Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001636

Physical Location & Seq

Genomic Coordinates Forward (+)

11830176 .. 11831828

Gene Structure 1653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G083200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCCGGCTGGACACGGTCTCAGGTCTCGTACTCGCGATCTCTTCTCGCGGGCCTTCAGGAAGAAGGGTTACATCCCTCTTTCAACCTATCTGAAGACCTACAGGATCGGCGACTATGTCGACGTCAAGGTTAACGGCGCCGTGCACAAGGGTATGCCCCACAAGTTCTACCATGGACGTACTGGTCGCGTCTGGAACGTCACCAAGCGCGCCATCGGTGTGGAAATCAACAAGCAGGTTGGCAACAGGATTATCAGGAAGAGGATCCATGTGCGTGTGGAGCATGTGCAGCCTTCAAGGTGCACTGAGGAATTCCGTTTGAGGAAGATAAAGAATGATCAGTTGAAGGCTGAGGCCAAGGCAAAGGGTGAGGTCATTAGCACCAAGAGGCAGCCTAAGGGACCCAAGCCAGGTTTCAGGGTTGAAGGTGCAGTCATGGAAACTGTTACTCCCATTCCTTACGATGTCGTCAATGATCTTAAGGGAGGCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21e

Protein Analysis

165

Amino Acids

18.75

Weight (kDa)

