Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001636

Physical Location & Seq

Genomic Coordinates Reverse (-)

5999576 .. 6001321

Gene Structure 1746 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1053800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCCGGCTGGACACGGTCTCCGTTCCCGGACTCGTGATTTGTTCTCGAGGGCCTTCAGGAAGAAGGGGTACATCCCGCTCTCCACCTACCTCAAGACCTACCGGATCGGCGACCATGTCGATGTCAAGGTTAACGGCGCCGTCCACAAGGGTATGCCTCACAAGTTCTACCACGGCCGTACCGGTCGCGTCTGGAACGTCACCAAGCGCGCCATCGGTGTCGAGATCAACAAGCAGGTCGGAAACAGAATCATCAGGAAGAGGATCCATGTGCGTGTGGAGCATGTGCAGCCATCAAGATGCACCGAAGAATTCCGTTTGAGGAAGATAAAGAATGATCAGCTGAAGGCCGAGGCTAAGGCAAAGGGTGAGGTCATTAGCACCAAGAGGCAGCCAAAGGGACCCAAGCCTGGTTTCAGGGTGGAAGGTGCCGTCATGGAAACCGTTACTCCCATTCCTTATGATGTCGTCAATGATCTTAAAGGAGGGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21e

Protein Analysis

165

Amino Acids

18.72

Weight (kDa)

