Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001778

Physical Location & Seq

Genomic Coordinates Forward (+)

57309750 .. 57313481

Gene Structure 3732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG374100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGTGGCTATAAAGAGGTCTAACTGCTTCCACAGCAGTGATGGAAAAGATGAATGCCATGTGAACAGCAATCCTTATATGATTGCTTTTGGCATTGCAGAAATCATATTCTCCCAAATTGAAAACTTTGATCAGCTATGGTGGCTCTCCATTGTTGCTGCTGTCATGTCCTTCACTTACTCCTGTATTGGACTTGGCCTTGGAATTGGGAAAGTTGCAGAAACTGGAACAATTAGGGGAAGCATGACTGGAATAGACATTGGAACAGTGACAGAGACTCAAAAGATATGGAGGAGCTTCCAAGCACTTGGTGACATAGCCTTTGCCTACTCCTACTCTGTCATCCTGATTGAAATTCAGGACACTGTCAAATCCCCACCGTCCGAAGCCAAGACGATGAGGAAGGCGACTCTAGTCAGTGTGGCAACCACAACCCTTTTCTACATGCTGTGTGGCTGCATGGGCTATGCTGCTTTTGGGGATGCATCCCCCGGAAACCTCCTCACCGGTTTCGGTTTCTACAACCCTTACTGGCTCGTTGACATTGCCAATGCTGCCATAGTCATCCATCTTGTTGGAGCCTACCAAGTCTTTGTCCAACCCCTCTTTGCTTTTGTTGAGAAATCAGCAGCAGAGAAGTACCCAGATAGCCAATTCATCACCAAAAACATCAAAATCCAAATCCCTTGTGTCGGTCTTTACAACCTCAATATGTTCAGATTGGTGTGGAGGACACTGTTTGTGATCACAACCACTGTGATTTCCATGATCCTTCCATTCTTTAACGACGTTGTTGGACTTCTTGGCGCTTTGGGATTTTGGCCACTCACAGTATACTTCCCAGTGGAGATGTACATTGTCCAGAAGAGGATTCCAAAATGGAGCACCAAATGGCTTTGCCTCCAAACCCTAAGTGGTGCTTGCCTCATAATCACCATAGCTGCTGCTGCTGGCTCAATTGCCGGGGTGGTTTCGGACCTCAAGACCTACAAGCCATTCCAATCCAGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015318 GO:0015711 GO:0015802 GO:0015809 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

337

Amino Acids

37.17

Weight (kDa)

8.03

Isoelectric Point (pI)

