AT1G10010

Amino acid permease

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
3265886 .. 3268823
2938 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G10010.2

Sequence Viewer

Length: 1428 bp
ATGGACGCATACAACAATCCCTCGGCGGTGGAGTCGGGTGACGCCGCCGTGAAAAGCGTCGACGACGATGGTCGAGAGAAGAGAACGGGAACATTTTGGACGGCGAGTGCGCACATAATCACGGCGGTCATAGGCTCAGGGGTGCTGTCGTTGGCTTGGGCTATAGCACAGCTTGGTTGGGTGGCAGGAACCACAGTTTTGGTCGCTTTCGCCATCATTACTTACTACACGTCCACCTTGCTCGCCGACTGTTACCGTTCGCCGGACTCCATCACCGGAACACGCAACTATAATTACATGGGCGTCGTCCGATCTTACCTTGGTGGTAAAAAGGTTCAGCTATGTGGAGTGGCACAGTACGTGAATCTCGTAGGGGTCACTATTGGTTACACCATCACTGCCTCCATAAGCTTAGTAGCGATTGGGAAATCAAATTGTTATCATGACAAGGGACATAAAGCGAAATGTTCTGTATCGAATTATCCATACATGGCGGCATTTGGGATCGTCCAGATCATTCTGAGCCAGCTTCCTAACTTCCACAAGCTCTCTTTCCTATCCATCATCGCCGCGGTTATGTCCTTCTCTTATGCGTCTATCGGAATAGGCCTAGCCATCGCTACTGTAGCAAGTGGGAAGATTGGTAAGACAGAATTGACAGGGACAGTGATAGGTGTGGACGTAACTGCGTCTGAAAAAGTTTGGAAATTGTTTCAAGCGATTGGAGACATTGCCTTTTCATACGCTTTTACCACTATTCTCATCGAGATTCAGGACACATTGAGATCAAGCCCACCAGAGAACAAAGTGATGAAACGAGCAAGTCTTGTCGGAGTCTCAACCACAACTGTTTTCTACATCTTGTGTGGTTGCATCGGATATGCTGCGTTCGGCAACCAAGCCCCTGGTGACTTCCTTACCGATTTTGGTTTTTACGAACCTTATTGGCTCATCGACTTTGCCAATGCTTGCATTGCTCTCCATCTAATAGGTGCCTATCAGGTGTATGCGCAGCCGTTTTTCCAGTTTGTTGAGGAAAACTGCAACAAAAAATGGCCTCAAAGCAATTTCATCAACAAAGAATACTCGTCAAAGGTTCCTTTGCTTGGAAAATGTCGTGTCAACCTCTTCAGACTGGTTTGGAGGACATGCTATGTTGTTTTGACAACATTTGTAGCAATGATATTCCCCTTCTTCAATGCGATCTTGGGTTTGCTAGGGGCATTCGCGTTCTGGCCACTCACAGTTTATTTTCCGGTGGCAATGCACATTGCGCAGGCTAAAGTCAAGAAGTATTCTCGTAGATGGTTGGCCTTGAACCTCCTCGTATTGGTTTGCTTGATCGTCTCGGCCCTTGCCGCCGTAGGATCCATCATTGGCTTAATTAATAGTGTCAAGTCATACAAGCCCTTCAAGAATTTAGACTAG

Protein Analysis

475

Amino Acids

51.81

Weight (kDa)

