Rh6AG374300

Amino acid permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001778
Physical Location & Seq
Forward (+)
57338095 .. 57340133
2039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG374300.1

Sequence Viewer

Length: 1146 bp
ATGGTAGACAACACTGCTTCAAGGAACCATATTCATTCCAACCCAGCTTTTGATGCCTCAATTATGGATGGAGGCTCTAAGTTCTTTGATGATGATGGCCGTCCCAAAAGGACTGGAAATGTTATGACTGCAATTGCTCACATAATTACTGCTGTGATTGGTTCTGGGGTTCTGTCATTGGCTTGGGCCATTGCTCAGCTTGGCTGGGTTGTTGGTCTTGTTGTGATGGTCATGTTTTCCTTGGTGACCTACTACACTTCATGTCTTCTCGTTGCCTGCTATCGTGACCCGGTCACTGGAAAAAGAAACTCTACTTACTCGGCTGCTGTTCGAAACCACCTTGAAAGTGGAACAATGAAGGGAACTCTTACTGGAGTACGCATTGGAATTCATGTGACTCAAACCGAAAAGATATGGAGGATCTTCCAGGCACTTGGTGACATAGCTTTTGCTTACTCATTTGCTATAGTCCTCATTGAAATTGAGGACACGGTTAAATCTCCACCATCAGAAGCCAAGACAATGAAGAGGGCCAGTAAAATTAGTTTAGCAGTCACATCCGTTTTCTACATTTTGTGTGGTTGCTTCGGTTATGCTGGTTTCGGAGATTTAGCCCCCGGAAACCTCCTCACCGGTAAAGGCTTCGGAGATTTAGCCCCATATTGGGTCATTGACTTGGCCAATGCTGCTATAGTTGTCCATCTTGTTGGAGCATACCAAGTCTTCAGCCAGCCCATTTACGCATTCGTTGAGAAAAAAGCAGCACAGCTTTTCTCAGATAGCCACTTCATCACAAAAGAAATCCAAATCCCCATCCCTTGTTTCAAGCCTTACAAGCTTAACCTTTTTAGACTGGTCTGGAGGACACTTTATGTGACTGCAACCACTGTGTTATCGATGGTTTTCCCGTTCTTCAACGGCGTGGTTGGATTTCTTGGGGCTTTGGGGTACTGGCCAATGACAATTTACTTCCCTGTGGAGATGTACATTGCTCAAAAGAAGATACCAAAGTGGAGCACAAGATGGCTTTGCCTCCAAACTCTAAGTCTTTCTGTGCTAATTATAGCTTTACTAGCAGCTGTTGGCTCGATTGCTGGTGTGATTGAAAGTCTCAAAGATTACAAGCCATTCAAGACCAGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

381

Amino Acids

41.8

Weight (kDa)

9.22

Isoelectric Point (pI)