10.61

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21e	PF01157	1 - 101	2.2e-45	Ribosomal protein L21e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09590 AT1G09690 AT1G57660 AT1G57860
fragaria_vesca	FvH4_4g22080 FvH4_4g22080 FvH4_6g21700
malus_domestica	MD12G1053800.v1.1 MD14G1052100.v1.1
prunus_persica	Prupe.1G210800_v2.0.a1 Prupe.7G083200_v2.0.a1 Prupe.7G095700_v2.0.a1
pyrus_communis	pycom12g04680 pycom14g04340
rosa_chinensis	RchiOBHm_Chr3g0478971 RchiOBHm_Chr4g0428341
rosa_laevigata	RLG00000007163 RLG00000008655 RLG00000021006 RLG00000023614
rosa_multiflora	Rmu_co8301713.1_g000001 Rmu_co8364797.1_g000001 Rmu_sc0005645.1_g000005 Rmu_sc0011715.1_g000001 Rmu_sc0031392.1_g000001 Rmu_ssc0000173.1_g000004
rosa_roxburghii	Rroxscaffold_2G00092040 Rroxscaffold_5G00352860 Rroxscaffold_6G00402860
rosa_rugosa	Rorug03G0169900 Rorug04G0224800
rosa_samantha	Rh2BG541800 Rh2DG550300 Rh3AG220900 Rh3BG253100 Rh3CG249600 Rh3DG245600 Rh4AG149700 Rh4AG281600 Rh4BG147000 Rh4BG287200 Rh4CG157000 Rh4CG302800 Rh4DG142700 Rh4DG284300
rosa_wichuraiana	Rw0G000440 Rw2G043640 Rw3G019870 Rw4G024450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	226
AccB1I	GGYRCC	2 cut(s)	137, 428
AccBSI	CCGCTC	1 cut(s)	79
AccII	CGCG	2 cut(s)	189, 210
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	3 cut(s)	113, 259, 272
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	311
AcuI	CTGAAG	2 cut(s)	40, 365
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	3 cut(s)	71, 181, 491
AfiI	CCNNNNNNNGG	1 cut(s)	410
AgeI	ACCGGT	1 cut(s)	182
AjnI	CCWGG	1 cut(s)	409
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	1 cut(s)	343
AluI	AGCT	1 cut(s)	343
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	3 cut(s)	113, 259, 272
Ama87I	CYCGRG	1 cut(s)	46
AoxI	GGCC	3 cut(s)	51, 175, 348
ApeKI	GCWGC	2 cut(s)	289, 391
ApoI	RAATTY	1 cut(s)	311
ArsI	GACNNNNNNTTYG	2 cut(s)	22, 54
AsiGI	ACCGGT	1 cut(s)	182
AspLEI	GCGC	3 cut(s)	140, 210, 212
AspS9I	GGNCC	2 cut(s)	51, 401
AsuC2I	CCSGG	1 cut(s)	28
AsuHPI	GGTGA	2 cut(s)	193, 380
AvaI	CYCGRG	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	401
BaeI	ACNNNNGTAYC	2 cut(s)	163, 196
BamHI	GGATCC	1 cut(s)	264
BanI	GGYRCC	2 cut(s)	137, 428
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BauI	CACGAG	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	301, 403
BccI	CCATC	2 cut(s)	221, 301
BceAI	ACGGC	5 cut(s)	125, 151, 162, 190, 416
BciT130I	CCWGG	1 cut(s)	411
BclI	TGATCA	1 cut(s)	337
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	23
BfaI	CTAG	1 cut(s)	493
BfoI	RGCGCY	1 cut(s)	141
BfuAI	ACCTGC	1 cut(s)	226
BisI	GCNGC	2 cut(s)	290, 392
BlsI	GCNGC	2 cut(s)	291, 393
Bme1390I	CCNGG	2 cut(s)	28, 411
Bme18I	GGWCC	1 cut(s)	401
BmeT110I	CYCGRG	1 cut(s)	46
BmgT120I	GGNCC	2 cut(s)	51, 401
BmiI	GGNNCC	5 cut(s)	139, 266, 402, 403, 430
BmrFI	CCNGG	2 cut(s)	28, 411
BmsI	GCATC	1 cut(s)	290
Bpu10I	CCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	28
BsaHI	GRCGYC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	172, 351
BsaWI	WCCGGW	2 cut(s)	102, 182
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 433, 463
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse118I	RCCGGY	2 cut(s)	4, 182
BseBI	CCWGG	1 cut(s)	411
BseDI	CCNNGG	2 cut(s)	172, 351
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	410
BsePI	GCGCGC	1 cut(s)	208
BseX3I	CGGCCG	1 cut(s)	175
BseXI	GCAGC	2 cut(s)	301, 403
BsgI	GTGCAG	1 cut(s)	308
Bsh1236I	CGCG	2 cut(s)	189, 210
Bsh1285I	CGRYCG	2 cut(s)	178, 187
BshFI	GGCC	3 cut(s)	53, 177, 350
BshNI	GGYRCC	2 cut(s)	137, 428
BshTI	ACCGGT	1 cut(s)	182
BsiEI	CGRYCG	2 cut(s)	178, 187
BsiHKCI	CYCGRG	1 cut(s)	46
BsiSI	CCGG	4 cut(s)	5, 28, 103, 183
