Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001636

Physical Location & Seq

Genomic Coordinates Reverse (-)

30261774 .. 30265249

Gene Structure 3476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00352860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGGATTAGCTGCTGTAAAGATGAATTATGTTATCAAAAGAATAGAGATGATACAGGTTGCTCCCTTAGGAGCTTGTGATCTCATAATTCTAGTTGTGGGTAACCAGATTATCGGGAAGAGGATCCATGGGCATGTAGAGCACGGGCAGCCATCAAGGTGCACCGAGGAGTTCCATTTGAGGAAGGAGAAGAACGATCAGCTGAAGGCAGAGGCCAAGGCTAAGGGTGAGGTCATCAACACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21e

Protein Analysis

82

Amino Acids

9.13

Weight (kDa)

9.3

Isoelectric Point (pI)

45.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09590 AT1G09690 AT1G57660 AT1G57860
fragaria_vesca	FvH4_4g22080 FvH4_4g22080 FvH4_6g21700
malus_domestica	MD12G1053800.v1.1 MD14G1052100.v1.1
prunus_persica	Prupe.1G210800_v2.0.a1 Prupe.7G083200_v2.0.a1 Prupe.7G095700_v2.0.a1
pyrus_communis	pycom12g04680 pycom14g04340
rosa_chinensis	RchiOBHm_Chr3g0478971 RchiOBHm_Chr4g0428341
rosa_laevigata	RLG00000007163 RLG00000008655 RLG00000021006 RLG00000023614
rosa_multiflora	Rmu_co8301713.1_g000001 Rmu_co8364797.1_g000001 Rmu_sc0005645.1_g000005 Rmu_sc0011715.1_g000001 Rmu_sc0031392.1_g000001 Rmu_ssc0000173.1_g000004
rosa_roxburghii	Rroxscaffold_2G00092040 Rroxscaffold_5G00352860 Rroxscaffold_6G00402860
rosa_rugosa	Rorug03G0169900 Rorug04G0224800
rosa_samantha	Rh2BG541800 Rh2DG550300 Rh3AG220900 Rh3BG253100 Rh3CG249600 Rh3DG245600 Rh4AG149700 Rh4AG281600 Rh4BG147000 Rh4BG287200 Rh4CG157000 Rh4CG302800 Rh4DG142700 Rh4DG284300
rosa_wichuraiana	Rw0G000440 Rw2G043640 Rw3G019870 Rw4G024450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	118, 131
AcuI	CTGAAG	1 cut(s)	224
AdeI	CACNNNGTG	1 cut(s)	246
AluBI	AGCT	3 cut(s)	11, 74, 202
AluI	AGCT	3 cut(s)	11, 74, 202
Alw21I	GWGCWC	2 cut(s)	144, 164
Alw44I	GTGCAC	1 cut(s)	160
AlwI	GGATC	2 cut(s)	118, 131
AoxI	GGCC	1 cut(s)	213
ApaLI	GTGCAC	1 cut(s)	160
ApeKI	GCWGC	2 cut(s)	11, 148
AsuHPI	GGTGA	1 cut(s)	239
AxyI	CCTNAGG	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	164
BamHI	GGATCC	1 cut(s)	123
Bbv12I	GWGCWC	2 cut(s)	144, 164
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	92
BisI	GCNGC	2 cut(s)	12, 149
BlsI	GCNGC	2 cut(s)	13, 150
BmiI	GGNNCC	1 cut(s)	125
Bpu10I	CCTNAGC	1 cut(s)	222
BsaJI	CCNNGG	3 cut(s)	127, 165, 216
Bse21I	CCTNAGG	1 cut(s)	67
BseDI	CCNNGG	3 cut(s)	127, 165, 216
BseRI	GAGGAG	1 cut(s)	182
BseSI	GKGCMC	1 cut(s)	164
BseXI	GCAGC	1 cut(s)	160
BshFI	GGCC	1 cut(s)	215
BsiHKAI	GWGCWC	2 cut(s)	144, 164
BsnI	GGCC	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	144, 164
Bsp143I	GATC	3 cut(s)	79, 123, 196
Bsp19I	CCATGG	1 cut(s)	127
BspANI	GGCC	1 cut(s)	215
BspLI	GGNNCC	1 cut(s)	125
BspPI	GGATC	2 cut(s)	118, 131
BssECI	CCNNGG	3 cut(s)	127, 165, 216