29.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 38 - 112 5.4e-22 Transmembrane amino acid transporter protein
Aa_trans PF01490 124 - 368 5.3e-62 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 6
AclWI GGATC 1 cut(s) 428
AcoI YGGCCR 3 cut(s) 97, 678, 953
AcsI RAATTY 1 cut(s) 387
AcuI CTGAAG 1 cut(s) 709
AdeI CACNNNGTG 1 cut(s) 437
AfaI GTAC 3 cut(s) 378, 950, 986
AfiI CCNNNNNNNGG 3 cut(s) 296, 663, 664
AgeI ACCGGT 1 cut(s) 632
AgsI TTSAA 7 cut(s) 21, 344, 479, 826, 916, 1106, 1132
AjnI CCWGG 1 cut(s) 426
AluBI AGCT 8 cut(s) 47, 199, 446, 769, 838, 1067, 1079, 1140
AluI AGCT 8 cut(s) 47, 199, 446, 769, 838, 1067, 1079, 1140
Alw21I GWGCWC 1 cut(s) 1019
Alw26I GTCTC 1 cut(s) 1115
AlwI GGATC 1 cut(s) 428
AoxI GGCC 5 cut(s) 97, 186, 531, 678, 953
ApeKI GCWGC 4 cut(s) 323, 686, 761, 1076
ApoI RAATTY 1 cut(s) 387
ArsI GACNNNNNNTTYG 4 cut(s) 431, 463, 1030, 1062
AsiGI ACCGGT 1 cut(s) 632
AspS9I GGNCC 2 cut(s) 186, 531
AsuC2I CCSGG 2 cut(s) 290, 618
AsuHPI GGTGA 3 cut(s) 256, 449, 622
AsuII TTCGAA 1 cut(s) 331
BaeI ACNNNNGTAYC 2 cut(s) 995, 1028
BalI TGGCCA 2 cut(s) 680, 955
BbsI GAAGAC 2 cut(s) 257, 715
Bbv12I GWGCWC 1 cut(s) 1019
BbvI GCAGC 4 cut(s) 310, 673, 773, 1088
BccI CCATC 8 cut(s) 62, 89, 220, 514, 708, 821, 892, 1017
BceAI ACGGC 2 cut(s) 84, 934
BciT130I CCWGG 1 cut(s) 428
BcnI CCSGG 2 cut(s) 290, 618
BcoDI GTCTC 1 cut(s) 1115
BfaI CTAG 1 cut(s) 1073
BfmI CTRYAG 2 cut(s) 465, 690
BisI GCNGC 4 cut(s) 324, 687, 762, 1077
BlpI GCTNAGC 1 cut(s) 195
BlsI GCNGC 4 cut(s) 325, 688, 763, 1078
Bme1390I CCNGG 3 cut(s) 290, 428, 618
BmgT120I GGNCC 2 cut(s) 186, 531
BmiI GGNNCC 1 cut(s) 26
BmrFI CCNGG 3 cut(s) 290, 428, 618
BmsI GCATC 1 cut(s) 43
BpiI GAAGAC 2 cut(s) 257, 715
BpmI CTGGAG 2 cut(s) 393, 880
Bpu1102I GCTNAGC 1 cut(s) 195
Bpu14I TTCGAA 1 cut(s) 331
BpuMI CCSGG 2 cut(s) 290, 618
Bsa29I ATCGAT 1 cut(s) 896
BsaJI CCNNGG 2 cut(s) 240, 616
BsaWI WCCGGW 1 cut(s) 632
Bsc4I CCNNNNNNNGG 3 cut(s) 296, 663, 664
Bse118I RCCGGY 1 cut(s) 632
Bse1I ACTGG 6 cut(s) 118, 301, 376, 534, 858, 956
Bse3DI GCAATG 2 cut(s) 189, 987
BseBI CCWGG 1 cut(s) 428
BseCI ATCGAT 1 cut(s) 896
BseDI CCNNGG 2 cut(s) 240, 616
BseGI GGATG 3 cut(s) 73, 557, 813
BseLI CCNNNNNNNGG 3 cut(s) 296, 663, 664
BseMI GCAATG 2 cut(s) 189, 987
BseMII CTCAG 2 cut(s) 209, 789
BseNI ACTGG 6 cut(s) 118, 301, 376, 534, 858, 956
BseRI GAGGAG 1 cut(s) 617
BseXI GCAGC 4 cut(s) 310, 673, 773, 1088
BseYI CCCAGC 2 cut(s) 43, 204
BshFI GGCC 5 cut(s) 99, 188, 533, 680, 955
BshTI ACCGGT 1 cut(s) 632
BshVI ATCGAT 1 cut(s) 896
BsiHKAI GWGCWC 1 cut(s) 1019
BsiSI CCGG 3 cut(s) 290, 618, 633
BslFI GGGAC 1 cut(s) 87
BslI CCNNNNNNNGG 3 cut(s) 296, 663, 664
BsmAI GTCTC 1 cut(s) 1115
BsmFI GGGAC 1 cut(s) 87
BsmI GAATGC 1 cut(s) 743
BsnI GGCC 5 cut(s) 99, 188, 533, 680, 955
Bsp119I TTCGAA 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 1019
Bsp1407I TGTACA 1 cut(s) 984
Bsp143I GATC 1 cut(s) 420
