Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001636

Physical Location & Seq

Genomic Coordinates Reverse (-)

22659689 .. 22662018

Gene Structure 2330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG220900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCCGGCTGGACATGGTCTCCGATCTCGAACCAGAGACTTGTTCTCTAGGGCCTTCAGGAAGAAGGGTTACATCCCGCTCTCGACTTACCTCAAGACCTACCGGATCGGCGACTTCGTCGACGTCAAGGTCAATGGCGCCATCCACAAGGGTATGCCCCACAAGTTCTACCACGGCCGCACAGGTCGCGTCTGGAACGTCACCAAGAGAGCCATCGGAGTTGAGATCAACAAGCAGGTGGGTAACCGAATTATCAGGAAGAGGATCCATGTGCGTGTGGAGCATGTGCAGCCATCCAGGTGCACTGAAGAGTTCCGTTTGAGGAAGGTGAAGAACGATGAGCTGAAGGCAGAGGCCAAGGCTAAGGGTGAGGTCATCAGCACCAAGAGACAGCCAAAGGGTCCCAAGCCCGGTTTCATGGTTGAAGGTGCAGTTATGGAAACTGTTACTCCCATTCCTTATGATGTCGTCAATGATCTTAAGGGAGGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21e

Protein Analysis

164

Amino Acids

18.71

Weight (kDa)

