Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004318.1

Orthogroup ID

OG0001778

Physical Location & Seq

Genomic Coordinates Reverse (-)

26091 .. 28117

Gene Structure 2027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004318.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

atggtagacaacactgcttcaaggaaccatattcattccaacccagcttttgatgcctcagttatggatggaggctctaagttctttgatgatgatggccgtcccaaaaggactggaaatgttatgacagcaattgctcacataattactgctgtgattggttctggggttttgtcattggcttgggccattgctcagcttggctgggttgttggtcctgttgtgatggtcatgttttccttagtgacctactacacttcatgtcttctcgttgcctgctatcgtgacccggtcactggaaaaagaaactctacttactcggctgctgttcgaaaccaccttggtggacttcagtacaaagttcttggaatagttcagcgcgtgaaccttttcggaatcaccattggctacaccataacagcatgtataagcatggttgcaatacaaaggaattcctgcttgcacaagagtcgtggagaaaaaccatgcccggtaaacagcaatccctatatgattgcttttggcatcacagaaattatattatctcaaattccaaatttcgataagttgtggtggctatctactgttgctgcagtcatgtcatttacatactcagggattggacttgcccttggaattactaaagttgtagaaagtggaacaatgaagggaactcttactggagtgcgcattggaattcatgtgactcaaaccgaaaagatatggaggatcttccagtcacttggtgacatagcttttgcttactcatttgctatagtcctcattgaaattgaggacacggttaaatctccaccatcagaagccaagacaatgaagagggccagtaaaattagtttagcagtcacatccgttttctacattttgtgtggttgcttcggttatgctggtttcggagatttagcccccggaaacctcctcaccggtaaaggcttcggagatttagacccatattgggtcattgacttggccaatgctgctatagttgtccatcttgttggagcataccaagtcttcagccagcccatttacgcattcgttgagaaaaaagcagcacagcttttcccagatagccacttcatcacaaaagaaatccaaatctccatcccttgtttcaagccttacaagcttaacctttttagactggtctggaggacactttatgtgactgcaaccactgtgttatcgatggttttcccgttcttcaacggcgtggttggatttcttggggctttggggtactggccaatgacaatttacttccctgtggagatgtacattgctcaaaagaagataccaaagtggagcacaagatggctttgcctccaaactctaagtctttctgtgctaattatagctttactagcagctgttggctcgattgccggtgtgattgaaagtctcaaagattacaagccattcaagaccagctcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

484

Amino Acids

53.02

Weight (kDa)