39.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	1 - 324	9e-81	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10010 AT1G10010 AT1G58360
fragaria_vesca	FvH4_2g27660 FvH4_2g27660 FvH4_2g27660 FvH4_2g27660 FvH4_2g27661 FvH4_2g27661 FvH4_5g12780
malus_domestica	MD00G1140000.v1.1 MD08G1158200.v1.1 MD15G1343500.v1.1 MD15G1343600.v1.1 MD15G1343900.v1.1
prunus_persica	Prupe.1G491000_v2.0.a1 Prupe.1G491000_v2.0.a1 Prupe.1G491000_v2.0.a1 Prupe.1G491100_v2.0.a1 Prupe.1G491200_v2.0.a1 Prupe.1G491300_v2.0.a1
pyrus_communis	pycom08g05160 pycom12419g00300 pycom15g30720
rosa_chinensis	RchiOBHm_Chr6g0296481 RchiOBHm_Chr6g0296511
rosa_laevigata	RLG00000011686 RLG00000011687 RLG00000011688
rosa_multiflora	Rmu_sc0001146.1_g000005 Rmu_sc0004318.1_g000010 Rmu_sc0006174.1_g000011
rosa_roxburghii	Rroxscaffold_7G00171480 Rroxscaffold_7G00171490 Rroxscaffold_7G00178640 Rroxscaffold_7G00178650
rosa_rugosa	Rorug06G0262800
rosa_samantha	Rh6AG374100 Rh6AG374300 Rh6BG382700 Rh6BG382800 Rh6CG387500 Rh6CG387800 Rh6DG375300 Rh6DG375500
rosa_wichuraiana	Rw6G032630 Rw6G032640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	834
AclWI	GGATC	1 cut(s)	763
AcoI	YGGCCR	1 cut(s)	821
AcsI	RAATTY	1 cut(s)	354
AdeI	CACNNNGTG	1 cut(s)	311
AfaI	GTAC	2 cut(s)	641, 854
AfiI	CCNNNNNNNGG	1 cut(s)	692
AgeI	ACCGGT	1 cut(s)	506
AgsI	TTSAA	2 cut(s)	122, 353
AleI	CACNNNNGTG	1 cut(s)	36
AluBI	AGCT	4 cut(s)	136, 297, 941, 1008
AluI	AGCT	4 cut(s)	136, 297, 941, 1008
Alw21I	GWGCWC	1 cut(s)	887
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	1 cut(s)	763
AlwNI	CAGNNNCTG	1 cut(s)	224
AoxI	GGCC	2 cut(s)	196, 821
ApeKI	GCWGC	8 cut(s)	158, 456, 470, 554, 629, 941, 944, 947
ApoI	RAATTY	1 cut(s)	354
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
AsiGI	ACCGGT	1 cut(s)	506
AspLEI	GCGC	1 cut(s)	809
AspS9I	GGNCC	1 cut(s)	976
AsuC2I	CCSGG	2 cut(s)	492, 964
AsuHPI	GGTGA	4 cut(s)	323, 496, 652, 925
AvaII	GGWCC	1 cut(s)	976
BalI	TGGCCA	1 cut(s)	823
Bbv12I	GWGCWC	1 cut(s)	887
BbvI	GCAGC	8 cut(s)	145, 443, 457, 541, 641, 928, 931, 934
BccI	CCATC	2 cut(s)	35, 576
BclI	TGATCA	2 cut(s)	130, 744
BcnI	CCSGG	2 cut(s)	492, 964
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	413
BfoI	RGCGCY	1 cut(s)	810
BisI	GCNGC	8 cut(s)	159, 457, 471, 555, 630, 942, 945, 948
BlsI	GCNGC	8 cut(s)	160, 458, 472, 556, 631, 943, 946, 949
Bme1390I	CCNGG	2 cut(s)	492, 964
Bme18I	GGWCC	1 cut(s)	976
