GTCTC	4 cut(s)	23, 30, 191, 328
BstMBI	GATC	5 cut(s)	23, 105, 210, 283, 418
BstMWI	GCNNNNNNNGC	2 cut(s)	226, 235
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	355
BstSLI	GKGCMC	1 cut(s)	251
BstV1I	GCAGC	2 cut(s)	189, 247
BstV2I	GAAGAC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
BsuRI	GGCC	2 cut(s)	53, 302
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	72, 141
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	2 cut(s)	51, 347
CviAII	CATG	4 cut(s)	14, 215, 230, 364
CviJI	RGCY	8 cut(s)	8, 53, 111, 238, 289, 302, 308, 355
CviKI_1	RGCY	8 cut(s)	8, 53, 111, 238, 289, 302, 308, 355
DdeI	CTNAG	2 cut(s)	309, 330
DinI	GGCGCC	1 cut(s)	139
DpnI	GATC	5 cut(s)	25, 107, 212, 285, 420
DpnII	GATC	5 cut(s)	23, 105, 210, 283, 418
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	303
Eco31I	GGTCTC	2 cut(s)	23, 191
Eco47I	GGWCC	1 cut(s)	347
Eco57I	CTGAAG	4 cut(s)	40, 113, 273, 311
EcoO109I	RGGNCCY	2 cut(s)	51, 347
EcoT14I	CCWWGG	1 cut(s)	303
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	4 cut(s)	17, 218, 233, 367
FaiI	YATR	7 cut(s)	15, 155, 216, 231, 365, 380, 405
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	4 cut(s)	13, 214, 229, 363
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	178, 236
FokI	GGATG	2 cut(s)	59, 128
Fsp4HI	GCNGC	2 cut(s)	178, 236
FspBI	CTAG	2 cut(s)	48, 436
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	2 cut(s)	178, 236
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	2 cut(s)	53, 302
HapII	CCGG	3 cut(s)	5, 103, 357
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	2 cut(s)	123, 138
Hin1II	CATG	4 cut(s)	17, 218, 233, 367
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	1 cut(s)	397
HpaII	CCGG	3 cut(s)	5, 103, 357
HphI	GGTGA	3 cut(s)	193, 286, 326
Hpy166II	GTNNAC	2 cut(s)	121, 249
Hpy188I	TCNGA	2 cut(s)	23, 396
Hpy188III	TCNNGA	4 cut(s)	27, 58, 82, 193
Hpy8I	GTNNAC	2 cut(s)	121, 249
Hpy99I	CGWCG	2 cut(s)	122, 125
HpyAV	CCTTC	5 cut(s)	58, 64, 265, 286, 362
HpyCH4III	ACNGT	2 cut(s)	152, 388
HpyCH4IV	ACGT	2 cut(s)	123, 198
HpyCH4V	TGCA	3 cut(s)	235, 249, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	226, 235
HpyF3I	CTNAG	2 cut(s)	309, 330
HpySE526I	ACGT	2 cut(s)	123, 198
Hsp92I	GRCGYC	2 cut(s)	123, 138
Hsp92II	CATG	4 cut(s)	17, 218, 233, 367
HspAI	GCGC	1 cut(s)	138
KasI	GGCGCC	1 cut(s)	137
KflI	GGGWCCC	1 cut(s)	347
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	5 cut(s)	23, 105, 210, 283, 418
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	8 cut(s)	18, 43, 46, 104, 116, 168, 178, 370
Lsp1109I	GCAGC	2 cut(s)	189, 247
MaeI	CTAG	2 cut(s)	48, 436
MaeII	ACGT	2 cut(s)	123, 198
MaeIII	GTNAC	4 cut(s)	68, 199, 388, 431
MalI	GATC	5 cut(s)	25, 107, 212, 285, 420
MboI	GATC	5 cut(s)	23, 105, 210, 283, 418
MboII	GAAGA	4 cut(s)	73, 106, 266, 289
MflI	RGATCY	1 cut(s)	210
MhlI	GDGCHC	1 cut(s)	251
Mly113I	GGCGCC	1 cut(s)	138
MnlI	CCTC	5 cut(s)	201, 261, 292, 310, 422
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	1 cut(s)	244
MspA1I	CMGCKG	1 cut(s)	289
MspCI	CTTAAG	1 cut(s)	422
MspI	CCGG	3 cut(s)	5, 103, 357
MspR9I	CCNGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	2 cut(s)	226, 235
NaeI	GCCGGC	1 cut(s)	6
NarI	GGCGCC	1 cut(s)	138
NciI	CCSGG	1 cut(s)	357
NdeII	GATC	5 cut(s)	23, 105, 210, 283, 418
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	4 cut(s)	17, 218, 233, 367
NlaIV	GGNNCC	4 cut(s)	139, 212, 348, 349
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 195
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	397
PflFI	GACNNNGTC	1 cut(s)	15
PkrI	GCNGC	2 cut(s)	179, 237
PluTI	GGCGCC	1 cut(s)	141
PpuMI	RGGWCCY	1 cut(s)	347
Psp5II	RGGWCCY	1 cut(s)	347
PspN4I	GGNNCC	4 cut(s)	139, 212, 348, 349
PspPI	GGNCC	2 cut(s)	51, 347
PspPPI	RGGWCCY	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	210
PsyI	GACNNNGTC	1 cut(s)	15
PvuII	CAGCTG	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	244
SalI	GTCGAC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	2 cut(s)	178, 236
Sau3AI	GATC	5 cut(s)	23, 105, 210, 283, 418
Sau96I	GGNCC	2 cut(s)	51, 347
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	1 cut(s)	251
SfoI	GGCGCC	1 cut(s)	139
SgrDI	CGTCGACG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	244
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
SspDI	GGCGCC	1 cut(s)	137
SspMI	CTAG	2 cut(s)	48, 436
StyD4I	CCNGG	1 cut(s)	355
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	2 cut(s)	152, 388
TaiI	ACGT	2 cut(s)	126, 201
TaqI	TCGA	2 cut(s)	83, 120
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	2 cut(s)	177, 235
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	352
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	1 cut(s)	256
Tth111I	GACNNNGTC	1 cut(s)	15
Vha464I	CTTAAG	1 cut(s)	422
VneI	GTGCAC	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	347
XceI	RCATGY	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	2 cut(s)	48, 436
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.