9.11

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 29 - 463 1.1e-122 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 3 cut(s) 111, 1011, 1275
AccB1I GGYRCC 1 cut(s) 992
AccI GTMKAC 1 cut(s) 60
AccII CGCG 2 cut(s) 572, 1229
AciI CCGC 7 cut(s) 26, 45, 125, 494, 570, 572, 1359
AclWI GGATC 3 cut(s) 512, 1362, 1375
AcoI YGGCCR 1 cut(s) 1235
AcsI RAATTY 1 cut(s) 1417
AcuI CTGAAG 1 cut(s) 1114
AcyI GRCGYC 2 cut(s) 42, 303
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 3 cut(s) 262, 1106, 1330
AflIII ACRYGT 1 cut(s) 228
AgsI TTSAA 4 cut(s) 716, 1198, 1318, 1414
AjiI CACGTC 1 cut(s) 231
AjnI CCWGG 1 cut(s) 904
AluBI AGCT 5 cut(s) 172, 340, 411, 529, 547
AluI AGCT 5 cut(s) 172, 340, 411, 529, 547
Alw26I GTCTC 3 cut(s) 720, 841, 1351
AlwI GGATC 3 cut(s) 512, 1362, 1375
AoxI GGCC 5 cut(s) 607, 1055, 1235, 1311, 1350
ApeKI GCWGC 2 cut(s) 884, 1012
ApoI RAATTY 1 cut(s) 1417
AseI ATTAAT 1 cut(s) 1386
AspLEI GCGC 3 cut(s) 112, 1012, 1276
AspS9I GGNCC 1 cut(s) 1351
AsuHPI GGTGA 3 cut(s) 50, 265, 920
BalI TGGCCA 1 cut(s) 1237
BamHI GGATCC 1 cut(s) 1367
BanI GGYRCC 1 cut(s) 992
BbvI GCAGC 2 cut(s) 871, 1024
BccI CCATC 9 cut(s) 62, 221, 278, 401, 569, 623, 990, 1299, 1379
BceAI ACGGC 5 cut(s) 32, 117, 138, 1000, 1346
BciT130I CCWGG 1 cut(s) 906
BcoDI GTCTC 3 cut(s) 720, 841, 1351
BfaI CTAG 3 cut(s) 611, 1217, 1426
BfmI CTRYAG 2 cut(s) 162, 624
BisI GCNGC 6 cut(s) 45, 495, 570, 885, 1013, 1359
BlsI GCNGC 6 cut(s) 46, 496, 571, 886, 1014, 1360
Bme1390I CCNGG 1 cut(s) 906
BmgBI CACGTC 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 1351
BmiI GGNNCC 4 cut(s) 190, 994, 1098, 1369
BmrFI CCNGG 1 cut(s) 906
BmsI GCATC 1 cut(s) 882
BoxI GACNNNNGTC 1 cut(s) 69
Bpu10I CCTNAGC 1 cut(s) 136
BsaAI YACGTR 1 cut(s) 361
BsaHI GRCGYC 2 cut(s) 42, 303
BsaJI CCNNGG 4 cut(s) 21, 319, 570, 904
BsaWI WCCGGW 2 cut(s) 275, 1255
Bsc4I CCNNNNNNNGG 3 cut(s) 262, 1106, 1330
Bse1I ACTGG 2 cut(s) 1024, 1140
Bse3DI GCAATG 5 cut(s) 729, 972, 1185, 1269, 1269
BseBI CCWGG 1 cut(s) 906
BseDI CCNNGG 4 cut(s) 21, 319, 570, 904
BseLI CCNNNNNNNGG 3 cut(s) 262, 1106, 1330
BseMI GCAATG 5 cut(s) 729, 972, 1185, 1269, 1269
BseMII CTCAG 2 cut(s) 150, 512
BseNI ACTGG 2 cut(s) 1024, 1140
BseRI GAGGAG 1 cut(s) 1313
BseXI GCAGC 2 cut(s) 871, 1024
Bsh1236I CGCG 2 cut(s) 572, 1229
BshFI GGCC 5 cut(s) 609, 1057, 1237, 1313, 1352
BshNI GGYRCC 1 cut(s) 992
BsiSI CCGG 3 cut(s) 263, 276, 1256
BslFI GGGAC 2 cut(s) 465, 676
BslI CCNNNNNNNGG 3 cut(s) 262, 1106, 1330