10.54

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09590 AT1G09690 AT1G57660 AT1G57860
fragaria_vesca	FvH4_4g22080 FvH4_4g22080 FvH4_6g21700
malus_domestica	MD12G1053800.v1.1 MD14G1052100.v1.1
prunus_persica	Prupe.1G210800_v2.0.a1 Prupe.7G083200_v2.0.a1 Prupe.7G095700_v2.0.a1
pyrus_communis	pycom12g04680 pycom14g04340
rosa_chinensis	RchiOBHm_Chr3g0478971 RchiOBHm_Chr4g0428341
rosa_laevigata	RLG00000007163 RLG00000008655 RLG00000021006 RLG00000023614
rosa_multiflora	Rmu_co8301713.1_g000001 Rmu_co8364797.1_g000001 Rmu_sc0005645.1_g000005 Rmu_sc0011715.1_g000001 Rmu_sc0031392.1_g000001 Rmu_ssc0000173.1_g000004
rosa_roxburghii	Rroxscaffold_2G00092040 Rroxscaffold_5G00352860 Rroxscaffold_6G00402860
rosa_rugosa	Rorug03G0169900 Rorug04G0224800
rosa_samantha	Rh2BG541800 Rh2DG550300 Rh3AG220900 Rh3BG253100 Rh3CG249600 Rh3DG245600 Rh4AG149700 Rh4AG281600 Rh4BG147000 Rh4BG287200 Rh4CG157000 Rh4CG302800 Rh4DG142700 Rh4DG284300
rosa_wichuraiana	Rw0G000440 Rw2G043640 Rw3G019870 Rw4G024450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	183
AatII	GACGTC	1 cut(s)	126
Acc36I	ACCTGC	1 cut(s)	226
AccB1I	GGYRCC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	4 cut(s)	36, 49, 189, 210
AciI	CCGC	1 cut(s)	49
AclWI	GGATC	3 cut(s)	113, 259, 272
AcsI	RAATTY	1 cut(s)	311
AcuI	CTGAAG	2 cut(s)	40, 113
AcyI	GRCGYC	2 cut(s)	123, 138
AfaI	GTAC	2 cut(s)	31, 181
AfiI	CCNNNNNNNGG	1 cut(s)	410
AflII	CTTAAG	1 cut(s)	479
AgsI	TTSAA	4 cut(s)	84, 297, 346, 425
AjnI	CCWGG	1 cut(s)	409
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
Alw21I	GWGCWC	2 cut(s)	147, 305
Alw26I	GTCTC	2 cut(s)	23, 30
Alw44I	GTGCAC	2 cut(s)	143, 301
AlwI	GGATC	3 cut(s)	113, 259, 272
AoxI	GGCC	2 cut(s)	51, 354
ApaLI	GTGCAC	2 cut(s)	143, 301
ApeKI	GCWGC	2 cut(s)	289, 391
ApoI	RAATTY	1 cut(s)	311
AspLEI	GCGC	3 cut(s)	140, 210, 212
AspS9I	GGNCC	2 cut(s)	51, 401
AsuHPI	GGTGA	2 cut(s)	193, 380
AvaII	GGWCC	1 cut(s)	401
AxyI	CCTNAGG	1 cut(s)	396
BaeGI	GKGCMC	2 cut(s)	147, 305
BamHI	GGATCC	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	137
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	2 cut(s)	147, 305
BbvCI	CCTCAGC	1 cut(s)	351
BbvI	GCAGC	2 cut(s)	301, 403
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	2 cut(s)	125, 151
BciT130I	CCWGG	1 cut(s)	411
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	2 cut(s)	23, 30
BfmI	CTRYAG	1 cut(s)	100
BfoI	RGCGCY	1 cut(s)	141
BfrI	CTTAAG	1 cut(s)	479
BfuAI	ACCTGC	1 cut(s)	226
BisI	GCNGC	2 cut(s)	290, 392
BlsI	GCNGC	2 cut(s)	291, 393
Bme1390I	CCNGG	1 cut(s)	411
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	2 cut(s)	51, 401
BmiI	GGNNCC	4 cut(s)	139, 266, 402, 403
BmrFI	CCNGG	1 cut(s)	411
BpiI	GAAGAC	1 cut(s)	101
Bpu10I	CCTNAGC	1 cut(s)	351
BsaHI	GRCGYC	2 cut(s)	123, 138
BsaI	GGTCTC	2 cut(s)	23, 30
BsaJI	CCNNGG	2 cut(s)	172, 357
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	187
Bse21I	CCTNAGG	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	411
BseDI	CCNNGG	2 cut(s)	172, 357
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMII	CTCAG	3 cut(s)	34, 297, 342
BseNI	ACTGG	1 cut(s)	187
BsePI	GCGCGC	1 cut(s)	208
BseSI	GKGCMC	2 cut(s)	147, 305
BseXI	GCAGC	2 cut(s)	301, 403
BsgI	GTGCAG	2 cut(s)	308, 450
Bsh1236I	CGCG	4 cut(s)	36, 49, 189, 210
BshFI	GGCC	2 cut(s)	53, 356
BshNI	GGYRCC	1 cut(s)	137
BsiHKAI	GWGCWC	2 cut(s)	147, 305
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	414
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	2 cut(s)	23, 30
BsmFI	GGGAC	1 cut(s)	414
BsnI	GGCC	2 cut(s)	53, 356
Bso31I	GGTCTC	2 cut(s)	23, 30
