Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00013

Orthogroup ID

OG0001636

Physical Location & Seq

Genomic Coordinates Reverse (-)

44297 .. 45107

Gene Structure 811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G000440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGATCATATAGGTTGGAGAGAAAGTGGTCTGGAGGTTGACTTGGAAAGTGGTGAGACTAAATCTGACAGTCAAGAAGATGGAAGTGTAGAGTCCAGTTCCCATGAGCAGGTGGGTAACCGGATTATCAGGAAGAGGATCCATGGGCATGTAGAGCACGGACAGCCATCAAGGTGCACTGAGGAGTTCCATTTGAGGAAGGAGAAGAACGATCAGCTGAAGGCAGAGGCCAAGGCTAAGGGTGAGGTCATCAACACCAAGAGACAGCCAAAGGGTCCCAATCCTGGTTTCATGGTTGAAGGTGCAGTTATGGAAACTGTTGCTCCCATTCCTTATGATGTCGTCAATGATCTTAAGGGAGGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21e

Protein Analysis

122

Amino Acids

13.58

Weight (kDa)

5.67

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09590 AT1G09690 AT1G57660 AT1G57860
fragaria_vesca	FvH4_4g22080 FvH4_4g22080 FvH4_6g21700
malus_domestica	MD12G1053800.v1.1 MD14G1052100.v1.1
prunus_persica	Prupe.1G210800_v2.0.a1 Prupe.7G083200_v2.0.a1 Prupe.7G095700_v2.0.a1
pyrus_communis	pycom12g04680 pycom14g04340
rosa_chinensis	RchiOBHm_Chr3g0478971 RchiOBHm_Chr4g0428341
rosa_laevigata	RLG00000007163 RLG00000008655 RLG00000021006 RLG00000023614
rosa_multiflora	Rmu_co8301713.1_g000001 Rmu_co8364797.1_g000001 Rmu_sc0005645.1_g000005 Rmu_sc0011715.1_g000001 Rmu_sc0031392.1_g000001 Rmu_ssc0000173.1_g000004
rosa_roxburghii	Rroxscaffold_2G00092040 Rroxscaffold_5G00352860 Rroxscaffold_6G00402860
rosa_rugosa	Rorug03G0169900 Rorug04G0224800
rosa_samantha	Rh2BG541800 Rh2DG550300 Rh3AG220900 Rh3BG253100 Rh3CG249600 Rh3DG245600 Rh4AG149700 Rh4AG281600 Rh4BG147000 Rh4BG287200 Rh4CG157000 Rh4CG302800 Rh4DG142700 Rh4DG284300
rosa_wichuraiana	Rw0G000440 Rw2G043640 Rw3G019870 Rw4G024450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	100
Acc36I	ACCTGC	1 cut(s)	100
AclWI	GGATC	3 cut(s)	12, 133, 146
AcuI	CTGAAG	1 cut(s)	239
AfiI	CCNNNNNNNGG	2 cut(s)	109, 284
AflII	CTTAAG	1 cut(s)	353
AgsI	TTSAA	1 cut(s)	299
AjnI	CCWGG	1 cut(s)	283
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
Alw21I	GWGCWC	2 cut(s)	159, 179
Alw26I	GTCTC	2 cut(s)	50, 256
Alw44I	GTGCAC	1 cut(s)	175
AlwI	GGATC	3 cut(s)	12, 133, 146
AoxI	GGCC	1 cut(s)	228
ApaLI	GTGCAC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	2 cut(s)	65, 254
AvaII	GGWCC	1 cut(s)	275
BaeGI	GKGCMC	1 cut(s)	179
BamHI	GGATCC	1 cut(s)	138
Bbv12I	GWGCWC	2 cut(s)	159, 179
BccI	CCATC	2 cut(s)	74, 175
BciT130I	CCWGG	1 cut(s)	285
BcoDI	GTCTC	2 cut(s)	50, 256
BfaI	CTAG	1 cut(s)	367
BfrI	CTTAAG	1 cut(s)	353
BfuAI	ACCTGC	1 cut(s)	100
Bme1390I	CCNGG	1 cut(s)	285
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	3 cut(s)	140, 276, 277
BmrFI	CCNGG	1 cut(s)	285
BpmI	CTGGAG	1 cut(s)	53
Bpu10I	CCTNAGC	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	142, 231
BsaWI	WCCGGW	1 cut(s)	120
BsaXI	ACNNNNNCTCC	4 cut(s)	10, 40, 307, 337
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 284
Bse1I	ACTGG	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	2 cut(s)	142, 231
BseLI	CCNNNNNNNGG	2 cut(s)	109, 284
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	96
BseRI	GAGGAG	1 cut(s)	197
BseSI	GKGCMC	1 cut(s)	179
BsgI	GTGCAG	1 cut(s)	324
BshFI	GGCC	1 cut(s)	230
BsiHKAI	GWGCWC	2 cut(s)	159, 179
BsiSI	CCGG	1 cut(s)	121
BslFI	GGGAC	1 cut(s)	261
BslI	CCNNNNNNNGG	2 cut(s)	109, 284
BsmAI	GTCTC	2 cut(s)	50, 256
BsmFI	GGGAC	1 cut(s)	261
BsnI	GGCC	1 cut(s)	230
Bsp1286I	GDGCHC	2 cut(s)	159, 179
Bsp143I	GATC	4 cut(s)	4, 138, 211, 349
Bsp19I	CCATGG	1 cut(s)	142
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	3 cut(s)	140, 276, 277
BspMI	ACCTGC	1 cut(s)	100
BspPI	GGATC	3 cut(s)	12, 133, 146
BspTI	CTTAAG	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	96
BssECI	CCNNGG	2 cut(s)	142, 231
BssMI	GATC	4 cut(s)	4, 138, 211, 349
BssT1I	CCWWGG	2 cut(s)	142, 231
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	2 cut(s)	71, 319
Bst6I	CTCTTC	1 cut(s)	128
BstAFI	CTTAAG	1 cut(s)	353
BstDEI	CTNAG	2 cut(s)	180, 237
BstDSI	CCRYGG	1 cut(s)	142