BsmAI GTCTC 3 cut(s) 720, 841, 1351
BsmBI CGTCTC 1 cut(s) 1351
BsmFI GGGAC 2 cut(s) 465, 676
BsmI GAATGC 1 cut(s) 1223
BsnI GGCC 5 cut(s) 609, 1057, 1237, 1313, 1352
Bsp143I GATC 7 cut(s) 311, 504, 513, 785, 1203, 1341, 1367
BspACI CCGC 7 cut(s) 26, 45, 125, 494, 570, 572, 1359
BspANI GGCC 5 cut(s) 609, 1057, 1237, 1313, 1352
BspCNI CTCAG 2 cut(s) 149, 513
BspFNI CGCG 2 cut(s) 572, 1229
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 4 cut(s) 190, 994, 1098, 1369
BspPI GGATC 3 cut(s) 512, 1362, 1375
BspT107I GGYRCC 1 cut(s) 992
BsrDI GCAATG 5 cut(s) 729, 972, 1185, 1269, 1269
BsrI ACTGG 2 cut(s) 1024, 1140
BssECI CCNNGG 4 cut(s) 21, 319, 570, 904
BssMI GATC 7 cut(s) 311, 504, 513, 785, 1203, 1341, 1367
BssNI GRCGYC 2 cut(s) 42, 303
BssT1I CCWWGG 1 cut(s) 319
Bst2UI CCWGG 1 cut(s) 906
Bst4CI ACNGT 8 cut(s) 196, 251, 257, 357, 625, 667, 850, 1246
Bst6I CTCTTC 2 cut(s) 74, 1133
BstACI GRCGYC 2 cut(s) 42, 303
BstBAI YACGTR 1 cut(s) 361
BstC8I GCNNGC 4 cut(s) 243, 527, 970, 1278
BstDEI CTNAG 3 cut(s) 136, 412, 521
BstDSI CCRYGG 1 cut(s) 570
BstFNI CGCG 2 cut(s) 572, 1229
BstHHI GCGC 3 cut(s) 112, 1012, 1276
BstKTI GATC 7 cut(s) 314, 507, 516, 788, 1206, 1344, 1370
BstMAI GTCTC 3 cut(s) 720, 841, 1351
BstMBI GATC 7 cut(s) 311, 504, 513, 785, 1203, 1341, 1367
BstMWI GCNNNNNNNGC 4 cut(s) 626, 974, 1273, 1358
BstNI CCWGG 1 cut(s) 906
BstNSI RCATGY 1 cut(s) 1152
BstPAI GACNNNNGTC 1 cut(s) 69
BstSCI CCNGG 1 cut(s) 904
BstSFI CTRYAG 2 cut(s) 162, 624
BstUI CGCG 2 cut(s) 572, 1229
BstV1I GCAGC 2 cut(s) 871, 1024
BstX2I RGATCY 1 cut(s) 1367
BstXI CCANNNNNNTGG 2 cut(s) 199, 905
BstYI RGATCY 1 cut(s) 1367
BsuRI GGCC 5 cut(s) 609, 1057, 1237, 1313, 1352
BtgI CCRYGG 1 cut(s) 570
BtgZI GCGATG 2 cut(s) 550, 601
BtrI CACGTC 1 cut(s) 231
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 2 cut(s) 396, 672
Cac8I GCNNGC 4 cut(s) 243, 527, 970, 1278
CciI TCATGA 1 cut(s) 442
CfoI GCGC 3 cut(s) 112, 1012, 1276
Cfr13I GGNCC 1 cut(s) 1351
Cfr42I CCGCGG 1 cut(s) 573
CseI GACGC 6 cut(s) 14, 46, 50, 292, 582, 678
Csp6I GTAC 1 cut(s) 358
CviAII CATG 4 cut(s) 298, 443, 490, 1149
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 3 cut(s) 136, 412, 521
DpnI GATC 7 cut(s) 313, 506, 515, 787, 1205, 1343, 1369
DpnII GATC 7 cut(s) 311, 504, 513, 785, 1203, 1341, 1367
EaeI YGGCCR 1 cut(s) 1235
Eam1104I CTCTTC 2 cut(s) 74, 1133
EarI CTCTTC 2 cut(s) 74, 1133
Eco130I CCWWGG 1 cut(s) 319
Eco147I AGGCCT 1 cut(s) 609
Eco57I CTGAAG 1 cut(s) 1114