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	414
BsnI	GGCC	3 cut(s)	53, 177, 350
Bso31I	GGTCTC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	46
Bsp143I	GATC	5 cut(s)	105, 225, 264, 337, 475
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	3 cut(s)	53, 177, 350
BspFNI	CGCG	2 cut(s)	189, 210
BspLI	GGNNCC	5 cut(s)	139, 266, 402, 403, 430
BspMI	ACCTGC	1 cut(s)	226
BspPI	GGATC	3 cut(s)	113, 259, 272
BspT107I	GGYRCC	2 cut(s)	137, 428
BspTNI	GGTCTC	1 cut(s)	23
BsrBI	CCGCTC	1 cut(s)	79
BsrFI	RCCGGY	2 cut(s)	4, 182
BssAI	RCCGGY	2 cut(s)	4, 182
BssECI	CCNNGG	2 cut(s)	172, 351
BssHII	GCGCGC	1 cut(s)	208
BssMI	GATC	5 cut(s)	105, 225, 264, 337, 475
BssNI	GRCGYC	1 cut(s)	138
BssSI	CACGAG	1 cut(s)	33
Bst2BI	CACGAG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	2 cut(s)	17, 445
Bst6I	CTCTTC	1 cut(s)	254
BstACI	GRCGYC	1 cut(s)	138
BstC8I	GCNNGC	2 cut(s)	6, 210
BstDEI	CTNAG	1 cut(s)	357
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	72
BstFNI	CGCG	2 cut(s)	189, 210
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	3 cut(s)	140, 210, 212
BstKTI	GATC	5 cut(s)	108, 228, 267, 340, 478
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	5 cut(s)	105, 225, 264, 337, 475
BstMCI	CGRYCG	2 cut(s)	178, 187
BstMWI	GCNNNNNNNGC	2 cut(s)	280, 289
BstNI	CCWGG	1 cut(s)	411
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	2 cut(s)	26, 409
BstUI	CGCG	2 cut(s)	189, 210
BstV1I	GCAGC	2 cut(s)	301, 403
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
BstZI	CGGCCG	1 cut(s)	175
BsuRI	GGCC	3 cut(s)	53, 177, 350
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	72
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	2 cut(s)	6, 210
CfoI	GCGC	3 cut(s)	140, 210, 212
Cfr10I	RCCGGY	2 cut(s)	4, 182
Cfr13I	GGNCC	2 cut(s)	51, 401
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	3 cut(s)	70, 180, 490
CspAI	ACCGGT	1 cut(s)	182
CviAII	CATG	4 cut(s)	116, 269, 284, 436
CviJI	RGCY	9 cut(s)	8, 53, 177, 292, 343, 350, 356, 394, 409
CviKI_1	RGCY	9 cut(s)	8, 53, 177, 292, 343, 350, 356, 394, 409
CviQI	GTAC	3 cut(s)	70, 180, 490
DdeI	CTNAG	1 cut(s)	357
DinI	GGCGCC	1 cut(s)	139
DpnI	GATC	5 cut(s)	107, 227, 266, 339, 477
DpnII	GATC	5 cut(s)	105, 225, 264, 337, 475
EaeI	YGGCCR	1 cut(s)	175
EagI	CGGCCG	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
EclXI	CGGCCG	1 cut(s)	175
Eco31I	GGTCTC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	401
Eco52I	CGGCCG	1 cut(s)	175
Eco57I	CTGAAG	2 cut(s)	40, 365
Eco88I	CYCGRG	1 cut(s)	46
EcoO109I	RGGNCCY	2 cut(s)	51, 401
EcoRI	GAATTC	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	409
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
FaeI	CATG	4 cut(s)	119, 272, 287, 439
FaiI	YATR	6 cut(s)	117, 155, 270, 285, 437, 462
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	4 cut(s)	115, 268, 283, 435
FauI	CCCGC	1 cut(s)	84
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	2 cut(s)	290, 392
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	2 cut(s)	290, 392
FspBI	CTAG	1 cut(s)	493
GlaI	GCGC	3 cut(s)	139, 209, 211
GluI	GCNGC	2 cut(s)	290, 392
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	3 cut(s)	53, 177, 350
HapII	CCGG	4 cut(s)	5, 28, 103, 183
HgaI	GACGC	1 cut(s)	178
HhaI	GCGC	3 cut(s)	140, 210, 212
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	4 cut(s)	119, 272, 287, 439
Hin6I	GCGC	3 cut(s)	138, 208, 210
HinP1I	GCGC	3 cut(s)	138, 208, 210
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	2 cut(s)	31, 249
HpaI	GTTAAC	1 cut(s)	133
HpaII	CCGG	4 cut(s)	5, 28, 103, 183
HphI	GGTGA	2 cut(s)	193, 380
Hpy166II	GTNNAC	2 cut(s)	133, 145
Hpy188I	TCNGA	1 cut(s)	242
Hpy188III	TCNNGA	8 cut(s)	35, 46, 58, 94, 193, 223, 256, 297