BssMI	GATC	3 cut(s)	79, 123, 196
BssT1I	CCWWGG	2 cut(s)	127, 216
Bst6I	CTCTTC	1 cut(s)	113
BstDEI	CTNAG	2 cut(s)	67, 222
BstDSI	CCRYGG	1 cut(s)	127
BstEII	GGTNACC	1 cut(s)	101
BstKTI	GATC	3 cut(s)	82, 126, 199
BstMBI	GATC	3 cut(s)	79, 123, 196
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 148
BstNSI	RCATGY	1 cut(s)	137
BstPI	GGTNACC	1 cut(s)	101
BstSLI	GKGCMC	1 cut(s)	164
BstV1I	GCAGC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
Bsu36I	CCTNAGG	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	215
BtgI	CCRYGG	1 cut(s)	127
CviAII	CATG	2 cut(s)	128, 134
CviJI	RGCY	6 cut(s)	11, 74, 151, 202, 215, 221
CviKI_1	RGCY	6 cut(s)	11, 74, 151, 202, 215, 221
DdeI	CTNAG	2 cut(s)	67, 222
DpnI	GATC	3 cut(s)	81, 125, 198
DpnII	GATC	3 cut(s)	79, 123, 196
DraIII	CACNNNGTG	1 cut(s)	246
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco130I	CCWWGG	2 cut(s)	127, 216
Eco57I	CTGAAG	1 cut(s)	224
Eco81I	CCTNAGG	1 cut(s)	67
Eco91I	GGTNACC	1 cut(s)	101
EcoO65I	GGTNACC	1 cut(s)	101
EcoT14I	CCWWGG	2 cut(s)	127, 216
ErhI	CCWWGG	2 cut(s)	127, 216
FaeI	CATG	2 cut(s)	131, 137
FaiI	YATR	4 cut(s)	30, 86, 129, 135
FatI	CATG	2 cut(s)	127, 133
Fnu4HI	GCNGC	2 cut(s)	12, 149
Fsp4HI	GCNGC	2 cut(s)	12, 149
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	2 cut(s)	12, 149
HaeIII	GGCC	1 cut(s)	215
Hin1II	CATG	2 cut(s)	131, 137
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188III	TCNNGA	1 cut(s)	115
Hpy8I	GTNNAC	1 cut(s)	162
HpyAV	CCTTC	2 cut(s)	178, 199
HpyCH4V	TGCA	1 cut(s)	162
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 148
HpyF3I	CTNAG	2 cut(s)	67, 222
Hsp92II	CATG	2 cut(s)	131, 137
Kzo9I	GATC	3 cut(s)	79, 123, 196
LmnI	GCTCC	2 cut(s)	67, 71
LpnPI	CCDG	2 cut(s)	41, 119
Lsp1109I	GCAGC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	3 cut(s)	81, 125, 198
MboI	GATC	3 cut(s)	79, 123, 196
MboII	GAAGA	2 cut(s)	130, 202
MflI	RGATCY	1 cut(s)	123
MhlI	GDGCHC	2 cut(s)	144, 164
MluCI	AATT	2 cut(s)	25, 87
MnlI	CCTC	5 cut(s)	114, 160, 174, 205, 223
MslI	CAYNNNNRTG	2 cut(s)	132, 157
MspA1I	CMGCKG	1 cut(s)	202
MwoI	GCNNNNNNNGC	2 cut(s)	139, 148
NcoI	CCATGG	1 cut(s)	127
NdeII	GATC	3 cut(s)	79, 123, 196
NlaIII	CATG	2 cut(s)	131, 137
NlaIV	GGNNCC	1 cut(s)	125
NspI	RCATGY	1 cut(s)	137
PkrI	GCNGC	2 cut(s)	13, 150
PspEI	GGTNACC	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	123
PvuII	CAGCTG	1 cut(s)	202
RseI	CAYNNNNRTG	2 cut(s)	132, 157
SatI	GCNGC	2 cut(s)	12, 149
Sau3AI	GATC	3 cut(s)	79, 123, 196
SduI	GDGCHC	2 cut(s)	144, 164
SetI	ASST	6 cut(s)	13, 60, 76, 161, 204, 234
SmiMI	CAYNNNNRTG	2 cut(s)	132, 157
Sse9I	AATT	2 cut(s)	25, 87
SspMI	CTAG	1 cut(s)	92
StyI	CCWWGG	2 cut(s)	127, 216
TasI	AATT	2 cut(s)	25, 87
TseI	GCWGC	2 cut(s)	11, 148
TspDTI	ATGAA	1 cut(s)	38
VneI	GTGCAC	1 cut(s)	160
XceI	RCATGY	1 cut(s)	137
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.