EcoRII CCWGG 1 cut(s) 904
EcoT14I CCWWGG 1 cut(s) 319
ErhI CCWWGG 1 cut(s) 319
Esp3I CGTCTC 1 cut(s) 1351
FaeI CATG 4 cut(s) 301, 446, 493, 1152
FaqI GGGAC 2 cut(s) 465, 676
FatI CATG 4 cut(s) 297, 442, 489, 1148
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 6 cut(s) 45, 495, 570, 885, 1013, 1359
Fsp4HI GCNGC 6 cut(s) 45, 495, 570, 885, 1013, 1359
FspAI RTGCGCAY 1 cut(s) 111
FspBI CTAG 3 cut(s) 611, 1217, 1426
FspI TGCGCA 3 cut(s) 111, 1011, 1275
GlaI GCGC 3 cut(s) 111, 1011, 1275
GluI GCNGC 6 cut(s) 45, 495, 570, 885, 1013, 1359
HaeIII GGCC 5 cut(s) 609, 1057, 1237, 1313, 1352
HapII CCGG 3 cut(s) 263, 276, 1256
HgaI GACGC 6 cut(s) 14, 46, 50, 292, 582, 678
HhaI GCGC 3 cut(s) 112, 1012, 1276
Hin1I GRCGYC 2 cut(s) 42, 303
Hin1II CATG 4 cut(s) 301, 446, 493, 1152
Hin6I GCGC 3 cut(s) 110, 1010, 1274
HinP1I GCGC 3 cut(s) 110, 1010, 1274
HincII GTYRAC 2 cut(s) 61, 1123
HindII GTYRAC 2 cut(s) 61, 1123
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 5 cut(s) 32, 266, 364, 769, 834
HpaII CCGG 3 cut(s) 263, 276, 1256
HphI GGTGA 3 cut(s) 50, 265, 920
Hpy166II GTNNAC 4 cut(s) 61, 234, 679, 1123
Hpy188I TCNGA 7 cut(s) 311, 522, 602, 694, 833, 878, 1133
Hpy188III TCNNGA 7 cut(s) 74, 443, 511, 766, 773, 1288, 1414
Hpy8I GTNNAC 4 cut(s) 61, 234, 679, 1123
Hpy99I CGWCG 4 cut(s) 62, 65, 68, 308
HpyAV CCTTC 3 cut(s) 592, 1201, 1420
HpyCH4III ACNGT 8 cut(s) 196, 251, 257, 357, 625, 667, 850, 1246
HpyCH4IV ACGT 3 cut(s) 230, 360, 681
HpyCH4V TGCA 4 cut(s) 873, 972, 1044, 1267
HpyF10VI GCNNNNNNNGC 4 cut(s) 626, 974, 1273, 1358
HpyF3I CTNAG 3 cut(s) 136, 412, 521
HpySE526I ACGT 3 cut(s) 230, 360, 681
Hsp92I GRCGYC 2 cut(s) 42, 303
Hsp92II CATG 4 cut(s) 301, 446, 493, 1152
HspAI GCGC 3 cut(s) 110, 1010, 1274
KspI CCGCGG 1 cut(s) 573
Kzo9I GATC 7 cut(s) 311, 504, 513, 785, 1203, 1341, 1367
Lsp1109I GCAGC 2 cut(s) 871, 1024
LweI GCATC 1 cut(s) 882
MaeI CTAG 3 cut(s) 611, 1217, 1426
MaeII ACGT 3 cut(s) 230, 360, 681
MaeIII GTNAC 6 cut(s) 38, 251, 376, 386, 682, 908
MalI GATC 7 cut(s) 313, 506, 515, 787, 1205, 1343, 1369
MboI GATC 7 cut(s) 311, 504, 513, 785, 1203, 1341, 1367
MboII GAAGA 4 cut(s) 91, 649, 1120, 1186
MflI RGATCY 1 cut(s) 1367
MlsI TGGCCA 1 cut(s) 1237
MluCI AATT 8 cut(s) 292, 433, 478, 653, 707, 1066, 1383, 1417
MluNI TGGCCA 1 cut(s) 1237
MlyI GAGTC 3 cut(s) 41, 260, 843
MmeI TCCRAC 1 cut(s) 811
MnlI CCTC 8 cut(s) 31, 412, 1027, 1068, 1136, 1137, 1331, 1334
Mox20I TGGCCA 1 cut(s) 1237
MscI TGGCCA 1 cut(s) 1237
MseI TTAA 2 cut(s) 1382, 1386
