Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001636

Physical Location & Seq

Genomic Coordinates Reverse (-)

28254359 .. 28258312

Gene Structure 3954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG142700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCGATGACGACCTTCCGCCGTGGTCCCGTGTCACTTTCTCCACTCAAGGCAATTACCGAGTCCTCACTGAGTTGTTGGAGAGAAAGTGGTCTGGAGGTTGACTTGGAAAGTGGTGAGACTAAATCTGACAGTCAAGAAGATGGAAGTGTAGAGTCCAGTTCCCATGGTTTTTGGTTCCAGTGGTTACTGTGGACAATGCGATTAGCTGCTGTAAAGATGAATTATGTTATCAAAAGAATAGAGATGATACAGGTGGGTAACCGGATTATCAGGAAGAGGATCCATGGGCATGTAGAGCACGGACAGCCATCAAGGTGCACTGAGGAGTTCCATTTGAGGAAGGAGAAGAACGATCAGCTGAAGGCAGAGGCCAAGGCTAAGGGTGAGGTCATCAACACCAAGAGACAGCCAAAGGGTCCCAATCCTGGTTTCATGGTTGAAGGTGCAGTTATGGAAACTGTTGCTCCCATTCCTTATGATGTCGTCAATGATCTTAAGGGAGGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21e

Protein Analysis

170

Amino Acids

19.19

Weight (kDa)

