Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001778

Physical Location & Seq

Genomic Coordinates Reverse (-)

40845129 .. 40848457

Gene Structure 3329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G491000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGACAAAGATGGGTGACAATACAAAGAACCAGCAGCTTCATCACCACCAAATTTTTGACGTCTCAGTTGATGTGCCTCCACAAGGAGGCTCCAAGTGCTTTGATGATGATGGTCGTCTCAAACGAACTGGAACTGTTTGGACTTCAAGTGCTCACATCATTACTGCTGTGATTGGTTCTGGTGTTCTTTCCTTGGCTTGGGCCACAGCTCAGCTTGGATGGGTTGCTGGTCCTTCTGTCATGCTCTTGTTCTCCTTTGTCACTTACTACACTTCCACTCTTCTCTCTGCTTGCTATCGTTCCGGCGATTCTGTCACTGGAAAGAGAAACTATACTTACATGGATGCTGTTAGATCGAACCTTGGTGGAGCTAAGGTCAAAATCTGTGGATATGTCCAGTACTTGAACCTTTTTGGAGTTTCCATTGGCTACACAATAGCATCATCTATAAGCATGATGGCAATAAAAAGGTCTAACTGCTTCCACAAGAGTGGTGGGAAGAATCCATGCCATATAAACAGCAACCCCTATATGATTGCTTTTGGCATCACAGAAATTATTTTCTCTCAAATTCCAAACTTTGATCAACTTTGGTGGCTCTCCATTGTTGCTGCAGTCATGTCCTTCACTTATTCAACAATTGGACTTGGCCTTGGAATTGCTCAAGTTGCAGCAAATGGAAACATCATGGGAAGCATGACTGGAATAAGTATTGGCACTGTGACTCCAATGCAAAAGATGTGGAGGAGTTTCCAAGCACTTGGTGACATAGCTTTTGCATACTCTTACTCTCTCATCCTTATTGAAATTCAGGACACAATAAGATCCCCACCATCTGAATCCAAGACAATGAAGAGGGCCACTCAAATTAGTGTGGCAGTCACTACCCTTTTCTACATGCTCTGTGGCTGCATGGGATATGCTGCTTTTGGAGACTTATCCCCTGGAAACCTCCTCACTGGTTTTGGTTTCTATAACCCATACTGGCTCCTGGACATAGCCAATGCTGCTATAGTAGTCCACCTTGTTGGTGCATACCAAGTCTATGCTCAGCCTCTTTTCGCCTTTGTTGAGAAAACCGCAGCACAAAAATTCCCAGATAGCGATTTCATCACGAAAGACATCAGACTCCAAATCCCTGGAATCGGTCCTTACAACCTTAACCTCTTCAGAATGATTTGGAGGACAGCTTTTGTGATCATAACCACTGTGATCTCCATGATCCTCCCCTTCTTCAACGACGTGGTTGGACTTCTCGGGGCTTTTGGGTTTTGGCCACTCACAGTTTACTTCCCCGTGGAGATGTATATTGTTCAAAAGAAGATCCCAAAGTGGAGCACAAGATGGCTTTGCCTCCAAATCCTAAGTGTTGCTTGCCTTATAATAACCATAGCAGCTGCTGCTGGCTCAATTGCTGGGGTGGTCAGTGATCTCAAGGTCTACAAGCCATTCAAGACCAGCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015318 GO:0015711 GO:0015802 GO:0015809 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

489

Amino Acids

53.56

Weight (kDa)