BmgT120I	GGNCC	1 cut(s)	976
BmiI	GGNNCC	1 cut(s)	580
BmrFI	CCNGG	2 cut(s)	492, 964
BmrI	ACTGGG	1 cut(s)	836
BmsI	GCATC	2 cut(s)	472, 494
BmuI	ACTGGG	1 cut(s)	836
BoxI	GACNNNNGTC	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	965
BpuMI	CCSGG	2 cut(s)	492, 964
BsaJI	CCNNGG	3 cut(s)	199, 490, 963
BsaWI	WCCGGW	1 cut(s)	506
Bsc4I	CCNNNNNNNGG	1 cut(s)	692
Bse118I	RCCGGY	1 cut(s)	506
Bse1I	ACTGG	4 cut(s)	229, 253, 536, 842
Bse3DI	GCAATG	2 cut(s)	93, 543
BseDI	CCNNGG	3 cut(s)	199, 490, 963
BseGI	GGATG	4 cut(s)	342, 485, 487, 564
BseLI	CCNNNNNNNGG	1 cut(s)	692
BseMI	GCAATG	2 cut(s)	93, 543
BseNI	ACTGG	4 cut(s)	229, 253, 536, 842
BseRI	GAGGAG	2 cut(s)	307, 491
BseXI	GCAGC	8 cut(s)	145, 443, 457, 541, 641, 928, 931, 934
BshFI	GGCC	2 cut(s)	198, 823
BshTI	ACCGGT	1 cut(s)	506
BsiHKAI	GWGCWC	1 cut(s)	887
BsiSI	CCGG	3 cut(s)	492, 507, 963
BslI	CCNNNNNNNGG	1 cut(s)	692
BsmAI	GTCTC	1 cut(s)	269
BsmI	GAATGC	1 cut(s)	59
BsnI	GGCC	2 cut(s)	198, 823
Bsp1286I	GDGCHC	1 cut(s)	887
Bsp1407I	TGTACA	1 cut(s)	852
Bsp143I	GATC	3 cut(s)	130, 744, 768
BspANI	GGCC	2 cut(s)	198, 823
BspLI	GGNNCC	1 cut(s)	580
BspPI	GGATC	1 cut(s)	763
BsrDI	GCAATG	2 cut(s)	93, 543
BsrFI	RCCGGY	1 cut(s)	506
BsrGI	TGTACA	1 cut(s)	852
BsrI	ACTGG	4 cut(s)	229, 253, 536, 842
BssAI	RCCGGY	1 cut(s)	506
BssECI	CCNNGG	3 cut(s)	199, 490, 963
BssMI	GATC	3 cut(s)	130, 744, 768
BssNAI	GTATAC	1 cut(s)	835
BssT1I	CCWWGG	1 cut(s)	199
Bst1107I	GTATAC	1 cut(s)	835
Bst4CI	ACNGT	6 cut(s)	268, 367, 381, 738, 757, 832
Bst6I	CTCTTC	1 cut(s)	860
BstAUI	TGTACA	1 cut(s)	852
BstC8I	GCNNGC	2 cut(s)	922, 952
BstDEI	CTNAG	1 cut(s)	911
BstF5I	GGATG	4 cut(s)	342, 485, 487, 564
BstH2I	RGCGCY	1 cut(s)	810
BstHHI	GCGC	1 cut(s)	809
BstKTI	GATC	3 cut(s)	133, 747, 771
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	3 cut(s)	130, 744, 768
BstMWI	GCNNNNNNNGC	5 cut(s)	33, 142, 462, 554, 947
BstNSI	RCATGY	1 cut(s)	448
BstPAI	GACNNNNGTC	1 cut(s)	413
BstSCI	CCNGG	2 cut(s)	490, 962
BstV1I	GCAGC	8 cut(s)	145, 443, 457, 541, 641, 928, 931, 934
BstXI	CCANNNNNNTGG	2 cut(s)	308, 575
BstZ17I	GTATAC	1 cut(s)	835
BsuRI	GGCC	2 cut(s)	198, 823
BtsCI	GGATG	4 cut(s)	342, 485, 487, 564
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	7 cut(s)	43, 273, 363, 424, 734, 753, 849
Cac8I	GCNNGC	2 cut(s)	922, 952
CaiI	CAGNNNCTG	1 cut(s)	224
CfoI	GCGC	1 cut(s)	809
Cfr10I	RCCGGY	1 cut(s)	506
Cfr13I	GGNCC	1 cut(s)	976
Csp6I	GTAC	2 cut(s)	640, 853