Hpy8I	GTNNAC	2 cut(s)	133, 145
HpyAV	CCTTC	4 cut(s)	58, 64, 340, 419
HpyCH4III	ACNGT	2 cut(s)	17, 445
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	2 cut(s)	289, 303
HpyF10VI	GCNNNNNNNGC	2 cut(s)	280, 289
HpyF3I	CTNAG	1 cut(s)	357
HpySE526I	ACGT	1 cut(s)	198
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	4 cut(s)	119, 272, 287, 439
HspAI	GCGC	3 cut(s)	138, 208, 210
KasI	GGCGCC	1 cut(s)	137
KflI	GGGWCCC	1 cut(s)	401
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Ksp22I	TGATCA	1 cut(s)	337
KspAI	GTTAAC	1 cut(s)	133
Kzo9I	GATC	5 cut(s)	105, 225, 264, 337, 475
LmnI	GCTCC	1 cut(s)	280
Lsp1109I	GCAGC	2 cut(s)	301, 403
LweI	GCATC	1 cut(s)	290
MaeI	CTAG	1 cut(s)	493
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	2 cut(s)	199, 445
MalI	GATC	5 cut(s)	107, 227, 266, 339, 477
MbiI	CCGCTC	1 cut(s)	79
MboI	GATC	5 cut(s)	105, 225, 264, 337, 475
MboII	GAAGA	4 cut(s)	73, 271, 320, 337
MflI	RGATCY	1 cut(s)	264
MluCI	AATT	1 cut(s)	311
Mly113I	GGCGCC	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	9 cut(s)	42, 101, 168, 255, 315, 346, 364, 381, 479
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	2 cut(s)	132, 480
MslI	CAYNNNNRTG	3 cut(s)	120, 273, 298
MspA1I	CMGCKG	1 cut(s)	343
MspI	CCGG	4 cut(s)	5, 28, 103, 183
MspR9I	CCNGG	2 cut(s)	28, 411
MvaI	CCWGG	1 cut(s)	411
MvnI	CGCG	2 cut(s)	189, 210
MwoI	GCNNNNNNNGC	2 cut(s)	280, 289
NaeI	GCCGGC	1 cut(s)	6
NarI	GGCGCC	1 cut(s)	138
NciI	CCSGG	1 cut(s)	28
NdeII	GATC	5 cut(s)	105, 225, 264, 337, 475
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	4 cut(s)	119, 272, 287, 439
NlaIV	GGNNCC	5 cut(s)	139, 266, 402, 403, 430
NmeAIII	GCCGAG	1 cut(s)	376
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	287
PaeR7I	CTCGAG	1 cut(s)	46
PauI	GCGCGC	1 cut(s)	208
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	249
PflFI	GACNNNGTC	2 cut(s)	15, 116
PfoI	TCCNGGA	1 cut(s)	26
PinAI	ACCGGT	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	291, 393
PleI	GAGTC	1 cut(s)	25
PluTI	GGCGCC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	25
PpuMI	RGGWCCY	1 cut(s)	401
Psp5II	RGGWCCY	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	5 cut(s)	139, 266, 402, 403, 430
PspPI	GGNCC	2 cut(s)	51, 401
PspPPI	RGGWCCY	1 cut(s)	401
PsuI	RGATCY	1 cut(s)	264
PsyI	GACNNNGTC	2 cut(s)	15, 116
PteI	GCGCGC	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	343
RsaI	GTAC	3 cut(s)	71, 181, 491
RsaNI	GTAC	3 cut(s)	70, 180, 490
RseI	CAYNNNNRTG	3 cut(s)	120, 273, 298
SaqAI	TTAA	2 cut(s)	132, 480
SatI	GCNGC	2 cut(s)	290, 392
Sau3AI	GATC	5 cut(s)	105, 225, 264, 337, 475
Sau96I	GGNCC	2 cut(s)	51, 401
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	2 cut(s)	28, 411
SetI	ASST	9 cut(s)	89, 93, 101, 132, 201, 240, 345, 375, 430
SfaNI	GCATC	1 cut(s)	290
SfoI	GGCGCC	1 cut(s)	139
Sfr274I	CTCGAG	1 cut(s)	46
SinI	GGWCC	1 cut(s)	401
SlaI	CTCGAG	1 cut(s)	46
SmiMI	CAYNNNNRTG	3 cut(s)	120, 273, 298
SmlI	CTYRAG	2 cut(s)	46, 92
SmoI	CTYRAG	2 cut(s)	46, 92
Sse9I	AATT	1 cut(s)	311
SsiI	CCGC	1 cut(s)	77
SspDI	GGCGCC	1 cut(s)	137
SspMI	CTAG	1 cut(s)	493
StyD4I	CCNGG	2 cut(s)	26, 409
TaaI	ACNGT	2 cut(s)	17, 445
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	3 cut(s)	47, 120, 222
TasI	AATT	1 cut(s)	311
TfiI	GAWTC	1 cut(s)	249
Tru1I	TTAA	2 cut(s)	132, 480
Tru9I	TTAA	2 cut(s)	132, 480
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	2 cut(s)	289, 391
Tsp45I	GTSAC	1 cut(s)	199
TspGWI	ACGGA	2 cut(s)	11, 305
Tth111I	GACNNNGTC	2 cut(s)	15, 116
VpaK11BI	GGWCC	1 cut(s)	401
XapI	RAATTY	1 cut(s)	311
XceI	RCATGY	1 cut(s)	287
XhoI	CTCGAG	1 cut(s)	46
XspI	CTAG	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.