9.26

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10010 AT1G10010 AT1G58360
fragaria_vesca	FvH4_2g27660 FvH4_2g27660 FvH4_2g27660 FvH4_2g27660 FvH4_2g27661 FvH4_2g27661 FvH4_5g12780
malus_domestica	MD00G1140000.v1.1 MD08G1158200.v1.1 MD15G1343500.v1.1 MD15G1343600.v1.1 MD15G1343900.v1.1
prunus_persica	Prupe.1G491000_v2.0.a1 Prupe.1G491000_v2.0.a1 Prupe.1G491000_v2.0.a1 Prupe.1G491100_v2.0.a1 Prupe.1G491200_v2.0.a1 Prupe.1G491300_v2.0.a1
pyrus_communis	pycom08g05160 pycom12419g00300 pycom15g30720
rosa_chinensis	RchiOBHm_Chr6g0296481 RchiOBHm_Chr6g0296511
rosa_laevigata	RLG00000011686 RLG00000011687 RLG00000011688
rosa_multiflora	Rmu_sc0001146.1_g000005 Rmu_sc0004318.1_g000010 Rmu_sc0006174.1_g000011
rosa_roxburghii	Rroxscaffold_7G00171480 Rroxscaffold_7G00171490 Rroxscaffold_7G00178640 Rroxscaffold_7G00178650
rosa_rugosa	Rorug06G0262800
rosa_samantha	Rh6AG374100 Rh6AG374300 Rh6BG382700 Rh6BG382800 Rh6CG387500 Rh6CG387800 Rh6DG375300 Rh6DG375500
rosa_wichuraiana	Rw6G032630 Rw6G032640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	689
AccI	GTMKAC	1 cut(s)	6
AccII	CGCG	1 cut(s)	381
AclWI	GGATC	1 cut(s)	737
AcoI	YGGCCR	3 cut(s)	97, 987, 1262
AcsI	RAATTY	4 cut(s)	451, 549, 556, 696
AcuI	CTGAAG	2 cut(s)	335, 1018
AdeI	CACNNNGTG	1 cut(s)	746
AfaI	GTAC	3 cut(s)	356, 1259, 1295
AfiI	CCNNNNNNNGG	2 cut(s)	296, 973
AgeI	ACCGGT	1 cut(s)	941
AgsI	TTSAA	6 cut(s)	21, 788, 1135, 1225, 1415, 1441
AleI	CACNNNNGTG	1 cut(s)	342
AluBI	AGCT	8 cut(s)	47, 199, 755, 1078, 1147, 1376, 1388, 1449
AluI	AGCT	8 cut(s)	47, 199, 755, 1078, 1147, 1376, 1388, 1449
Alw21I	GWGCWC	1 cut(s)	1328
Alw26I	GTCTC	1 cut(s)	1424
AlwI	GGATC	1 cut(s)	737
AoxI	GGCC	5 cut(s)	97, 186, 840, 987, 1262
ApeKI	GCWGC	5 cut(s)	323, 590, 995, 1070, 1385
ApoI	RAATTY	4 cut(s)	451, 549, 556, 696
ArsI	GACNNNNNNTTYG	4 cut(s)	740, 772, 1339, 1371
AsiGI	ACCGGT	1 cut(s)	941
Asp700I	GAANNNNTTC	1 cut(s)	389
AspLEI	GCGC	2 cut(s)	381, 690
AspS9I	GGNCC	3 cut(s)	186, 215, 840
AsuC2I	CCSGG	3 cut(s)	290, 491, 927
AsuHPI	GGTGA	3 cut(s)	391, 758, 931
AsuII	TTCGAA	1 cut(s)	331
AvaII	GGWCC	1 cut(s)	215
BaeI	ACNNNNGTAYC	2 cut(s)	1304, 1337
BalI	TGGCCA	2 cut(s)	989, 1264
BbsI	GAAGAC	2 cut(s)	257, 1024
Bbv12I	GWGCWC	1 cut(s)	1328
BbvI	GCAGC	5 cut(s)	310, 577, 982, 1082, 1397
BccI	CCATC	8 cut(s)	62, 89, 220, 823, 1017, 1130, 1201, 1326
BceAI	ACGGC	2 cut(s)	84, 1243
BcgI	CGANNNNNNTGC	2 cut(s)	452, 486
BcnI	CCSGG	3 cut(s)	290, 491, 927
BcoDI	GTCTC	1 cut(s)	1424
BfaI	CTAG	1 cut(s)	1382
BfmI	CTRYAG	3 cut(s)	591, 774, 999
BisI	GCNGC	5 cut(s)	324, 591, 996, 1071, 1386
BlpI	GCTNAGC	1 cut(s)	195
BlsI	GCNGC	5 cut(s)	325, 592, 997, 1072, 1387
Bme1390I	CCNGG	3 cut(s)	290, 491, 927
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	3 cut(s)	186, 215, 840