CspAI	ACCGGT	1 cut(s)	506
CviAII	CATG	6 cut(s)	59, 166, 244, 445, 460, 766
CviQI	GTAC	2 cut(s)	640, 853
DdeI	CTNAG	1 cut(s)	911
DpnI	GATC	3 cut(s)	132, 746, 770
DpnII	GATC	3 cut(s)	130, 744, 768
DraIII	CACNNNGTG	1 cut(s)	311
EaeI	YGGCCR	1 cut(s)	821
Eam1104I	CTCTTC	1 cut(s)	860
EarI	CTCTTC	1 cut(s)	860
Eco130I	CCWWGG	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	976
EcoT14I	CCWWGG	1 cut(s)	199
EcoT22I	ATGCAT	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	199
FaeI	CATG	6 cut(s)	62, 169, 247, 448, 463, 769
FalI	AAGNNNNNCTT	2 cut(s)	904, 936
FatI	CATG	6 cut(s)	58, 165, 243, 444, 459, 765
FbaI	TGATCA	2 cut(s)	130, 744
FblI	GTMKAC	1 cut(s)	834
Fnu4HI	GCNGC	8 cut(s)	159, 457, 471, 555, 630, 942, 945, 948
FokI	GGATG	4 cut(s)	329, 472, 494, 551
Fsp4HI	GCNGC	8 cut(s)	159, 457, 471, 555, 630, 942, 945, 948
FspBI	CTAG	1 cut(s)	413
GlaI	GCGC	1 cut(s)	808
GluI	GCNGC	8 cut(s)	159, 457, 471, 555, 630, 942, 945, 948
HaeII	RGCGCY	1 cut(s)	810
HaeIII	GGCC	2 cut(s)	198, 823
HapII	CCGG	3 cut(s)	492, 507, 963
HhaI	GCGC	1 cut(s)	809
Hin1II	CATG	6 cut(s)	62, 169, 247, 448, 463, 769
Hin6I	GCGC	1 cut(s)	807
HinP1I	GCGC	1 cut(s)	807
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HinfI	GANTC	3 cut(s)	277, 409, 871
HpaII	CCGG	3 cut(s)	492, 507, 963
HphI	GGTGA	4 cut(s)	323, 496, 652, 925
Hpy166II	GTNNAC	3 cut(s)	64, 541, 835
Hpy188I	TCNGA	3 cut(s)	385, 719, 976
Hpy188III	TCNNGA	4 cut(s)	346, 359, 862, 982
Hpy8I	GTNNAC	3 cut(s)	64, 541, 835
Hpy99I	CGWCG	1 cut(s)	791
HpyAV	CCTTC	3 cut(s)	181, 397, 782
HpyCH4III	ACNGT	6 cut(s)	268, 367, 381, 738, 757, 832
HpyCH4IV	ACGT	1 cut(s)	789
HpyCH4V	TGCA	4 cut(s)	98, 218, 459, 485
HpyF10VI	GCNNNNNNNGC	5 cut(s)	33, 142, 462, 554, 947
HpyF3I	CTNAG	1 cut(s)	911
HpySE526I	ACGT	1 cut(s)	789
Hsp92II	CATG	6 cut(s)	62, 169, 247, 448, 463, 769
HspAI	GCGC	1 cut(s)	807
Ksp22I	TGATCA	2 cut(s)	130, 744
Kzo9I	GATC	3 cut(s)	130, 744, 768
LmnI	GCTCC	3 cut(s)	294, 578, 882
Lsp1109I	GCAGC	8 cut(s)	145, 443, 457, 541, 641, 928, 931, 934
LweI	GCATC	2 cut(s)	472, 494
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	1 cut(s)	789
MaeIII	GTNAC	2 cut(s)	268, 311
MalI	GATC	3 cut(s)	132, 746, 770
MboI	GATC	3 cut(s)	130, 744, 768
MboII	GAAGA	1 cut(s)	877
MfeI	CAATTG	1 cut(s)	957
MhlI	GDGCHC	1 cut(s)	887
MlsI	TGGCCA	1 cut(s)	823
MluCI	AATT	6 cut(s)	117, 204, 231, 354, 653, 957
MluNI	TGGCCA	1 cut(s)	823
MlyI	GAGTC	2 cut(s)	271, 403