8.53

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09590 AT1G09690 AT1G57660 AT1G57860
fragaria_vesca	FvH4_4g22080 FvH4_4g22080 FvH4_6g21700
malus_domestica	MD12G1053800.v1.1 MD14G1052100.v1.1
prunus_persica	Prupe.1G210800_v2.0.a1 Prupe.7G083200_v2.0.a1 Prupe.7G095700_v2.0.a1
pyrus_communis	pycom12g04680 pycom14g04340
rosa_chinensis	RchiOBHm_Chr3g0478971 RchiOBHm_Chr4g0428341
rosa_laevigata	RLG00000007163 RLG00000008655 RLG00000021006 RLG00000023614
rosa_multiflora	Rmu_co8301713.1_g000001 Rmu_co8364797.1_g000001 Rmu_sc0005645.1_g000005 Rmu_sc0011715.1_g000001 Rmu_sc0031392.1_g000001 Rmu_ssc0000173.1_g000004
rosa_roxburghii	Rroxscaffold_2G00092040 Rroxscaffold_5G00352860 Rroxscaffold_6G00402860
rosa_rugosa	Rorug03G0169900 Rorug04G0224800
rosa_samantha	Rh2BG541800 Rh2DG550300 Rh3AG220900 Rh3BG253100 Rh3CG249600 Rh3DG245600 Rh4AG149700 Rh4AG281600 Rh4BG147000 Rh4BG287200 Rh4CG157000 Rh4CG302800 Rh4DG142700 Rh4DG284300
rosa_wichuraiana	Rw0G000440 Rw2G043640 Rw3G019870 Rw4G024450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	19
AclWI	GGATC	2 cut(s)	277, 290
AcuI	CTGAAG	1 cut(s)	383
AfiI	CCNNNNNNNGG	1 cut(s)	428
AflII	CTTAAG	1 cut(s)	497
AgsI	TTSAA	1 cut(s)	443
AjnI	CCWGG	1 cut(s)	427
AjuI	GAANNNNNNNTTGG	2 cut(s)	416, 448
AluBI	AGCT	2 cut(s)	209, 361
AluI	AGCT	2 cut(s)	209, 361
Alw21I	GWGCWC	2 cut(s)	303, 323
Alw26I	GTCTC	2 cut(s)	113, 400
Alw44I	GTGCAC	1 cut(s)	319
AlwI	GGATC	2 cut(s)	277, 290
AoxI	GGCC	1 cut(s)	372
ApaLI	GTGCAC	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	209
AspS9I	GGNCC	2 cut(s)	26, 419
AsuHPI	GGTGA	2 cut(s)	128, 398
AvaII	GGWCC	2 cut(s)	26, 419
BaeGI	GKGCMC	1 cut(s)	323
BamHI	GGATCC	1 cut(s)	282
Bbv12I	GWGCWC	2 cut(s)	303, 323
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	2 cut(s)	137, 319
BceAI	ACGGC	1 cut(s)	6
BciT130I	CCWGG	1 cut(s)	429
BcoDI	GTCTC	2 cut(s)	113, 400
BfaI	CTAG	1 cut(s)	511
BfrI	CTTAAG	1 cut(s)	497
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
Bme1390I	CCNGG	1 cut(s)	429
Bme18I	GGWCC	2 cut(s)	26, 419
BmgT120I	GGNCC	2 cut(s)	26, 419
BmiI	GGNNCC	5 cut(s)	28, 179, 284, 420, 421
BmrFI	CCNGG	1 cut(s)	429
BpmI	CTGGAG	1 cut(s)	116
Bpu10I	CCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	32
BsaJI	CCNNGG	4 cut(s)	22, 166, 286, 375
BsaWI	WCCGGW	1 cut(s)	264
BsaXI	ACNNNNNCTCC	4 cut(s)	73, 103, 451, 481
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse1I	ACTGG	2 cut(s)	159, 181
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	4 cut(s)	22, 166, 286, 375
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMII	CTCAG	2 cut(s)	62, 315
BseNI	ACTGG	2 cut(s)	159, 181
BseRI	GAGGAG	1 cut(s)	341
BseSI	GKGCMC	1 cut(s)	323
BseXI	GCAGC	1 cut(s)	196
BsgI	GTGCAG	1 cut(s)	468
BshFI	GGCC	1 cut(s)	374
BsiHKAI	GWGCWC	2 cut(s)	303, 323
BsiSI	CCGG	1 cut(s)	265
BslFI	GGGAC	2 cut(s)	12, 405
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	2 cut(s)	113, 400
BsmFI	GGGAC	2 cut(s)	12, 405
BsnI	GGCC	1 cut(s)	374
Bsp1286I	GDGCHC	2 cut(s)	303, 323
Bsp143I	GATC	3 cut(s)	282, 355, 493
Bsp19I	CCATGG	2 cut(s)	166, 286
BspACI	CCGC	1 cut(s)	19
BspANI	GGCC	1 cut(s)	374
BspCNI	CTCAG	2 cut(s)	63, 316
BspLI	GGNNCC	5 cut(s)	28, 179, 284, 420, 421
BspPI	GGATC	2 cut(s)	277, 290
BspTI	CTTAAG	1 cut(s)	497
BsrI	ACTGG	2 cut(s)	159, 181
BssECI	CCNNGG	4 cut(s)	22, 166, 286, 375
BssMI	GATC	3 cut(s)	282, 355, 493
BssT1I	CCWWGG	3 cut(s)	166, 286, 375
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	3 cut(s)	134, 192, 463
Bst6I	CTCTTC	1 cut(s)	272
BstAFI	CTTAAG	1 cut(s)	497
BstDEI	CTNAG	3 cut(s)	71, 324, 381
BstDSI	CCRYGG	3 cut(s)	22, 166, 286
BstEII	GGTNACC	1 cut(s)	260
BstKTI	GATC	3 cut(s)	285, 358, 496
BstMAI	GTCTC	2 cut(s)	113, 400
BstMBI	GATC	3 cut(s)	282, 355, 493
BstMWI	GCNNNNNNNGC	2 cut(s)	298, 307
BstNI	CCWGG	1 cut(s)	429
BstNSI	RCATGY	1 cut(s)	296
BstPI	GGTNACC	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	427
BstSLI	GKGCMC	1 cut(s)	323
BstV1I	GCAGC	1 cut(s)	196
BstX2I	RGATCY	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	374
BtgI	CCRYGG	3 cut(s)	22, 166, 286
BtgZI	GCGATG	1 cut(s)	20