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	3 cut(s)	290, 491, 927
BmsI	GCATC	2 cut(s)	43, 534
BpiI	GAAGAC	2 cut(s)	257, 1024
BpmI	CTGGAG	2 cut(s)	702, 1189
Bpu1102I	GCTNAGC	1 cut(s)	195
Bpu14I	TTCGAA	1 cut(s)	331
BpuMI	CCSGG	3 cut(s)	290, 491, 927
Bsa29I	ATCGAT	1 cut(s)	1205
BsaJI	CCNNGG	3 cut(s)	340, 631, 925
BsaWI	WCCGGW	1 cut(s)	941
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 973
Bse118I	RCCGGY	2 cut(s)	941, 1403
Bse1I	ACTGG	7 cut(s)	118, 301, 685, 736, 843, 1167, 1265
Bse3DI	GCAATG	2 cut(s)	189, 1296
BseCI	ATCGAT	1 cut(s)	1205
BseDI	CCNNGG	3 cut(s)	340, 631, 925
BseGI	GGATG	3 cut(s)	73, 866, 1122
BseLI	CCNNNNNNNGG	2 cut(s)	296, 973
BseMI	GCAATG	2 cut(s)	189, 1296
BseMII	CTCAG	3 cut(s)	72, 209, 627
BseNI	ACTGG	7 cut(s)	118, 301, 685, 736, 843, 1167, 1265
BseRI	GAGGAG	1 cut(s)	926
BseXI	GCAGC	5 cut(s)	310, 577, 982, 1082, 1397
BseYI	CCCAGC	2 cut(s)	43, 204
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	5 cut(s)	99, 188, 842, 989, 1264
BshTI	ACCGGT	1 cut(s)	941
BshVI	ATCGAT	1 cut(s)	1205
BsiHKAI	GWGCWC	1 cut(s)	1328
BsiSI	CCGG	5 cut(s)	290, 491, 927, 942, 1404
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	2 cut(s)	296, 973
BsmAI	GTCTC	1 cut(s)	1424
BsmFI	GGGAC	1 cut(s)	87
BsmI	GAATGC	1 cut(s)	1052
BsnI	GGCC	5 cut(s)	99, 188, 842, 989, 1264
Bsp119I	TTCGAA	1 cut(s)	331
Bsp1286I	GDGCHC	1 cut(s)	1328
Bsp1407I	TGTACA	1 cut(s)	1293
Bsp143I	GATC	1 cut(s)	729
Bsp1720I	GCTNAGC	1 cut(s)	195
BspANI	GGCC	5 cut(s)	99, 188, 842, 989, 1264
BspCNI	CTCAG	3 cut(s)	71, 208, 626
BspDI	ATCGAT	1 cut(s)	1205
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	1 cut(s)	26
BspMAI	CTGCAG	1 cut(s)	595
BspPI	GGATC	1 cut(s)	737
BspT104I	TTCGAA	1 cut(s)	331
BsrDI	GCAATG	2 cut(s)	189, 1296
BsrFI	RCCGGY	2 cut(s)	941, 1403
BsrGI	TGTACA	1 cut(s)	1293
BsrI	ACTGG	7 cut(s)	118, 301, 685, 736, 843, 1167, 1265
BssAI	RCCGGY	2 cut(s)	941, 1403
BssECI	CCNNGG	3 cut(s)	340, 631, 925
BssMI	GATC	1 cut(s)	729
BssT1I	CCWWGG	2 cut(s)	340, 631
Bst4CI	ACNGT	3 cut(s)	586, 802, 1198
Bst6I	CTCTTC	1 cut(s)	830
BstAUI	TGTACA	1 cut(s)	1293
BstBI	TTCGAA	1 cut(s)	331
BstC8I	GCNNGC	3 cut(s)	277, 461, 1040
BstDEI	CTNAG	6 cut(s)	58, 78, 195, 241, 613, 1352
BstF5I	GGATG	3 cut(s)	73, 866, 1122
BstFNI	CGCG	1 cut(s)	381
BstHHI	GCGC	2 cut(s)	381, 690
BstKTI	GATC	1 cut(s)	732
BstMAI	GTCTC	1 cut(s)	1424
BstMBI	GATC	1 cut(s)	729
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 995, 1144, 1382
BstNSI	RCATGY	1 cut(s)	426
BstSCI	CCNGG	3 cut(s)	288, 489, 925
BstSFI	CTRYAG	3 cut(s)	591, 774, 999
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	5 cut(s)	310, 577, 982, 1082, 1397
BstV2I	GAAGAC	2 cut(s)	257, 1024
BstX2I	RGATCY	1 cut(s)	729
BstXI	CCANNNNNNTGG	3 cut(s)	344, 743, 1016
BstYI	RGATCY	1 cut(s)	729