10.44

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21e	PF01157	1 - 101	2.2e-45	Ribosomal protein L21e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09590 AT1G09690 AT1G57660 AT1G57860
fragaria_vesca	FvH4_4g22080 FvH4_4g22080 FvH4_6g21700
malus_domestica	MD12G1053800.v1.1 MD14G1052100.v1.1
prunus_persica	Prupe.1G210800_v2.0.a1 Prupe.7G083200_v2.0.a1 Prupe.7G095700_v2.0.a1
pyrus_communis	pycom12g04680 pycom14g04340
rosa_chinensis	RchiOBHm_Chr3g0478971 RchiOBHm_Chr4g0428341
rosa_laevigata	RLG00000007163 RLG00000008655 RLG00000021006 RLG00000023614
rosa_multiflora	Rmu_co8301713.1_g000001 Rmu_co8364797.1_g000001 Rmu_sc0005645.1_g000005 Rmu_sc0011715.1_g000001 Rmu_sc0031392.1_g000001 Rmu_ssc0000173.1_g000004
rosa_roxburghii	Rroxscaffold_2G00092040 Rroxscaffold_5G00352860 Rroxscaffold_6G00402860
rosa_rugosa	Rorug03G0169900 Rorug04G0224800
rosa_samantha	Rh2BG541800 Rh2DG550300 Rh3AG220900 Rh3BG253100 Rh3CG249600 Rh3DG245600 Rh4AG149700 Rh4AG281600 Rh4BG147000 Rh4BG287200 Rh4CG157000 Rh4CG302800 Rh4DG142700 Rh4DG284300
rosa_wichuraiana	Rw0G000440 Rw2G043640 Rw3G019870 Rw4G024450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	226
AasI	GACNNNNNNGTC	1 cut(s)	128
AatII	GACGTC	1 cut(s)	126
Acc36I	ACCTGC	1 cut(s)	226
AccB1I	GGYRCC	1 cut(s)	137
AccBSI	CCGCTC	1 cut(s)	79
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	1 cut(s)	189
AciI	CCGC	2 cut(s)	77, 178
AclWI	GGATC	3 cut(s)	113, 259, 272
AcoI	YGGCCR	1 cut(s)	175
AcuI	CTGAAG	3 cut(s)	40, 327, 365
AcyI	GRCGYC	2 cut(s)	123, 138
AfiI	CCNNNNNNNGG	1 cut(s)	410
AflII	CTTAAG	1 cut(s)	479
AgsI	TTSAA	1 cut(s)	425
AjnI	CCWGG	1 cut(s)	296
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	1 cut(s)	343
AluI	AGCT	1 cut(s)	343
Alw21I	GWGCWC	1 cut(s)	305
Alw26I	GTCTC	3 cut(s)	23, 30, 382
Alw44I	GTGCAC	1 cut(s)	301
AlwI	GGATC	3 cut(s)	113, 259, 272
AoxI	GGCC	3 cut(s)	51, 175, 354
ApaLI	GTGCAC	1 cut(s)	301
ApeKI	GCWGC	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	2 cut(s)	51, 401
AsuC2I	CCSGG	1 cut(s)	411
AsuHPI	GGTGA	3 cut(s)	193, 340, 380
AvaII	GGWCC	1 cut(s)	401
BaeGI	GKGCMC	1 cut(s)	305
BamHI	GGATCC	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	137
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
Bbv12I	GWGCWC	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	3 cut(s)	149, 221, 301
BceAI	ACGGC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	298
BcnI	CCSGG	1 cut(s)	411
BcoDI	GTCTC	3 cut(s)	23, 30, 382
BfaI	CTAG	2 cut(s)	48, 493
BfoI	RGCGCY	1 cut(s)	141
BfrI	CTTAAG	1 cut(s)	479
BfuAI	ACCTGC	1 cut(s)	226
BisI	GCNGC	2 cut(s)	178, 290
BlsI	GCNGC	2 cut(s)	179, 291
Bme1390I	CCNGG	2 cut(s)	298, 411
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	2 cut(s)	51, 401
BmiI	GGNNCC	4 cut(s)	139, 266, 402, 403
BmrFI	CCNGG	2 cut(s)	298, 411
Bpu10I	CCTNAGC	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	411
BsaHI	GRCGYC	2 cut(s)	123, 138
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	2 cut(s)	172, 357
BsaWI	WCCGGW	1 cut(s)	102
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 433, 463
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse118I	RCCGGY	1 cut(s)	4
BseBI	CCWGG	1 cut(s)	298
BseDI	CCNNGG	2 cut(s)	172, 357
BseGI	GGATG	3 cut(s)	72, 141, 293
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseSI	GKGCMC	1 cut(s)	305
BseX3I	CGGCCG	1 cut(s)	175
BseXI	GCAGC	1 cut(s)	301
BsgI	GTGCAG	2 cut(s)	308, 450
Bsh1236I	CGCG	1 cut(s)	189