9.16

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10010 AT1G10010 AT1G58360
fragaria_vesca	FvH4_2g27660 FvH4_2g27660 FvH4_2g27660 FvH4_2g27660 FvH4_2g27661 FvH4_2g27661 FvH4_5g12780
malus_domestica	MD00G1140000.v1.1 MD08G1158200.v1.1 MD15G1343500.v1.1 MD15G1343600.v1.1 MD15G1343900.v1.1
prunus_persica	Prupe.1G491000_v2.0.a1 Prupe.1G491000_v2.0.a1 Prupe.1G491000_v2.0.a1 Prupe.1G491100_v2.0.a1 Prupe.1G491200_v2.0.a1 Prupe.1G491300_v2.0.a1
pyrus_communis	pycom08g05160 pycom12419g00300 pycom15g30720
rosa_chinensis	RchiOBHm_Chr6g0296481 RchiOBHm_Chr6g0296511
rosa_laevigata	RLG00000011686 RLG00000011687 RLG00000011688
rosa_multiflora	Rmu_sc0001146.1_g000005 Rmu_sc0004318.1_g000010 Rmu_sc0006174.1_g000011
rosa_roxburghii	Rroxscaffold_7G00171480 Rroxscaffold_7G00171490 Rroxscaffold_7G00178640 Rroxscaffold_7G00178650
rosa_rugosa	Rorug06G0262800
rosa_samantha	Rh6AG374100 Rh6AG374300 Rh6BG382700 Rh6BG382800 Rh6CG387500 Rh6CG387800 Rh6DG375300 Rh6DG375500
rosa_wichuraiana	Rw6G032630 Rw6G032640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1382
AatII	GACGTC	1 cut(s)	63
AccI	GTMKAC	1 cut(s)	1440
AciI	CCGC	1 cut(s)	1080
AclWI	GGATC	3 cut(s)	819, 1216, 1318
AcoI	YGGCCR	1 cut(s)	1274
AcsI	RAATTY	4 cut(s)	51, 570, 807, 1091
AcuI	CTGAAG	1 cut(s)	1153
AcyI	GRCGYC	1 cut(s)	60
AdeI	CACNNNGTG	1 cut(s)	764
AfaI	GTAC	1 cut(s)	401
AfiI	CCNNNNNNNGG	4 cut(s)	83, 86, 198, 1145
AgsI	TTSAA	7 cut(s)	147, 406, 636, 806, 1237, 1316, 1453
AjiI	CACGTC	1 cut(s)	1243
AjnI	CCWGG	3 cut(s)	943, 990, 1138
AleI	CACNNNNGTG	1 cut(s)	489
AluBI	AGCT	8 cut(s)	37, 209, 214, 371, 773, 1190, 1397, 1461
AluI	AGCT	8 cut(s)	37, 209, 214, 371, 773, 1190, 1397, 1461
Alw21I	GWGCWC	2 cut(s)	154, 1340
Alw26I	GTCTC	3 cut(s)	67, 122, 927
AlwI	GGATC	3 cut(s)	819, 1216, 1318
AlwNI	CAGNNNCTG	2 cut(s)	1400, 1464
Ama87I	CYCGRG	1 cut(s)	1256
AoxI	GGCC	4 cut(s)	201, 649, 858, 1274
ApoI	RAATTY	4 cut(s)	51, 570, 807, 1091
ArsI	GACNNNNNNTTYG	2 cut(s)	758, 790
AspS9I	GGNCC	4 cut(s)	201, 230, 858, 1148
AsuHPI	GGTGA	3 cut(s)	26, 35, 776
AvaI	CYCGRG	1 cut(s)	1256
AvaII	GGWCC	2 cut(s)	230, 1148
BalI	TGGCCA	1 cut(s)	1276
Bbv12I	GWGCWC	2 cut(s)	154, 1340
BccI	CCATC	6 cut(s)	4, 104, 213, 451, 841, 1338
BciT130I	CCWGG	3 cut(s)	945, 992, 1140
BclI	TGATCA	2 cut(s)	583, 1197
BcoDI	GTCTC	3 cut(s)	67, 122, 927
BfmI	CTRYAG	2 cut(s)	612, 1011
BlpI	GCTNAGC	2 cut(s)	210, 1050
BmcAI	AGTACT	1 cut(s)	401
Bme1390I	CCNGG	3 cut(s)	945, 992, 1140
Bme18I	GGWCC	2 cut(s)	230, 1148
BmeT110I	CYCGRG	1 cut(s)	1256
BmgBI	CACGTC	1 cut(s)	1243
BmgT120I	GGNCC	4 cut(s)	201, 230, 858, 1148