Bsu15I	ATCGAT	1 cut(s)	1205
BsuRI	GGCC	5 cut(s)	99, 188, 842, 989, 1264
BsuTUI	ATCGAT	1 cut(s)	1205
BtsCI	GGATG	3 cut(s)	73, 866, 1122
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	3 cut(s)	12, 294, 1194
Cac8I	GCNNGC	3 cut(s)	277, 461, 1040
CfoI	GCGC	2 cut(s)	381, 690
Cfr10I	RCCGGY	2 cut(s)	941, 1403
Cfr13I	GGNCC	3 cut(s)	186, 215, 840
ClaI	ATCGAT	1 cut(s)	1205
Csp6I	GTAC	3 cut(s)	355, 1258, 1294
CspAI	ACCGGT	1 cut(s)	941
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviAII	CATG	7 cut(s)	232, 261, 423, 433, 486, 598, 701
CviQI	GTAC	3 cut(s)	355, 1258, 1294
DdeI	CTNAG	6 cut(s)	58, 78, 195, 241, 613, 1352
DpnI	GATC	1 cut(s)	731
DpnII	GATC	1 cut(s)	729
DraIII	CACNNNGTG	1 cut(s)	746
EaeI	YGGCCR	3 cut(s)	97, 987, 1262
Eam1104I	CTCTTC	1 cut(s)	830
EarI	CTCTTC	1 cut(s)	830
Eco130I	CCWWGG	2 cut(s)	340, 631
Eco47I	GGWCC	1 cut(s)	215
Eco57I	CTGAAG	2 cut(s)	335, 1018
EcoRI	GAATTC	2 cut(s)	451, 696
EcoT14I	CCWWGG	2 cut(s)	340, 631
ErhI	CCWWGG	2 cut(s)	340, 631
FaeI	CATG	7 cut(s)	235, 264, 426, 436, 489, 601, 704
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	7 cut(s)	231, 260, 422, 432, 485, 597, 700
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	5 cut(s)	324, 591, 996, 1071, 1386
FokI	GGATG	3 cut(s)	80, 853, 1109
Fsp4HI	GCNGC	5 cut(s)	324, 591, 996, 1071, 1386
FspAI	RTGCGCAY	1 cut(s)	689
FspBI	CTAG	1 cut(s)	1382
FspI	TGCGCA	1 cut(s)	689
GlaI	GCGC	2 cut(s)	380, 689
GluI	GCNGC	5 cut(s)	324, 591, 996, 1071, 1386
GsaI	CCCAGC	2 cut(s)	47, 208
GsuI	CTGGAG	2 cut(s)	702, 1189
HaeIII	GGCC	5 cut(s)	99, 188, 842, 989, 1264
HapII	CCGG	5 cut(s)	290, 491, 927, 942, 1404
HhaI	GCGC	2 cut(s)	381, 690
Hin1II	CATG	7 cut(s)	235, 264, 426, 436, 489, 601, 704
Hin6I	GCGC	2 cut(s)	379, 688
HinP1I	GCGC	2 cut(s)	379, 688
HindIII	AAGCTT	1 cut(s)	1145
HinfI	GANTC	3 cut(s)	396, 469, 706
HpaII	CCGG	5 cut(s)	290, 491, 927, 942, 1404
HphI	GGTGA	3 cut(s)	391, 758, 931
Hpy166II	GTNNAC	4 cut(s)	7, 347, 385, 496
Hpy188I	TCNGA	4 cut(s)	395, 820, 914, 956
Hpy188III	TCNNGA	4 cut(s)	284, 1168, 1441, 1452
Hpy8I	GTNNAC	4 cut(s)	7, 347, 385, 496
HpyAV	CCTTC	1 cut(s)	661
HpyCH4III	ACNGT	3 cut(s)	586, 802, 1198
HpyCH4V	TGCA	4 cut(s)	440, 463, 593, 1190
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 995, 1144, 1382
HpyF3I	CTNAG	6 cut(s)	58, 78, 195, 241, 613, 1352
Hsp92II	CATG	7 cut(s)	235, 264, 426, 436, 489, 601, 704
HspAI	GCGC	2 cut(s)	379, 688
Kzo9I	GATC	1 cut(s)	729
LmnI	GCTCC	2 cut(s)	1019, 1323
Lsp1109I	GCAGC	5 cut(s)	310, 577, 982, 1082, 1397
LweI	GCATC	2 cut(s)	43, 534
MaeI	CTAG	1 cut(s)	1382
MaeIII	GTNAC	8 cut(s)	244, 284, 292, 703, 738, 746, 862, 1183
MalI	GATC	1 cut(s)	731
MboI	GATC	1 cut(s)	729
MboII	GAAGA	6 cut(s)	257, 724, 847, 1024, 1213, 1321
MfeI	CAATTG	1 cut(s)	132
MflI	RGATCY	1 cut(s)	729