Bsp1720I GCTNAGC 1 cut(s) 195
BspANI GGCC 5 cut(s) 99, 188, 533, 680, 955
BspCNI CTCAG 2 cut(s) 208, 788
BspDI ATCGAT 1 cut(s) 896
BspLI GGNNCC 1 cut(s) 26
BspPI GGATC 1 cut(s) 428
BspT104I TTCGAA 1 cut(s) 331
BsrDI GCAATG 2 cut(s) 189, 987
BsrFI RCCGGY 1 cut(s) 632
BsrGI TGTACA 1 cut(s) 984
BsrI ACTGG 6 cut(s) 118, 301, 376, 534, 858, 956
BssAI RCCGGY 1 cut(s) 632
BssECI CCNNGG 2 cut(s) 240, 616
BssMI GATC 1 cut(s) 420
BssT1I CCWWGG 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 2 cut(s) 493, 889
Bst6I CTCTTC 1 cut(s) 521
BstAUI TGTACA 1 cut(s) 984
BstBI TTCGAA 1 cut(s) 331
BstC8I GCNNGC 2 cut(s) 277, 731
BstDEI CTNAG 4 cut(s) 78, 195, 775, 1043
BstEII GGTNACC 1 cut(s) 244
BstF5I GGATG 3 cut(s) 73, 557, 813
BstKTI GATC 1 cut(s) 423
BstMAI GTCTC 1 cut(s) 1115
BstMBI GATC 1 cut(s) 420
BstMWI GCNNNNNNNGC 4 cut(s) 53, 686, 835, 1073
BstNI CCWGG 1 cut(s) 428
BstPI GGTNACC 1 cut(s) 244
BstSCI CCNGG 3 cut(s) 288, 426, 616
BstSFI CTRYAG 2 cut(s) 465, 690
BstV1I GCAGC 4 cut(s) 310, 673, 773, 1088
BstV2I GAAGAC 2 cut(s) 257, 715
BstX2I RGATCY 1 cut(s) 420
BstXI CCANNNNNNTGG 2 cut(s) 434, 707
BstYI RGATCY 1 cut(s) 420
Bsu15I ATCGAT 1 cut(s) 896
BsuRI GGCC 5 cut(s) 99, 188, 533, 680, 955
BsuTUI ATCGAT 1 cut(s) 896
BtsCI GGATG 3 cut(s) 73, 557, 813
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 12, 294, 885
Cac8I GCNNGC 2 cut(s) 277, 731
Cfr10I RCCGGY 1 cut(s) 632
Cfr13I GGNCC 2 cut(s) 186, 531
ClaI ATCGAT 1 cut(s) 896
Csp6I GTAC 3 cut(s) 377, 949, 985
CspAI ACCGGT 1 cut(s) 632
CviAII CATG 3 cut(s) 232, 261, 392
CviQI GTAC 3 cut(s) 377, 949, 985
DdeI CTNAG 4 cut(s) 78, 195, 775, 1043
DpnI GATC 1 cut(s) 422
DpnII GATC 1 cut(s) 420
DraIII CACNNNGTG 1 cut(s) 437
EaeI YGGCCR 3 cut(s) 97, 678, 953
Eam1104I CTCTTC 1 cut(s) 521
EarI CTCTTC 1 cut(s) 521
Eco130I CCWWGG 1 cut(s) 240
Eco57I CTGAAG 1 cut(s) 709
Eco91I GGTNACC 1 cut(s) 244
EcoO65I GGTNACC 1 cut(s) 244
EcoRI GAATTC 1 cut(s) 387
EcoRII CCWGG 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 3 cut(s) 235, 264, 395
FaqI GGGAC 1 cut(s) 87
FatI CATG 3 cut(s) 231, 260, 391
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 4 cut(s) 324, 687, 762, 1077
FokI GGATG 3 cut(s) 80, 544, 800
Fsp4HI GCNGC 4 cut(s) 324, 687, 762, 1077
FspBI CTAG 1 cut(s) 1073
GluI GCNGC 4 cut(s) 324, 687, 762, 1077
GsaI CCCAGC 2 cut(s) 47, 208
GsuI CTGGAG 2 cut(s) 393, 880
HaeIII GGCC 5 cut(s) 99, 188, 533, 680, 955
HapII CCGG 3 cut(s) 290, 618, 633
Hin1II CATG 3 cut(s) 235, 264, 395
HindIII AAGCTT 1 cut(s) 836
HinfI GANTC 1 cut(s) 397
HpaII CCGG 3 cut(s) 290, 618, 633
HphI GGTGA 3 cut(s) 256, 449, 622
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 4 cut(s) 511, 605, 647, 778
Hpy188III TCNNGA 4 cut(s) 284, 859, 1132, 1143
Hpy8I GTNNAC 1 cut(s) 7
HpyAV CCTTC 1 cut(s) 352
HpyCH4III ACNGT 2 cut(s) 493, 889
HpyCH4V TGCA 2 cut(s) 131, 881
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 686, 835, 1073