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	3 cut(s)	53, 177, 356
BshNI	GGYRCC	1 cut(s)	137
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	305
BsiSI	CCGG	3 cut(s)	5, 103, 411
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	3 cut(s)	23, 30, 382
BsmFI	GGGAC	1 cut(s)	387
BsnI	GGCC	3 cut(s)	53, 177, 356
Bso31I	GGTCTC	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp143I	GATC	5 cut(s)	23, 105, 225, 264, 475
BspACI	CCGC	2 cut(s)	77, 178
BspANI	GGCC	3 cut(s)	53, 177, 356
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	4 cut(s)	139, 266, 402, 403
BspMI	ACCTGC	1 cut(s)	226
BspPI	GGATC	3 cut(s)	113, 259, 272
BspT107I	GGYRCC	1 cut(s)	137
BspTI	CTTAAG	1 cut(s)	479
BspTNI	GGTCTC	1 cut(s)	23
BsrBI	CCGCTC	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	172, 357
BssMI	GATC	5 cut(s)	23, 105, 225, 264, 475
BssNI	GRCGYC	2 cut(s)	123, 138
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	298
Bst4CI	ACNGT	1 cut(s)	445
Bst6I	CTCTTC	2 cut(s)	254, 303
BstACI	GRCGYC	2 cut(s)	123, 138
BstAFI	CTTAAG	1 cut(s)	479
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	363
BstDSI	CCRYGG	1 cut(s)	172
BstEII	GGTNACC	1 cut(s)	242
BstF5I	GGATG	3 cut(s)	72, 141, 293
BstFNI	CGCG	1 cut(s)	189
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	5 cut(s)	26, 108, 228, 267, 478
BstMAI	GTCTC	3 cut(s)	23, 30, 382
BstMBI	GATC	5 cut(s)	23, 105, 225, 264, 475
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	3 cut(s)	186, 280, 289
BstNI	CCWGG	1 cut(s)	298
BstNSI	RCATGY	1 cut(s)	287
BstPI	GGTNACC	1 cut(s)	242
BstSCI	CCNGG	2 cut(s)	296, 409
BstSLI	GKGCMC	1 cut(s)	305
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	301
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
BstZI	CGGCCG	1 cut(s)	175
BsuRI	GGCC	3 cut(s)	53, 177, 356
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	3 cut(s)	72, 141, 293
BtsIMutI	CAGTG	1 cut(s)	303
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	2 cut(s)	51, 401
CseI	GACGC	1 cut(s)	178
CviAII	CATG	4 cut(s)	14, 269, 284, 418
DdeI	CTNAG	1 cut(s)	363
DinI	GGCGCC	1 cut(s)	139
DpnI	GATC	5 cut(s)	25, 107, 227, 266, 477
DpnII	GATC	5 cut(s)	23, 105, 225, 264, 475
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	175
EagI	CGGCCG	1 cut(s)	175
Eam1104I	CTCTTC	2 cut(s)	254, 303
EarI	CTCTTC	2 cut(s)	254, 303
EclXI	CGGCCG	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	357
Eco31I	GGTCTC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	401
Eco52I	CGGCCG	1 cut(s)	175
Eco57I	CTGAAG	3 cut(s)	40, 327, 365
Eco91I	GGTNACC	1 cut(s)	242
EcoO109I	RGGNCCY	2 cut(s)	51, 401
EcoO65I	GGTNACC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	296
EcoT14I	CCWWGG	1 cut(s)	357
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	4 cut(s)	17, 272, 287, 421
FaiI	YATR	7 cut(s)	15, 155, 270, 285, 419, 437, 462
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	4 cut(s)	13, 268, 283, 417
FauI	CCCGC	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	178, 290
FokI	GGATG	3 cut(s)	59, 128, 280
Fsp4HI	GCNGC	2 cut(s)	178, 290
FspBI	CTAG	2 cut(s)	48, 493
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	2 cut(s)	178, 290
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	3 cut(s)	53, 177, 356
HapII	CCGG	3 cut(s)	5, 103, 411
HgaI	GACGC	1 cut(s)	178
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	2 cut(s)	123, 138
Hin1II	CATG	4 cut(s)	17, 272, 287, 421
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HpaII	CCGG	3 cut(s)	5, 103, 411