BmiI	GGNNCC	2 cut(s)	91, 989
BmrFI	CCNGG	3 cut(s)	945, 992, 1140
BmsI	GCATC	3 cut(s)	334, 449, 555
BplI	GAGNNNNNCTC	2 cut(s)	847, 879
Bpu10I	CCTNAGC	1 cut(s)	372
Bpu1102I	GCTNAGC	2 cut(s)	210, 1050
BpuEI	CTTGAG	2 cut(s)	648, 1418
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	6 cut(s)	192, 361, 652, 943, 1138, 1296
BsaXI	ACNNNNNCTCC	4 cut(s)	360, 390, 709, 739
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 86, 198, 1145
Bse1I	ACTGG	6 cut(s)	133, 322, 397, 706, 964, 989
BseBI	CCWGG	3 cut(s)	945, 992, 1140
BseDI	CCNNGG	6 cut(s)	192, 361, 652, 943, 1138, 1296
BseGI	GGATG	3 cut(s)	224, 349, 795
BseLI	CCNNNNNNNGG	4 cut(s)	83, 86, 198, 1145
BseMII	CTCAG	3 cut(s)	78, 224, 1064
BseNI	ACTGG	6 cut(s)	133, 322, 397, 706, 964, 989
BseRI	GAGGAG	2 cut(s)	760, 944
BseYI	CCCAGC	1 cut(s)	1415
BshFI	GGCC	4 cut(s)	203, 651, 860, 1276
BsiHKAI	GWGCWC	2 cut(s)	154, 1340
BsiHKCI	CYCGRG	1 cut(s)	1256
BsiSI	CCGG	1 cut(s)	303
BslI	CCNNNNNNNGG	4 cut(s)	83, 86, 198, 1145
BsmAI	GTCTC	3 cut(s)	67, 122, 927
BsmBI	CGTCTC	2 cut(s)	67, 122
BsnI	GGCC	4 cut(s)	203, 651, 860, 1276
BsoBI	CYCGRG	1 cut(s)	1256
Bsp1286I	GDGCHC	2 cut(s)	154, 1340
Bsp143I	GATC	8 cut(s)	353, 583, 824, 1197, 1212, 1221, 1323, 1429
Bsp1720I	GCTNAGC	2 cut(s)	210, 1050
BspACI	CCGC	1 cut(s)	1080
BspANI	GGCC	4 cut(s)	203, 651, 860, 1276
BspCNI	CTCAG	3 cut(s)	77, 223, 1063
BspLI	GGNNCC	2 cut(s)	91, 989
BspMAI	CTGCAG	1 cut(s)	616
BspPI	GGATC	3 cut(s)	819, 1216, 1318
BsrI	ACTGG	6 cut(s)	133, 322, 397, 706, 964, 989
BssECI	CCNNGG	6 cut(s)	192, 361, 652, 943, 1138, 1296
BssMI	GATC	8 cut(s)	353, 583, 824, 1197, 1212, 1221, 1323, 1429
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	3 cut(s)	192, 361, 652
Bst2UI	CCWGG	3 cut(s)	945, 992, 1140
Bst4CI	ACNGT	4 cut(s)	136, 721, 1210, 1285
Bst6I	CTCTTC	3 cut(s)	285, 848, 1172
BstACI	GRCGYC	1 cut(s)	60
BstAPI	GCANNNNNTGC	1 cut(s)	1400
BstC8I	GCNNGC	3 cut(s)	292, 1375, 1405
BstDEI	CTNAG	5 cut(s)	64, 210, 372, 1050, 1364
BstDSI	CCRYGG	1 cut(s)	1296
BstENI	CCTNNNNNAGG	1 cut(s)	81
BstF5I	GGATG	3 cut(s)	224, 349, 795
BstKTI	GATC	8 cut(s)	356, 586, 827, 1200, 1215, 1224, 1326, 1432
BstMAI	GTCTC	3 cut(s)	67, 122, 927
BstMBI	GATC	8 cut(s)	353, 583, 824, 1197, 1212, 1221, 1323, 1429
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 668, 1007, 1400
BstNI	CCWGG	3 cut(s)	945, 992, 1140
BstNSI	RCATGY	1 cut(s)	901
BstSCI	CCNGG	3 cut(s)	943, 990, 1138
BstSFI	CTRYAG	2 cut(s)	612, 1011
BstX2I	RGATCY	2 cut(s)	824, 1323
BstXI	CCANNNNNNTGG	4 cut(s)	491, 761, 1028, 1139
BstYI	RGATCY	2 cut(s)	824, 1323
BsuRI	GGCC	4 cut(s)	203, 651, 860, 1276
