Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001636

Physical Location & Seq

Genomic Coordinates Reverse (-)

22428213 .. 22428840

Gene Structure 628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G210800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCCGGCGGGTCATGGGTTGCGCAGTCGGACGAGGGACCTGTTCTCACGGGCGTTCAGGAAGAAGGGCTACATCCCACTCTCCACCTACCTAAAGACCTACAGAACGGGCGACTACGTGGACGTGAAGGTAAACGGCGCCGTTCACAAGGGCATGCCCCACAAGTTCTACCATGGCCGCACAGGCCAAGTCTGGAATGTCACAAAGCGCGCGATCGGCGTCGAGATGAACAAGCAGGTCGGAAACAGGGTCATCAAGAAGCGGATTCACGTGAGGGTGGAGCATGTTCAGCCGTCGAGGTGCGAGGAAGAGTTCAGAGCAAGAATGGTTCGAAATGACGAGCTGAAGGCGGAGGCAAAAGCTCGTGGGGTGAAGATTAGCACCAAGAGGCAGCCTGAGGGGCCTAAGCCAGGCTTCATTGTCGGCGGGGCTTCCATTGAAACTGTCACTCCCATTCCTTACGACGTCGTCAATGACCTCAAGGGTGGCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21e

Protein Analysis

165

Amino Acids

18.57

Weight (kDa)