Bsp1286I	GDGCHC	2 cut(s)	147, 305
Bsp143I	GATC	5 cut(s)	37, 105, 264, 337, 475
Bsp19I	CCATGG	1 cut(s)	172
Bsp68I	TCGCGA	1 cut(s)	36
BspACI	CCGC	1 cut(s)	49
BspANI	GGCC	2 cut(s)	53, 356
BspCNI	CTCAG	3 cut(s)	33, 298, 343
BspFNI	CGCG	4 cut(s)	36, 49, 189, 210
BspLI	GGNNCC	4 cut(s)	139, 266, 402, 403
BspMI	ACCTGC	1 cut(s)	226
BspPI	GGATC	3 cut(s)	113, 259, 272
BspT107I	GGYRCC	1 cut(s)	137
BspTI	CTTAAG	1 cut(s)	479
BspTNI	GGTCTC	2 cut(s)	23, 30
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	172, 357
BssHII	GCGCGC	1 cut(s)	208
BssMI	GATC	5 cut(s)	37, 105, 264, 337, 475
BssNI	GRCGYC	2 cut(s)	123, 138
BssT1I	CCWWGG	2 cut(s)	172, 357
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	2 cut(s)	17, 445
Bst6I	CTCTTC	2 cut(s)	47, 254
BstACI	GRCGYC	2 cut(s)	123, 138
BstAFI	CTTAAG	1 cut(s)	479
BstC8I	GCNNGC	3 cut(s)	6, 51, 210
BstDEI	CTNAG	4 cut(s)	20, 306, 351, 396
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	72
BstFNI	CGCG	4 cut(s)	36, 49, 189, 210
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	3 cut(s)	140, 210, 212
BstKTI	GATC	5 cut(s)	40, 108, 267, 340, 478
BstMAI	GTCTC	2 cut(s)	23, 30
BstMBI	GATC	5 cut(s)	37, 105, 264, 337, 475
BstMWI	GCNNNNNNNGC	2 cut(s)	280, 289
BstNI	CCWGG	1 cut(s)	411
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	409
BstSFI	CTRYAG	1 cut(s)	100
BstSLI	GKGCMC	2 cut(s)	147, 305
BstUI	CGCG	4 cut(s)	36, 49, 189, 210
BstV1I	GCAGC	2 cut(s)	301, 403
BstV2I	GAAGAC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	264
BstXI	CCANNNNNNTGG	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	264
Bsu36I	CCTNAGG	1 cut(s)	396
BsuRI	GGCC	2 cut(s)	53, 356
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	303
BtuMI	TCGCGA	1 cut(s)	36
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	3 cut(s)	6, 51, 210
CfoI	GCGC	3 cut(s)	140, 210, 212
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	2 cut(s)	51, 401
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	2 cut(s)	30, 180
CviAII	CATG	4 cut(s)	173, 269, 284, 436
CviJI	RGCY	8 cut(s)	8, 53, 292, 350, 356, 394, 409, 489
CviKI_1	RGCY	8 cut(s)	8, 53, 292, 350, 356, 394, 409, 489
CviQI	GTAC	2 cut(s)	30, 180
DdeI	CTNAG	4 cut(s)	20, 306, 351, 396
DinI	GGCGCC	1 cut(s)	139
DpnI	GATC	5 cut(s)	39, 107, 266, 339, 477
DpnII	GATC	5 cut(s)	37, 105, 264, 337, 475
DrdI	GACNNNNNNGTC	1 cut(s)	183
DseDI	GACNNNNNNGTC	1 cut(s)	183
Eam1104I	CTCTTC	2 cut(s)	47, 254
EarI	CTCTTC	2 cut(s)	47, 254
Eco130I	CCWWGG	2 cut(s)	172, 357
Eco31I	GGTCTC	2 cut(s)	23, 30
Eco47I	GGWCC	1 cut(s)	401
Eco57I	CTGAAG	2 cut(s)	40, 113
Eco81I	CCTNAGG	1 cut(s)	396
EcoO109I	RGGNCCY	1 cut(s)	401
EcoRI	GAATTC	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	409
EcoT14I	CCWWGG	2 cut(s)	172, 357
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
ErhI	CCWWGG	2 cut(s)	172, 357
FaeI	CATG	4 cut(s)	176, 272, 287, 439
FaiI	YATR	6 cut(s)	117, 155, 174, 270, 285, 437
FaqI	GGGAC	1 cut(s)	414
FatI	CATG	4 cut(s)	172, 268, 283, 435
FauI	CCCGC	1 cut(s)	42
FbaI	TGATCA	1 cut(s)	337
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	290, 392
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	2 cut(s)	290, 392
GlaI	GCGC	3 cut(s)	139, 209, 211
GluI	GCNGC	2 cut(s)	290, 392
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	2 cut(s)	53, 356
HapII	CCGG	1 cut(s)	5
HgaI	GACGC	1 cut(s)	178
HhaI	GCGC	3 cut(s)	140, 210, 212
Hin1I	GRCGYC	2 cut(s)	123, 138
Hin1II	CATG	4 cut(s)	176, 272, 287, 439
Hin6I	GCGC	3 cut(s)	138, 208, 210
HinP1I	GCGC	3 cut(s)	138, 208, 210
HincII	GTYRAC	2 cut(s)	121, 133
HindII	GTYRAC	2 cut(s)	121, 133