HpyF3I CTNAG 4 cut(s) 78, 195, 775, 1043
Hsp92II CATG 3 cut(s) 235, 264, 395
Kzo9I GATC 1 cut(s) 420
LmnI GCTCC 2 cut(s) 710, 1014
Lsp1109I GCAGC 4 cut(s) 310, 673, 773, 1088
LweI GCATC 1 cut(s) 43
MaeI CTAG 1 cut(s) 1073
MaeIII GTNAC 7 cut(s) 244, 284, 292, 394, 437, 553, 874
MalI GATC 1 cut(s) 422
MboI GATC 1 cut(s) 420
MboII GAAGA 6 cut(s) 257, 415, 538, 715, 904, 1012
MfeI CAATTG 1 cut(s) 132
MflI RGATCY 1 cut(s) 420
MhlI GDGCHC 1 cut(s) 1019
MlsI TGGCCA 2 cut(s) 680, 955
MluCI AATT 8 cut(s) 60, 132, 144, 387, 480, 540, 963, 1059
MluNI TGGCCA 2 cut(s) 680, 955
MlyI GAGTC 1 cut(s) 391
MmeI TCCRAC 3 cut(s) 63, 688, 907
Mox20I TGGCCA 2 cut(s) 680, 955
MscI TGGCCA 2 cut(s) 680, 955
MseI TTAA 2 cut(s) 495, 840
Msp20I TGGCCA 2 cut(s) 680, 955
MspA1I CMGCKG 1 cut(s) 1079
MspI CCGG 3 cut(s) 290, 618, 633
MspR9I CCNGG 3 cut(s) 290, 428, 618
MunI CAATTG 1 cut(s) 132
Mva1269I GAATGC 1 cut(s) 743
MvaI CCWGG 1 cut(s) 428
MwoI GCNNNNNNNGC 4 cut(s) 53, 686, 835, 1073
NciI CCSGG 2 cut(s) 290, 618
NdeII GATC 1 cut(s) 420
NlaIII CATG 3 cut(s) 235, 264, 395
NlaIV GGNNCC 1 cut(s) 26
NmeAIII GCCGAG 1 cut(s) 299
NmuCI GTSAC 7 cut(s) 244, 284, 292, 394, 437, 553, 874
NspV TTCGAA 1 cut(s) 331
PctI GAATGC 1 cut(s) 743
PflFI GACNNNGTC 1 cut(s) 290
PinAI ACCGGT 1 cut(s) 632
PkrI GCNGC 4 cut(s) 325, 688, 763, 1078
PleI GAGTC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 391
Psp6I CCWGG 1 cut(s) 426
PspEI GGTNACC 1 cut(s) 244
PspFI CCCAGC 2 cut(s) 43, 204
PspGI CCWGG 1 cut(s) 426
PspN4I GGNNCC 1 cut(s) 26
PspPI GGNCC 2 cut(s) 186, 531
PsuI RGATCY 1 cut(s) 420
PsyI GACNNNGTC 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 1079
RsaI GTAC 3 cut(s) 378, 950, 986
RsaNI GTAC 3 cut(s) 377, 949, 985
SaqAI TTAA 2 cut(s) 495, 840
SatI GCNGC 4 cut(s) 324, 687, 762, 1077
Sau3AI GATC 1 cut(s) 420
Sau96I GGNCC 2 cut(s) 186, 531
SchI GAGTC 1 cut(s) 391
ScrFI CCNGG 3 cut(s) 290, 428, 618
SduI GDGCHC 1 cut(s) 1019
SfaNI GCATC 1 cut(s) 43
SfcI CTRYAG 2 cut(s) 465, 690
SfuI TTCGAA 1 cut(s) 331
Sse9I AATT 8 cut(s) 60, 132, 144, 387, 480, 540, 963, 1059
SspMI CTAG 1 cut(s) 1073
StyD4I CCNGG 3 cut(s) 288, 426, 616
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 2 cut(s) 493, 889
TaqI TCGA 3 cut(s) 331, 896, 1088
TasI AATT 8 cut(s) 60, 132, 144, 387, 480, 540, 963, 1059
TatI WGTACW 1 cut(s) 984
Tru1I TTAA 2 cut(s) 495, 840
Tru9I TTAA 2 cut(s) 495, 840
TscAI CASTG 3 cut(s) 19, 301, 892
TseFI GTSAC 7 cut(s) 244, 284, 292, 394, 437, 553, 874
TseI GCWGC 4 cut(s) 323, 686, 761, 1076
Tsp45I GTSAC 7 cut(s) 244, 284, 292, 394, 437, 553, 874
TspDTI ATGAA 6 cut(s) 23, 249, 371, 380, 539, 778
TspGWI ACGGA 1 cut(s) 550
TspRI CASTG 3 cut(s) 19, 301, 892
Tth111I GACNNNGTC 1 cut(s) 290
XapI RAATTY 1 cut(s) 387
XcmI CCANNNNNNNNNTGG 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 6
XspI CTAG 1 cut(s) 1073
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.