10.33

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09590 AT1G09690 AT1G57660 AT1G57860
fragaria_vesca	FvH4_4g22080 FvH4_4g22080 FvH4_6g21700
malus_domestica	MD12G1053800.v1.1 MD14G1052100.v1.1
prunus_persica	Prupe.1G210800_v2.0.a1 Prupe.7G083200_v2.0.a1 Prupe.7G095700_v2.0.a1
pyrus_communis	pycom12g04680 pycom14g04340
rosa_chinensis	RchiOBHm_Chr3g0478971 RchiOBHm_Chr4g0428341
rosa_laevigata	RLG00000007163 RLG00000008655 RLG00000021006 RLG00000023614
rosa_multiflora	Rmu_co8301713.1_g000001 Rmu_co8364797.1_g000001 Rmu_sc0005645.1_g000005 Rmu_sc0011715.1_g000001 Rmu_sc0031392.1_g000001 Rmu_ssc0000173.1_g000004
rosa_roxburghii	Rroxscaffold_2G00092040 Rroxscaffold_5G00352860 Rroxscaffold_6G00402860
rosa_rugosa	Rorug03G0169900 Rorug04G0224800
rosa_samantha	Rh2BG541800 Rh2DG550300 Rh3AG220900 Rh3BG253100 Rh3CG249600 Rh3DG245600 Rh4AG149700 Rh4AG281600 Rh4BG147000 Rh4BG287200 Rh4CG157000 Rh4CG302800 Rh4DG142700 Rh4DG284300
rosa_wichuraiana	Rw0G000440 Rw2G043640 Rw3G019870 Rw4G024450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	468
Acc16I	TGCGCA	1 cut(s)	23
Acc36I	ACCTGC	1 cut(s)	226
AccB1I	GGYRCC	1 cut(s)	137
AccII	CGCG	2 cut(s)	210, 212
AciI	CCGC	5 cut(s)	8, 178, 262, 350, 426
AcoI	YGGCCR	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	365
AcvI	CACGTG	1 cut(s)	271
AcyI	GRCGYC	3 cut(s)	138, 219, 465
AfiI	CCNNNNNNNGG	1 cut(s)	410
AgsI	TTSAA	1 cut(s)	440
AjiI	CACGTC	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	409
AluBI	AGCT	2 cut(s)	343, 362
AluI	AGCT	2 cut(s)	343, 362
AoxI	GGCC	3 cut(s)	175, 184, 401
ApeKI	GCWGC	1 cut(s)	391
AspLEI	GCGC	4 cut(s)	24, 140, 210, 212
AspS9I	GGNCC	2 cut(s)	37, 401
AsuHPI	GGTGA	1 cut(s)	382
AsuII	TTCGAA	1 cut(s)	331
AvaII	GGWCC	1 cut(s)	37
AxyI	CCTNAGG	1 cut(s)	396
BanI	GGYRCC	1 cut(s)	137
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BauI	CACGAG	1 cut(s)	363
BbrPI	CACGTG	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	403
BceAI	ACGGC	3 cut(s)	125, 151, 277
BciT130I	CCWGG	1 cut(s)	411
BfmI	CTRYAG	1 cut(s)	100
BfoI	RGCGCY	1 cut(s)	141
BfuAI	ACCTGC	1 cut(s)	226
BglI	GCCNNNNNGGC	2 cut(s)	183, 400
BisI	GCNGC	2 cut(s)	178, 392
BlsI	GCNGC	2 cut(s)	179, 393
Bme1390I	CCNGG	1 cut(s)	411
Bme18I	GGWCC	1 cut(s)	37
BmgBI	CACGTC	1 cut(s)	124
BmgT120I	GGNCC	2 cut(s)	37, 401
BmiI	GGNNCC	3 cut(s)	38, 139, 402
BmrFI	CCNGG	1 cut(s)	411
Bpu10I	CCTNAGC	1 cut(s)	405
Bpu14I	TTCGAA	1 cut(s)	331
BpuEI	CTTGAG	1 cut(s)	464
BsaAI	YACGTR	2 cut(s)	118, 271
BsaHI	GRCGYC	3 cut(s)	138, 219, 465
BsaJI	CCNNGG	1 cut(s)	172
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse118I	RCCGGY	1 cut(s)	4
Bse21I	CCTNAGG	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMII	CTCAG	1 cut(s)	387
BsePI	GCGCGC	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	403
Bsh1236I	CGCG	2 cut(s)	210, 212
Bsh1285I	CGRYCG	1 cut(s)	216
BshFI	GGCC	3 cut(s)	177, 186, 403
BshNI	GGYRCC	1 cut(s)	137
BsiEI	CGRYCG	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmFI	GGGAC	1 cut(s)	50
BsnI	GGCC	3 cut(s)	177, 186, 403
Bsp119I	TTCGAA	1 cut(s)	331
Bsp143I	GATC	1 cut(s)	213
Bsp19I	CCATGG	1 cut(s)	172
BspACI	CCGC	5 cut(s)	8, 178, 262, 350, 426
BspANI	GGCC	3 cut(s)	177, 186, 403
BspCNI	CTCAG	1 cut(s)	388
BspFNI	CGCG	2 cut(s)	210, 212
BspLI	GGNNCC	3 cut(s)	38, 139, 402
BspMI	ACCTGC	1 cut(s)	226
BspT104I	TTCGAA	1 cut(s)	331
BspT107I	GGYRCC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	172
BssHII	GCGCGC	1 cut(s)	208
BssMI	GATC	1 cut(s)	213
BssNI	GRCGYC	3 cut(s)	138, 219, 465
BssSI	CACGAG	1 cut(s)	363
BssT1I	CCWWGG	1 cut(s)	172
Bst2BI	CACGAG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	1 cut(s)	445
Bst6I	CTCTTC	1 cut(s)	303
BstACI	GRCGYC	3 cut(s)	138, 219, 465
BstBAI	YACGTR	2 cut(s)	118, 271
BstBI	TTCGAA	1 cut(s)	331
BstC8I	GCNNGC	3 cut(s)	6, 155, 210
BstDEI	CTNAG	2 cut(s)	396, 405
BstDSI	CCRYGG	1 cut(s)	172
BstENI	CCTNNNNNAGG	1 cut(s)	408
BstF5I	GGATG	1 cut(s)	72
BstFNI	CGCG	2 cut(s)	210, 212
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	4 cut(s)	24, 140, 210, 212
BstKTI	GATC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	213
BstMCI	CGRYCG	1 cut(s)	216
BstMWI	GCNNNNNNNGC	4 cut(s)	183, 216, 289, 400
BstNI	CCWGG	1 cut(s)	411
BstNSI	RCATGY	2 cut(s)	157, 287
BstSCI	CCNGG	1 cut(s)	409
BstSFI	CTRYAG	1 cut(s)	100
BstUI	CGCG	2 cut(s)	210, 212
BstV1I	GCAGC	1 cut(s)	403
Bsu36I	CCTNAGG	1 cut(s)	396
BsuRI	GGCC	3 cut(s)	177, 186, 403
BtgI	CCRYGG	1 cut(s)	172
BtrI	CACGTC	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	72
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	3 cut(s)	6, 155, 210