BtgI	CCRYGG	1 cut(s)	1296
BtrI	CACGTC	1 cut(s)	1243
BtsCI	GGATG	3 cut(s)	224, 349, 795
BtsIMutI	CAGTG	5 cut(s)	315, 717, 957, 1206, 1432
Cac8I	GCNNGC	3 cut(s)	292, 1375, 1405
CaiI	CAGNNNCTG	2 cut(s)	1400, 1464
Cfr13I	GGNCC	4 cut(s)	201, 230, 858, 1148
Csp6I	GTAC	1 cut(s)	400
CspCI	CAANNNNNGTGG	8 cut(s)	367, 402, 475, 510, 575, 610, 722, 757
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	5 cut(s)	64, 210, 372, 1050, 1364
DpnI	GATC	8 cut(s)	355, 585, 826, 1199, 1214, 1223, 1325, 1431
DpnII	GATC	8 cut(s)	353, 583, 824, 1197, 1212, 1221, 1323, 1429
DraIII	CACNNNGTG	1 cut(s)	764
EaeI	YGGCCR	1 cut(s)	1274
Eam1104I	CTCTTC	3 cut(s)	285, 848, 1172
EarI	CTCTTC	3 cut(s)	285, 848, 1172
Eco130I	CCWWGG	3 cut(s)	192, 361, 652
Eco47I	GGWCC	2 cut(s)	230, 1148
Eco57I	CTGAAG	1 cut(s)	1153
Eco88I	CYCGRG	1 cut(s)	1256
EcoNI	CCTNNNNNAGG	1 cut(s)	81
EcoRII	CCWGG	3 cut(s)	943, 990, 1138
EcoT14I	CCWWGG	3 cut(s)	192, 361, 652
ErhI	CCWWGG	3 cut(s)	192, 361, 652
Esp3I	CGTCTC	2 cut(s)	67, 122
FalI	AAGNNNNNCTT	2 cut(s)	1357, 1389
FbaI	TGATCA	2 cut(s)	583, 1197
FblI	GTMKAC	1 cut(s)	1440
FokI	GGATG	3 cut(s)	231, 356, 782
GsaI	CCCAGC	1 cut(s)	1419
HaeIII	GGCC	4 cut(s)	203, 651, 860, 1276
HapII	CCGG	1 cut(s)	303
Hin1I	GRCGYC	1 cut(s)	60
HinfI	GANTC	6 cut(s)	308, 502, 724, 839, 1128, 1143
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	3 cut(s)	26, 35, 776
Hpy166II	GTNNAC	3 cut(s)	1021, 1288, 1441
Hpy188I	TCNGA	3 cut(s)	838, 1127, 1172
Hpy188III	TCNNGA	3 cut(s)	812, 1114, 1453
Hpy8I	GTNNAC	3 cut(s)	1021, 1288, 1441
Hpy99I	CGWCG	1 cut(s)	1244
HpyAV	CCTTC	3 cut(s)	243, 634, 1240
HpyCH4III	ACNGT	4 cut(s)	136, 721, 1210, 1285
HpyCH4IV	ACGT	2 cut(s)	60, 1242
HpyCH4V	TGCA	6 cut(s)	614, 671, 733, 779, 912, 1034
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 668, 1007, 1400
HpyF3I	CTNAG	5 cut(s)	64, 210, 372, 1050, 1364
HpySE526I	ACGT	2 cut(s)	60, 1242
Hsp92I	GRCGYC	1 cut(s)	60
Ksp22I	TGATCA	2 cut(s)	583, 1197
Kzo9I	GATC	8 cut(s)	353, 583, 824, 1197, 1212, 1221, 1323, 1429
LmnI	GCTCC	4 cut(s)	95, 368, 993, 1335
LweI	GCATC	3 cut(s)	334, 449, 555
MaeII	ACGT	2 cut(s)	60, 1242
MaeIII	GTNAC	6 cut(s)	14, 259, 313, 721, 764, 880
MalI	GATC	8 cut(s)	355, 585, 826, 1199, 1214, 1223, 1325, 1431
MboI	GATC	8 cut(s)	353, 583, 824, 1197, 1212, 1221, 1323, 1429
MboII	GAAGA	6 cut(s)	272, 511, 865, 1159, 1225, 1333
MfeI	CAATTG	2 cut(s)	639, 1410
MflI	RGATCY	2 cut(s)	824, 1323
MhlI	GDGCHC	2 cut(s)	154, 1340
MlsI	TGGCCA	1 cut(s)	1276
MluCI	AATT	9 cut(s)	51, 555, 570, 639, 657, 807, 867, 1091, 1410
MluNI	TGGCCA	1 cut(s)	1276