MmeI	TCCRAC	3 cut(s)	556, 622, 775
Mox20I	TGGCCA	1 cut(s)	823
Mph1103I	ATGCAT	1 cut(s)	487
MscI	TGGCCA	1 cut(s)	823
MseI	TTAA	1 cut(s)	783
MslI	CAYNNNNRTG	1 cut(s)	36
Msp20I	TGGCCA	1 cut(s)	823
MspI	CCGG	3 cut(s)	492, 507, 963
MspR9I	CCNGG	2 cut(s)	492, 964
MunI	CAATTG	1 cut(s)	957
Mva1269I	GAATGC	1 cut(s)	59
MwoI	GCNNNNNNNGC	5 cut(s)	33, 142, 462, 554, 947
NciI	CCSGG	2 cut(s)	492, 964
NdeII	GATC	3 cut(s)	130, 744, 768
NlaIII	CATG	6 cut(s)	62, 169, 247, 448, 463, 769
NlaIV	GGNNCC	1 cut(s)	580
NmuCI	GTSAC	2 cut(s)	268, 311
NsiI	ATGCAT	1 cut(s)	487
NspI	RCATGY	1 cut(s)	448
OliI	CACNNNNGTG	1 cut(s)	36
PctI	GAATGC	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	871
PflFI	GACNNNGTC	1 cut(s)	365
PinAI	ACCGGT	1 cut(s)	506
PkrI	GCNGC	8 cut(s)	160, 458, 472, 556, 631, 943, 946, 949
PleI	GAGTC	2 cut(s)	271, 403
PpsI	GAGTC	2 cut(s)	271, 403
PshAI	GACNNNNGTC	1 cut(s)	413
PspN4I	GGNNCC	1 cut(s)	580
PspPI	GGNCC	1 cut(s)	976
PstNI	CAGNNNCTG	1 cut(s)	224
PsyI	GACNNNGTC	1 cut(s)	365
RsaI	GTAC	2 cut(s)	641, 854
RsaNI	GTAC	2 cut(s)	640, 853
RseI	CAYNNNNRTG	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	783
SatI	GCNGC	8 cut(s)	159, 457, 471, 555, 630, 942, 945, 948
Sau3AI	GATC	3 cut(s)	130, 744, 768
Sau96I	GGNCC	1 cut(s)	976
SchI	GAGTC	2 cut(s)	271, 403
ScrFI	CCNGG	2 cut(s)	492, 964
SduI	GDGCHC	1 cut(s)	887
SfaNI	GCATC	2 cut(s)	472, 494
SinI	GGWCC	1 cut(s)	976
SmiMI	CAYNNNNRTG	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	980
SmoI	CTYRAG	1 cut(s)	980
Sse9I	AATT	6 cut(s)	117, 204, 231, 354, 653, 957
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	2 cut(s)	490, 962
StyI	CCWWGG	1 cut(s)	199
TaaI	ACNGT	6 cut(s)	268, 367, 381, 738, 757, 832
TaiI	ACGT	1 cut(s)	792
TaqII	GACCGA	1 cut(s)	683
TasI	AATT	6 cut(s)	117, 204, 231, 354, 653, 957
TatI	WGTACW	1 cut(s)	852
TfiI	GAWTC	1 cut(s)	871
Tru1I	TTAA	1 cut(s)	783
Tru9I	TTAA	1 cut(s)	783
TscAI	CASTG	7 cut(s)	43, 273, 370, 424, 741, 760, 849
TseFI	GTSAC	2 cut(s)	268, 311
TseI	GCWGC	8 cut(s)	158, 456, 470, 554, 629, 941, 944, 947
Tsp45I	GTSAC	2 cut(s)	268, 311
TspDTI	ATGAA	2 cut(s)	66, 646
TspRI	CASTG	7 cut(s)	43, 273, 370, 424, 741, 760, 849
Tth111I	GACNNNGTC	1 cut(s)	365
VpaK11BI	GGWCC	1 cut(s)	976
XapI	RAATTY	1 cut(s)	354
XceI	RCATGY	1 cut(s)	448
XcmI	CCANNNNNNNNNTGG	2 cut(s)	38, 911
XmiI	GTMKAC	1 cut(s)	834
XspI	CTAG	1 cut(s)	413
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.