CfoI	GCGC	4 cut(s)	24, 140, 210, 212
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	2 cut(s)	37, 401
CseI	GACGC	1 cut(s)	208
CviAII	CATG	4 cut(s)	14, 154, 173, 284
DdeI	CTNAG	2 cut(s)	396, 405
DinI	GGCGCC	1 cut(s)	139
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
EaeI	YGGCCR	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
EciI	GGCGGA	1 cut(s)	365
Eco130I	CCWWGG	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	365
Eco72I	CACGTG	1 cut(s)	271
Eco81I	CCTNAGG	1 cut(s)	396
EcoNI	CCTNNNNNAGG	1 cut(s)	408
EcoO109I	RGGNCCY	2 cut(s)	37, 401
EcoRII	CCWGG	1 cut(s)	409
EcoT14I	CCWWGG	1 cut(s)	172
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	4 cut(s)	17, 157, 176, 287
FaiI	YATR	4 cut(s)	15, 155, 174, 285
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	4 cut(s)	13, 153, 172, 283
FauI	CCCGC	1 cut(s)	419
Fnu4HI	GCNGC	2 cut(s)	178, 392
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	2 cut(s)	178, 392
FspI	TGCGCA	1 cut(s)	23
GlaI	GCGC	4 cut(s)	23, 139, 209, 211
GluI	GCNGC	2 cut(s)	178, 392
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	3 cut(s)	177, 186, 403
HapII	CCGG	1 cut(s)	5
HgaI	GACGC	1 cut(s)	208
HhaI	GCGC	4 cut(s)	24, 140, 210, 212
Hin1I	GRCGYC	3 cut(s)	138, 219, 465
Hin1II	CATG	4 cut(s)	17, 157, 176, 287
Hin6I	GCGC	4 cut(s)	22, 138, 208, 210
HinP1I	GCGC	4 cut(s)	22, 138, 208, 210
HinfI	GANTC	1 cut(s)	265
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	3 cut(s)	121, 133, 145
Hpy188I	TCNGA	3 cut(s)	30, 242, 317
Hpy188III	TCNNGA	4 cut(s)	58, 193, 223, 256
Hpy8I	GTNNAC	3 cut(s)	121, 133, 145
Hpy99I	CGWCG	4 cut(s)	224, 298, 467, 470
HpyAV	CCTTC	3 cut(s)	58, 121, 340
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4IV	ACGT	4 cut(s)	117, 123, 270, 465
HpyF10VI	GCNNNNNNNGC	4 cut(s)	183, 216, 289, 400
HpyF3I	CTNAG	2 cut(s)	396, 405
HpySE526I	ACGT	4 cut(s)	117, 123, 270, 465
Hsp92I	GRCGYC	3 cut(s)	138, 219, 465
Hsp92II	CATG	4 cut(s)	17, 157, 176, 287
HspAI	GCGC	4 cut(s)	22, 138, 208, 210
KasI	GGCGCC	1 cut(s)	137
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	1 cut(s)	213
LmnI	GCTCC	1 cut(s)	280
Lsp1109I	GCAGC	1 cut(s)	403
MaeII	ACGT	4 cut(s)	117, 123, 270, 465
MaeIII	GTNAC	2 cut(s)	199, 445
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MboII	GAAGA	3 cut(s)	73, 320, 385
Mly113I	GGCGCC	1 cut(s)	138
MmeI	TCCRAC	2 cut(s)	8, 220
MnlI	CCTC	8 cut(s)	27, 267, 291, 298, 346, 381, 391, 488
MroNI	GCCGGC	1 cut(s)	4
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	411
MvaI	CCWGG	1 cut(s)	411
MvnI	CGCG	2 cut(s)	210, 212
MwoI	GCNNNNNNNGC	4 cut(s)	183, 216, 289, 400
NaeI	GCCGGC	1 cut(s)	6
NarI	GGCGCC	1 cut(s)	138
NcoI	CCATGG	1 cut(s)	172
NdeII	GATC	1 cut(s)	213
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	4 cut(s)	17, 157, 176, 287
NlaIV	GGNNCC	3 cut(s)	38, 139, 402
NmuCI	GTSAC	2 cut(s)	199, 445
NsbI	TGCGCA	1 cut(s)	23
NspI	RCATGY	2 cut(s)	157, 287
NspV	TTCGAA	1 cut(s)	331
PaeI	GCATGC	1 cut(s)	157
PauI	GCGCGC	1 cut(s)	208
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	265
PflFI	GACNNNGTC	1 cut(s)	467
PkrI	GCNGC	2 cut(s)	179, 393
Ple19I	CGATCG	1 cut(s)	216
PluTI	GGCGCC	1 cut(s)	141
PmaCI	CACGTG	1 cut(s)	271
PmlI	CACGTG	1 cut(s)	271
Ppu21I	YACGTR	2 cut(s)	118, 271
PpuMI	RGGWCCY	1 cut(s)	37
Psp5II	RGGWCCY	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	409
PspCI	CACGTG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	3 cut(s)	38, 139, 402
PspPI	GGNCC	2 cut(s)	37, 401
PspPPI	RGGWCCY	1 cut(s)	37
PsyI	GACNNNGTC	1 cut(s)	467
PteI	GCGCGC	1 cut(s)	208
PvuI	CGATCG	1 cut(s)	216
SatI	GCNGC	2 cut(s)	178, 392
Sau3AI	GATC	1 cut(s)	213
Sau96I	GGNCC	2 cut(s)	37, 401
ScrFI	CCNGG	1 cut(s)	411
SfcI	CTRYAG	1 cut(s)	100
SfiI	GGCCNNNNNGGCC	1 cut(s)	183
SfoI	GGCGCC	1 cut(s)	139
SfuI	TTCGAA	1 cut(s)	331
SinI	GGWCC	1 cut(s)	37
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
SphI	GCATGC	1 cut(s)	157
SsiI	CCGC	5 cut(s)	8, 178, 262, 350, 426
SspDI	GGCGCC	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	409
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	445
TaiI	ACGT	4 cut(s)	120, 126, 273, 468
TaqI	TCGA	3 cut(s)	222, 296, 331
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	1 cut(s)	265
TseFI	GTSAC	2 cut(s)	199, 445
TseI	GCWGC	1 cut(s)	391
Tsp45I	GTSAC	2 cut(s)	199, 445
TspDTI	ATGAA	2 cut(s)	242, 406
Tth111I	GACNNNGTC	1 cut(s)	467
VpaK11BI	GGWCC	1 cut(s)	37
XagI	CCTNNNNNAGG	1 cut(s)	408
XceI	RCATGY	2 cut(s)	157, 287
ZraI	GACGTC	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.