Msp20I TGGCCA 1 cut(s) 1237
MspA1I CMGCKG 1 cut(s) 572
MspI CCGG 3 cut(s) 263, 276, 1256
MspR9I CCNGG 1 cut(s) 906
Mva1269I GAATGC 1 cut(s) 1223
MvaI CCWGG 1 cut(s) 906
MvnI CGCG 2 cut(s) 572, 1229
MwoI GCNNNNNNNGC 4 cut(s) 626, 974, 1273, 1358
NdeII GATC 7 cut(s) 311, 504, 513, 785, 1203, 1341, 1367
NlaIII CATG 4 cut(s) 301, 446, 493, 1152
NlaIV GGNNCC 4 cut(s) 190, 994, 1098, 1369
NmeAIII GCCGAG 1 cut(s) 1328
NmuCI GTSAC 3 cut(s) 38, 376, 908
NsbI TGCGCA 3 cut(s) 111, 1011, 1275
NspI RCATGY 1 cut(s) 1152
PacI TTAATTAA 1 cut(s) 1386
PagI TCATGA 1 cut(s) 442
PceI AGGCCT 1 cut(s) 609
PcsI WCGNNNNNNNCGW 1 cut(s) 366
PctI GAATGC 1 cut(s) 1223
PfeI GAWTC 2 cut(s) 364, 769
PkrI GCNGC 6 cut(s) 46, 496, 571, 886, 1014, 1360
PleI GAGTC 3 cut(s) 40, 260, 842
PpsI GAGTC 3 cut(s) 40, 260, 842
Ppu21I YACGTR 1 cut(s) 361
PshAI GACNNNNGTC 1 cut(s) 69
PshBI ATTAAT 1 cut(s) 1386
Psp6I CCWGG 1 cut(s) 904
PspGI CCWGG 1 cut(s) 904
PspN4I GGNNCC 4 cut(s) 190, 994, 1098, 1369
PspPI GGNCC 1 cut(s) 1351
PsuI RGATCY 1 cut(s) 1367
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
SacII CCGCGG 1 cut(s) 573
SalI GTCGAC 1 cut(s) 59
SaqAI TTAA 2 cut(s) 1382, 1386
SatI GCNGC 6 cut(s) 45, 495, 570, 885, 1013, 1359
Sau3AI GATC 7 cut(s) 311, 504, 513, 785, 1203, 1341, 1367
Sau96I GGNCC 1 cut(s) 1351
SchI GAGTC 3 cut(s) 41, 260, 843
ScrFI CCNGG 1 cut(s) 906
SfaNI GCATC 1 cut(s) 882
SfcI CTRYAG 2 cut(s) 162, 624
Sfr303I CCGCGG 1 cut(s) 573
SgrBI CCGCGG 1 cut(s) 573
SgrDI CGTCGACG 1 cut(s) 59
Sse9I AATT 8 cut(s) 292, 433, 478, 653, 707, 1066, 1383, 1417
SseBI AGGCCT 1 cut(s) 609
SsiI CCGC 7 cut(s) 26, 45, 125, 494, 570, 572, 1359
SspMI CTAG 3 cut(s) 611, 1217, 1426
StuI AGGCCT 1 cut(s) 609
StyD4I CCNGG 1 cut(s) 904
StyI CCWWGG 1 cut(s) 319
TaaI ACNGT 8 cut(s) 196, 251, 257, 357, 625, 667, 850, 1246
TaiI ACGT 3 cut(s) 233, 363, 684
TaqI TCGA 5 cut(s) 60, 73, 476, 765, 954
TasI AATT 8 cut(s) 292, 433, 478, 653, 707, 1066, 1383, 1417
TauI GCSGC 4 cut(s) 47, 497, 572, 1361
TfiI GAWTC 2 cut(s) 364, 769
Tru1I TTAA 2 cut(s) 1382, 1386
Tru9I TTAA 2 cut(s) 1382, 1386
TscAI CASTG 2 cut(s) 403, 672
TseFI GTSAC 3 cut(s) 38, 376, 908
TseI GCWGC 2 cut(s) 884, 1012
Tsp45I GTSAC 3 cut(s) 38, 376, 908
TspDTI ATGAA 3 cut(s) 729, 827, 1060
TspRI CASTG 2 cut(s) 403, 672
VspI ATTAAT 1 cut(s) 1386
XapI RAATTY 1 cut(s) 1417
XceI RCATGY 1 cut(s) 1152
XmiI GTMKAC 1 cut(s) 60
XspI CTAG 3 cut(s) 611, 1217, 1426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.