BtsIMutI	CAGTG	3 cut(s)	68, 188, 321
Cfr13I	GGNCC	2 cut(s)	26, 419
CviAII	CATG	4 cut(s)	167, 287, 293, 436
CviJI	RGCY	6 cut(s)	209, 310, 361, 374, 380, 412
CviKI_1	RGCY	6 cut(s)	209, 310, 361, 374, 380, 412
DdeI	CTNAG	3 cut(s)	71, 324, 381
DpnI	GATC	3 cut(s)	284, 357, 495
DpnII	GATC	3 cut(s)	282, 355, 493
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
EciI	GGCGGA	1 cut(s)	8
Eco130I	CCWWGG	3 cut(s)	166, 286, 375
Eco47I	GGWCC	2 cut(s)	26, 419
Eco57I	CTGAAG	1 cut(s)	383
Eco91I	GGTNACC	1 cut(s)	260
EcoO109I	RGGNCCY	1 cut(s)	419
EcoO65I	GGTNACC	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	427
EcoT14I	CCWWGG	3 cut(s)	166, 286, 375
ErhI	CCWWGG	3 cut(s)	166, 286, 375
FaeI	CATG	4 cut(s)	170, 290, 296, 439
FaiI	YATR	7 cut(s)	168, 228, 288, 294, 437, 455, 480
FaqI	GGGAC	2 cut(s)	12, 405
FatI	CATG	4 cut(s)	166, 286, 292, 435
Fnu4HI	GCNGC	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	1 cut(s)	511
GluI	GCNGC	1 cut(s)	210
GsuI	CTGGAG	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	374
HapII	CCGG	1 cut(s)	265
Hin1II	CATG	4 cut(s)	170, 290, 296, 439
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	2 cut(s)	62, 155
HpaII	CCGG	1 cut(s)	265
HphI	GGTGA	2 cut(s)	128, 398
Hpy166II	GTNNAC	3 cut(s)	103, 195, 321
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	3 cut(s)	95, 137, 274
Hpy8I	GTNNAC	3 cut(s)	103, 195, 321
HpyAV	CCTTC	4 cut(s)	25, 337, 358, 437
HpyCH4III	ACNGT	3 cut(s)	134, 192, 463
HpyCH4V	TGCA	2 cut(s)	321, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	298, 307
HpyF3I	CTNAG	3 cut(s)	71, 324, 381
Hsp92II	CATG	4 cut(s)	170, 290, 296, 439
KflI	GGGWCCC	1 cut(s)	419
Kzo9I	GATC	3 cut(s)	282, 355, 493
LmnI	GCTCC	1 cut(s)	472
LpnPI	CCDG	8 cut(s)	80, 172, 194, 239, 259, 278, 414, 441
Lsp1109I	GCAGC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	511
MaeIII	GTNAC	4 cut(s)	33, 186, 260, 506
MalI	GATC	3 cut(s)	284, 357, 495
MboI	GATC	3 cut(s)	282, 355, 493
MboII	GAAGA	3 cut(s)	152, 289, 361
MflI	RGATCY	1 cut(s)	282
MhlI	GDGCHC	2 cut(s)	303, 323
MluCI	AATT	2 cut(s)	54, 223
MlyI	GAGTC	2 cut(s)	71, 164
MmeI	TCCRAC	1 cut(s)	59
MnlI	CCTC	8 cut(s)	76, 91, 273, 319, 333, 364, 382, 497
MseI	TTAA	1 cut(s)	498
MslI	CAYNNNNRTG	2 cut(s)	291, 316
MspA1I	CMGCKG	1 cut(s)	361
MspCI	CTTAAG	1 cut(s)	497
MspI	CCGG	1 cut(s)	265
MspR9I	CCNGG	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	2 cut(s)	298, 307
NcoI	CCATGG	2 cut(s)	166, 286
NdeII	GATC	3 cut(s)	282, 355, 493
NlaIII	CATG	4 cut(s)	170, 290, 296, 439
NlaIV	GGNNCC	5 cut(s)	28, 179, 284, 420, 421
NmuCI	GTSAC	1 cut(s)	33
NspI	RCATGY	1 cut(s)	296
PkrI	GCNGC	1 cut(s)	211
PleI	GAGTC	2 cut(s)	70, 163
PpsI	GAGTC	2 cut(s)	70, 163
PpuMI	RGGWCCY	1 cut(s)	419
Psp5II	RGGWCCY	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	427
PspEI	GGTNACC	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	5 cut(s)	28, 179, 284, 420, 421
PspPI	GGNCC	2 cut(s)	26, 419
PspPPI	RGGWCCY	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	282
PvuII	CAGCTG	1 cut(s)	361
RseI	CAYNNNNRTG	2 cut(s)	291, 316
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	3 cut(s)	282, 355, 493
Sau96I	GGNCC	2 cut(s)	26, 419
SchI	GAGTC	2 cut(s)	71, 164
ScrFI	CCNGG	1 cut(s)	429
SduI	GDGCHC	2 cut(s)	303, 323
SetI	ASST	9 cut(s)	17, 102, 211, 258, 320, 363, 393, 448, 508
SinI	GGWCC	2 cut(s)	26, 419
SmiMI	CAYNNNNRTG	2 cut(s)	291, 316
SmlI	CTYRAG	2 cut(s)	47, 497
SmoI	CTYRAG	2 cut(s)	47, 497
Sse9I	AATT	2 cut(s)	54, 223
SsiI	CCGC	1 cut(s)	19
SspMI	CTAG	1 cut(s)	511
StyD4I	CCNGG	1 cut(s)	427
StyI	CCWWGG	3 cut(s)	166, 286, 375
TaaI	ACNGT	3 cut(s)	134, 192, 463
TasI	AATT	2 cut(s)	54, 223
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	3 cut(s)	75, 188, 328
TseFI	GTSAC	1 cut(s)	33
TseI	GCWGC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	33
TspDTI	ATGAA	2 cut(s)	236, 424
TspGWI	ACGGA	1 cut(s)	318
TspRI	CASTG	3 cut(s)	75, 188, 328
Vha464I	CTTAAG	1 cut(s)	497
VneI	GTGCAC	1 cut(s)	319
VpaK11BI	GGWCC	2 cut(s)	26, 419
XceI	RCATGY	1 cut(s)	296
XspI	CTAG	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.