MlyI	GAGTC	2 cut(s)	718, 1122
MmeI	TCCRAC	1 cut(s)	1228
Mox20I	TGGCCA	1 cut(s)	1276
MscI	TGGCCA	1 cut(s)	1276
MseI	TTAA	1 cut(s)	1161
MslI	CAYNNNNRTG	1 cut(s)	489
Msp20I	TGGCCA	1 cut(s)	1276
MspA1I	CMGCKG	1 cut(s)	1397
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	3 cut(s)	945, 992, 1140
MunI	CAATTG	2 cut(s)	639, 1410
MvaI	CCWGG	3 cut(s)	945, 992, 1140
MwoI	GCNNNNNNNGC	4 cut(s)	96, 668, 1007, 1400
NdeII	GATC	8 cut(s)	353, 583, 824, 1197, 1212, 1221, 1323, 1429
NlaIV	GGNNCC	2 cut(s)	91, 989
NmuCI	GTSAC	6 cut(s)	14, 259, 313, 721, 764, 880
NspI	RCATGY	1 cut(s)	901
OliI	CACNNNNGTG	1 cut(s)	489
PcsI	WCGNNNNNNNCGW	1 cut(s)	121
PfeI	GAWTC	4 cut(s)	308, 502, 839, 1143
PfoI	TCCNGGA	1 cut(s)	990
PleI	GAGTC	2 cut(s)	718, 1122
PpsI	GAGTC	2 cut(s)	718, 1122
PsiI	TTATAA	1 cut(s)	1382
Psp6I	CCWGG	3 cut(s)	943, 990, 1138
PspFI	CCCAGC	1 cut(s)	1415
PspGI	CCWGG	3 cut(s)	943, 990, 1138
PspN4I	GGNNCC	2 cut(s)	91, 989
PspPI	GGNCC	4 cut(s)	201, 230, 858, 1148
PstI	CTGCAG	1 cut(s)	616
PstNI	CAGNNNCTG	2 cut(s)	1400, 1464
PsuI	RGATCY	2 cut(s)	824, 1323
PvuII	CAGCTG	1 cut(s)	1397
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	1 cut(s)	1161
Sau3AI	GATC	8 cut(s)	353, 583, 824, 1197, 1212, 1221, 1323, 1429
Sau96I	GGNCC	4 cut(s)	201, 230, 858, 1148
ScaI	AGTACT	1 cut(s)	401
SchI	GAGTC	2 cut(s)	718, 1122
ScrFI	CCNGG	3 cut(s)	945, 992, 1140
SduI	GDGCHC	2 cut(s)	154, 1340
SfaNI	GCATC	3 cut(s)	334, 449, 555
SfcI	CTRYAG	2 cut(s)	612, 1011
SinI	GGWCC	2 cut(s)	230, 1148
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	2 cut(s)	663, 1433
SmoI	CTYRAG	2 cut(s)	663, 1433
Sse9I	AATT	9 cut(s)	51, 555, 570, 639, 657, 807, 867, 1091, 1410
SsiI	CCGC	1 cut(s)	1080
StyD4I	CCNGG	3 cut(s)	943, 990, 1138
StyI	CCWWGG	3 cut(s)	192, 361, 652
TaaI	ACNGT	4 cut(s)	136, 721, 1210, 1285
TaiI	ACGT	2 cut(s)	63, 1245
TaqI	TCGA	1 cut(s)	356
TaqII	GACCGA	1 cut(s)	1136
TasI	AATT	9 cut(s)	51, 555, 570, 639, 657, 807, 867, 1091, 1410
TatI	WGTACW	1 cut(s)	399
TfiI	GAWTC	4 cut(s)	308, 502, 839, 1143
Tru1I	TTAA	1 cut(s)	1161
Tru9I	TTAA	1 cut(s)	1161
TscAI	CASTG	5 cut(s)	322, 724, 964, 1213, 1432
TseFI	GTSAC	6 cut(s)	14, 259, 313, 721, 764, 880
Tsp45I	GTSAC	6 cut(s)	14, 259, 313, 721, 764, 880
TspDTI	ATGAA	3 cut(s)	29, 866, 1099
TspRI	CASTG	5 cut(s)	322, 724, 964, 1213, 1432
VpaK11BI	GGWCC	2 cut(s)	230, 1148
XagI	CCTNNNNNAGG	1 cut(s)	81
XapI	RAATTY	4 cut(s)	51, 570, 807, 1091
XceI	RCATGY	1 cut(s)	901
XcmI	CCANNNNNNNNNTGG	1 cut(s)	491
XmiI	GTMKAC	1 cut(s)	1440
ZraI	GACGTC	1 cut(s)	61
ZrmI	AGTACT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.