HpaI	GTTAAC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	2 cut(s)	193, 380
Hpy166II	GTNNAC	4 cut(s)	121, 133, 145, 303
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	4 cut(s)	35, 58, 193, 256
Hpy8I	GTNNAC	4 cut(s)	121, 133, 145, 303
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	5 cut(s)	58, 64, 303, 340, 419
HpyCH4III	ACNGT	2 cut(s)	17, 445
HpyCH4IV	ACGT	3 cut(s)	123, 178, 198
HpyCH4V	TGCA	4 cut(s)	145, 289, 303, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	280, 289
HpyF3I	CTNAG	4 cut(s)	20, 306, 351, 396
HpySE526I	ACGT	3 cut(s)	123, 178, 198
Hsp92I	GRCGYC	2 cut(s)	123, 138
Hsp92II	CATG	4 cut(s)	176, 272, 287, 439
HspAI	GCGC	3 cut(s)	138, 208, 210
KasI	GGCGCC	1 cut(s)	137
KflI	GGGWCCC	1 cut(s)	401
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Ksp22I	TGATCA	1 cut(s)	337
KspAI	GTTAAC	1 cut(s)	133
Kzo9I	GATC	5 cut(s)	37, 105, 264, 337, 475
LmnI	GCTCC	1 cut(s)	280
Lsp1109I	GCAGC	2 cut(s)	301, 403
MaeII	ACGT	3 cut(s)	123, 178, 198
MaeIII	GTNAC	3 cut(s)	68, 199, 445
MalI	GATC	5 cut(s)	39, 107, 266, 339, 477
MboI	GATC	5 cut(s)	37, 105, 264, 337, 475
MboII	GAAGA	5 cut(s)	34, 73, 106, 271, 337
MflI	RGATCY	1 cut(s)	264
MhlI	GDGCHC	2 cut(s)	147, 305
MluCI	AATT	1 cut(s)	311
Mly113I	GGCGCC	1 cut(s)	138
MnlI	CCTC	8 cut(s)	87, 255, 301, 315, 346, 364, 381, 479
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	2 cut(s)	132, 480
MslI	CAYNNNNRTG	2 cut(s)	218, 273
MspCI	CTTAAG	1 cut(s)	479
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	411
MvaI	CCWGG	1 cut(s)	411
MvnI	CGCG	4 cut(s)	36, 49, 189, 210
MwoI	GCNNNNNNNGC	2 cut(s)	280, 289
NaeI	GCCGGC	1 cut(s)	6
NarI	GGCGCC	1 cut(s)	138
NcoI	CCATGG	1 cut(s)	172
NdeII	GATC	5 cut(s)	37, 105, 264, 337, 475
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	4 cut(s)	176, 272, 287, 439
NlaIV	GGNNCC	4 cut(s)	139, 266, 402, 403
NmuCI	GTSAC	1 cut(s)	199
NruI	TCGCGA	1 cut(s)	36
NspI	RCATGY	1 cut(s)	287
PauI	GCGCGC	1 cut(s)	208
PdiI	GCCGGC	1 cut(s)	6
PflFI	GACNNNGTC	2 cut(s)	15, 116
PkrI	GCNGC	2 cut(s)	291, 393
PluTI	GGCGCC	1 cut(s)	141
PpuMI	RGGWCCY	1 cut(s)	401
Psp5II	RGGWCCY	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	4 cut(s)	139, 266, 402, 403
PspPI	GGNCC	2 cut(s)	51, 401
PspPPI	RGGWCCY	1 cut(s)	401
PsuI	RGATCY	1 cut(s)	264
PsyI	GACNNNGTC	2 cut(s)	15, 116
PteI	GCGCGC	1 cut(s)	208
RruI	TCGCGA	1 cut(s)	36
RsaI	GTAC	2 cut(s)	31, 181
RsaNI	GTAC	2 cut(s)	30, 180
RseI	CAYNNNNRTG	2 cut(s)	218, 273
SalI	GTCGAC	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	132, 480
SatI	GCNGC	2 cut(s)	290, 392
Sau3AI	GATC	5 cut(s)	37, 105, 264, 337, 475
Sau96I	GGNCC	2 cut(s)	51, 401
ScrFI	CCNGG	1 cut(s)	411
SduI	GDGCHC	2 cut(s)	147, 305
SfcI	CTRYAG	1 cut(s)	100
SfoI	GGCGCC	1 cut(s)	139
SinI	GGWCC	1 cut(s)	401
SmiMI	CAYNNNNRTG	2 cut(s)	218, 273
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	1 cut(s)	311
SsiI	CCGC	1 cut(s)	49
SspDI	GGCGCC	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	409
StyI	CCWWGG	2 cut(s)	172, 357
TaaI	ACNGT	2 cut(s)	17, 445
TaiI	ACGT	3 cut(s)	126, 181, 201
TaqI	TCGA	1 cut(s)	120
TasI	AATT	1 cut(s)	311
Tru1I	TTAA	2 cut(s)	132, 480
Tru9I	TTAA	2 cut(s)	132, 480
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	2 cut(s)	289, 391
Tsp45I	GTSAC	1 cut(s)	199
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	1 cut(s)	310
Tth111I	GACNNNGTC	2 cut(s)	15, 116
Vha464I	CTTAAG	1 cut(s)	479
VneI	GTGCAC	2 cut(s)	143, 301
VpaK11BI	GGWCC	1 cut(s)	401
XapI	RAATTY	1 cut(s)	311
XceI	RCATGY	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	120
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.