HphI	GGTGA	3 cut(s)	193, 340, 380
Hpy166II	GTNNAC	2 cut(s)	121, 303
Hpy188I	TCNGA	2 cut(s)	23, 218
Hpy188III	TCNNGA	6 cut(s)	27, 58, 82, 94, 193, 256
Hpy8I	GTNNAC	2 cut(s)	121, 303
Hpy99I	CGWCG	2 cut(s)	122, 125
HpyAV	CCTTC	5 cut(s)	58, 64, 319, 340, 419
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4IV	ACGT	2 cut(s)	123, 198
HpyCH4V	TGCA	3 cut(s)	289, 303, 431
HpyF10VI	GCNNNNNNNGC	3 cut(s)	186, 280, 289
HpyF3I	CTNAG	1 cut(s)	363
HpySE526I	ACGT	2 cut(s)	123, 198
Hsp92I	GRCGYC	2 cut(s)	123, 138
Hsp92II	CATG	4 cut(s)	17, 272, 287, 421
HspAI	GCGC	1 cut(s)	138
KasI	GGCGCC	1 cut(s)	137
KflI	GGGWCCC	1 cut(s)	401
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	5 cut(s)	23, 105, 225, 264, 475
LmnI	GCTCC	1 cut(s)	280
Lsp1109I	GCAGC	1 cut(s)	301
MaeI	CTAG	2 cut(s)	48, 493
MaeII	ACGT	2 cut(s)	123, 198
MaeIII	GTNAC	5 cut(s)	68, 199, 242, 445, 488
MalI	GATC	5 cut(s)	25, 107, 227, 266, 477
MbiI	CCGCTC	1 cut(s)	79
MboI	GATC	5 cut(s)	23, 105, 225, 264, 475
MboII	GAAGA	4 cut(s)	73, 271, 320, 343
MflI	RGATCY	1 cut(s)	264
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	1 cut(s)	249
Mly113I	GGCGCC	1 cut(s)	138
MnlI	CCTC	6 cut(s)	101, 255, 315, 346, 364, 479
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	1 cut(s)	480
MslI	CAYNNNNRTG	2 cut(s)	273, 298
MspCI	CTTAAG	1 cut(s)	479
MspI	CCGG	3 cut(s)	5, 103, 411
MspR9I	CCNGG	2 cut(s)	298, 411
MvaI	CCWGG	1 cut(s)	298
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	3 cut(s)	186, 280, 289
NaeI	GCCGGC	1 cut(s)	6
NarI	GGCGCC	1 cut(s)	138
NciI	CCSGG	1 cut(s)	411
NdeII	GATC	5 cut(s)	23, 105, 225, 264, 475
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	4 cut(s)	17, 272, 287, 421
NlaIV	GGNNCC	4 cut(s)	139, 266, 402, 403
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	287
PaqCI	CACCTGC	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PdiI	GCCGGC	1 cut(s)	6
PflFI	GACNNNGTC	2 cut(s)	15, 116
PkrI	GCNGC	2 cut(s)	179, 291
PluTI	GGCGCC	1 cut(s)	141
PpuMI	RGGWCCY	1 cut(s)	401
Psp5II	RGGWCCY	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	296
PspEI	GGTNACC	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	296
PspN4I	GGNNCC	4 cut(s)	139, 266, 402, 403
PspPI	GGNCC	2 cut(s)	51, 401
PspPPI	RGGWCCY	1 cut(s)	401
PsuI	RGATCY	1 cut(s)	264
PsyI	GACNNNGTC	2 cut(s)	15, 116
RseI	CAYNNNNRTG	2 cut(s)	273, 298
SalI	GTCGAC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	2 cut(s)	178, 290
Sau3AI	GATC	5 cut(s)	23, 105, 225, 264, 475
Sau96I	GGNCC	2 cut(s)	51, 401
ScrFI	CCNGG	2 cut(s)	298, 411
SduI	GDGCHC	1 cut(s)	305
SfoI	GGCGCC	1 cut(s)	139
SgrDI	CGTCGACG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	401
SmiMI	CAYNNNNRTG	2 cut(s)	273, 298
SmlI	CTYRAG	2 cut(s)	92, 479
SmoI	CTYRAG	2 cut(s)	92, 479
Sse9I	AATT	1 cut(s)	249
SsiI	CCGC	2 cut(s)	77, 178
SspDI	GGCGCC	1 cut(s)	137
SspMI	CTAG	2 cut(s)	48, 493
StyD4I	CCNGG	2 cut(s)	296, 409
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	445
TaiI	ACGT	2 cut(s)	126, 201
TaqI	TCGA	3 cut(s)	28, 83, 120
TasI	AATT	1 cut(s)	249
TauI	GCSGC	1 cut(s)	180
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	406
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	1 cut(s)	310
Tth111I	GACNNNGTC	2 cut(s)	15, 116
Vha464I	CTTAAG	1 cut(s)	479
VneI	GTGCAC	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	401
XceI	RCATGY	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	2 cut(s)	48, 493
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.