MhlI	GDGCHC	1 cut(s)	1328
MlsI	TGGCCA	2 cut(s)	989, 1264
MluNI	TGGCCA	2 cut(s)	989, 1264
MlyI	GAGTC	2 cut(s)	478, 700
MmeI	TCCRAC	3 cut(s)	63, 997, 1216
Mox20I	TGGCCA	2 cut(s)	989, 1264
MroXI	GAANNNNTTC	1 cut(s)	389
MscI	TGGCCA	2 cut(s)	989, 1264
MseI	TTAA	2 cut(s)	804, 1149
MslI	CAYNNNNRTG	1 cut(s)	342
Msp20I	TGGCCA	2 cut(s)	989, 1264
MspA1I	CMGCKG	1 cut(s)	1388
MspI	CCGG	5 cut(s)	290, 491, 927, 942, 1404
MspR9I	CCNGG	3 cut(s)	290, 491, 927
MunI	CAATTG	1 cut(s)	132
Mva1269I	GAATGC	1 cut(s)	1052
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	4 cut(s)	53, 995, 1144, 1382
NciI	CCSGG	3 cut(s)	290, 491, 927
NdeII	GATC	1 cut(s)	729
NlaIII	CATG	7 cut(s)	235, 264, 426, 436, 489, 601, 704
NlaIV	GGNNCC	1 cut(s)	26
NmeAIII	GCCGAG	1 cut(s)	299
NmuCI	GTSAC	8 cut(s)	244, 284, 292, 703, 738, 746, 862, 1183
NsbI	TGCGCA	1 cut(s)	689
NspI	RCATGY	1 cut(s)	426
NspV	TTCGAA	1 cut(s)	331
OliI	CACNNNNGTG	1 cut(s)	342
PctI	GAATGC	1 cut(s)	1052
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	396
PflFI	GACNNNGTC	1 cut(s)	290
PinAI	ACCGGT	1 cut(s)	941
PkrI	GCNGC	5 cut(s)	325, 592, 997, 1072, 1387
PleI	GAGTC	2 cut(s)	477, 700
PpsI	GAGTC	2 cut(s)	477, 700
PspFI	CCCAGC	2 cut(s)	43, 204
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	3 cut(s)	186, 215, 840
PstI	CTGCAG	1 cut(s)	595
PsuI	RGATCY	1 cut(s)	729
PsyI	GACNNNGTC	1 cut(s)	290
PvuII	CAGCTG	1 cut(s)	1388
RsaI	GTAC	3 cut(s)	356, 1259, 1295
RsaNI	GTAC	3 cut(s)	355, 1258, 1294
RseI	CAYNNNNRTG	1 cut(s)	342
SaqAI	TTAA	2 cut(s)	804, 1149
SatI	GCNGC	5 cut(s)	324, 591, 996, 1071, 1386
Sau3AI	GATC	1 cut(s)	729
Sau96I	GGNCC	3 cut(s)	186, 215, 840
SchI	GAGTC	2 cut(s)	478, 700
ScrFI	CCNGG	3 cut(s)	290, 491, 927
SduI	GDGCHC	1 cut(s)	1328
SfaNI	GCATC	2 cut(s)	43, 534
SfcI	CTRYAG	3 cut(s)	591, 774, 999
SfuI	TTCGAA	1 cut(s)	331
SinI	GGWCC	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	342
SspMI	CTAG	1 cut(s)	1382
StyD4I	CCNGG	3 cut(s)	288, 489, 925
StyI	CCWWGG	2 cut(s)	340, 631
TaaI	ACNGT	3 cut(s)	586, 802, 1198
TaqI	TCGA	4 cut(s)	331, 561, 1205, 1397
TatI	WGTACW	2 cut(s)	354, 1293
TfiI	GAWTC	1 cut(s)	396
Tru1I	TTAA	2 cut(s)	804, 1149
Tru9I	TTAA	2 cut(s)	804, 1149
TscAI	CASTG	3 cut(s)	19, 301, 1201
TseFI	GTSAC	8 cut(s)	244, 284, 292, 703, 738, 746, 862, 1183
TseI	GCWGC	5 cut(s)	323, 590, 995, 1070, 1385
Tsp45I	GTSAC	8 cut(s)	244, 284, 292, 703, 738, 746, 862, 1183
TspDTI	ATGAA	6 cut(s)	23, 249, 680, 689, 848, 1087
TspGWI	ACGGA	1 cut(s)	859
TspRI	CASTG	3 cut(s)	19, 301, 1201
Tth111I	GACNNNGTC	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	215
XapI	RAATTY	4 cut(s)	451, 549, 556, 696
XceI	RCATGY	1 cut(s)	426
XmiI	GTMKAC	1 cut(s)	6
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	1 cut(s)	1382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.