BstEII	GGTNACC	1 cut(s)	116
BstKTI	GATC	4 cut(s)	7, 141, 214, 352
BstMAI	GTCTC	2 cut(s)	50, 256
BstMBI	GATC	4 cut(s)	4, 138, 211, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 163
BstNI	CCWGG	1 cut(s)	285
BstNSI	RCATGY	1 cut(s)	152
BstPI	GGTNACC	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	283
BstSLI	GKGCMC	1 cut(s)	179
BstX2I	RGATCY	1 cut(s)	138
BstYI	RGATCY	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	230
BtgI	CCRYGG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	177
BveI	ACCTGC	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	275
CviAII	CATG	4 cut(s)	104, 143, 149, 292
CviJI	RGCY	5 cut(s)	166, 217, 230, 236, 268
CviKI_1	RGCY	5 cut(s)	166, 217, 230, 236, 268
DdeI	CTNAG	2 cut(s)	180, 237
DpnI	GATC	4 cut(s)	6, 140, 213, 351
DpnII	GATC	4 cut(s)	4, 138, 211, 349
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Eco130I	CCWWGG	2 cut(s)	142, 231
Eco47I	GGWCC	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	239
Eco91I	GGTNACC	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	275
EcoO65I	GGTNACC	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	283
EcoT14I	CCWWGG	2 cut(s)	142, 231
ErhI	CCWWGG	2 cut(s)	142, 231
FaeI	CATG	4 cut(s)	107, 146, 152, 295
FaiI	YATR	8 cut(s)	9, 11, 105, 144, 150, 293, 311, 336
FaqI	GGGAC	1 cut(s)	261
FatI	CATG	4 cut(s)	103, 142, 148, 291
FspBI	CTAG	1 cut(s)	367
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	1 cut(s)	121
Hin1II	CATG	4 cut(s)	107, 146, 152, 295
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	2 cut(s)	65, 254
Hpy166II	GTNNAC	2 cut(s)	40, 177
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	3 cut(s)	32, 74, 130
Hpy8I	GTNNAC	2 cut(s)	40, 177
HpyAV	CCTTC	3 cut(s)	193, 214, 293
HpyCH4III	ACNGT	2 cut(s)	71, 319
HpyCH4V	TGCA	2 cut(s)	177, 305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 163
HpyF3I	CTNAG	2 cut(s)	180, 237
Hsp92II	CATG	4 cut(s)	107, 146, 152, 295
KflI	GGGWCCC	1 cut(s)	275
Kzo9I	GATC	4 cut(s)	4, 138, 211, 349
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	7 cut(s)	17, 95, 109, 115, 134, 270, 297
MaeI	CTAG	1 cut(s)	367
MaeIII	GTNAC	2 cut(s)	116, 362
MalI	GATC	4 cut(s)	6, 140, 213, 351
MboI	GATC	4 cut(s)	4, 138, 211, 349
MboII	GAAGA	3 cut(s)	89, 145, 217
MflI	RGATCY	1 cut(s)	138
MhlI	GDGCHC	2 cut(s)	159, 179
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	7 cut(s)	28, 129, 175, 189, 220, 238, 353
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	2 cut(s)	147, 172
MspA1I	CMGCKG	1 cut(s)	217
MspCI	CTTAAG	1 cut(s)	353
MspI	CCGG	1 cut(s)	121
MspR9I	CCNGG	1 cut(s)	285
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	2 cut(s)	154, 163
NcoI	CCATGG	1 cut(s)	142
NdeII	GATC	4 cut(s)	4, 138, 211, 349
NlaIII	CATG	4 cut(s)	107, 146, 152, 295
NlaIV	GGNNCC	3 cut(s)	140, 276, 277
NspI	RCATGY	1 cut(s)	152
PaqCI	CACCTGC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PpuMI	RGGWCCY	1 cut(s)	275
Psp5II	RGGWCCY	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	283
PspEI	GGTNACC	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	3 cut(s)	140, 276, 277
PspPI	GGNCC	1 cut(s)	275
PspPPI	RGGWCCY	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	138
PvuII	CAGCTG	1 cut(s)	217
RseI	CAYNNNNRTG	2 cut(s)	147, 172
SaqAI	TTAA	1 cut(s)	354
Sau3AI	GATC	4 cut(s)	4, 138, 211, 349
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	285
SduI	GDGCHC	2 cut(s)	159, 179
SetI	ASST	8 cut(s)	16, 39, 114, 176, 219, 249, 304, 364
SinI	GGWCC	1 cut(s)	275
SmiMI	CAYNNNNRTG	2 cut(s)	147, 172
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
SspMI	CTAG	1 cut(s)	367
StyD4I	CCNGG	1 cut(s)	283
StyI	CCWWGG	2 cut(s)	142, 231
TaaI	ACNGT	2 cut(s)	71, 319
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	1 cut(s)	184
TspDTI	ATGAA	1 cut(s)	280
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	1 cut(s)	184
Vha464I	CTTAAG	1 cut(s)	353
VneI	GTGCAC	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	275
XceI	RCATGY	1 cut(s)	152
XspI	CTAG	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.