FvH4_2g27660

Amino acid permease

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
21890953 .. 21893900
2948 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g27660.t2

Sequence Viewer

Length: 1443 bp
ATGGCAACTGTTCTTCCCCAACACCAGGCTTTTGATGTCTCTGTGGATGTGCAACCACAGAGCGGCTCTAAGTGTTTCGATGACGATGGCCGTCTCAAACGAACTGGAACTGTTTGGACCGCAAGTGCTCATATTATTACTGCTGTGATTGGTTCTGGTGTGCTGGCTTTAGCTTGGGCCACAGCTCAACTTGGATGGGTTGCTGGTCCTGCTGTGATGCTCTTGTTCGCTTTTGTCACTTACTACACTTCAACTCTTCTCTCTTTTTGTTACCGTACTGGTGATCCCGTTACTGGCAAGAGAAATTACACTTACACAGATGCTGTCAGATCCAACCTTGGTGGGTACAAGGTGAAGATATGTGGGTTTGTTCAGTACTTGAATCTTTTTGGAGTTGCCATTGGCTACACTATAGCATCATCTATAAGCATGGTGGCTATAAAGAGGTCTAACTGCTTCCACAGCAGTGATGGAAAAGATGAGTGTCATGTGAACAGCAATCCTTATATGATTGCTTTTGGCATTGCAGAAATCATATTTTCTCAGATTGAAAACTTTGATCAGCTATGGTGGCTCTCCATTGTTGCTGCAGTCATGTCCTTCACTTACTCCACTATTGGACTTGGTCTTGGAATTGGGAAAGTTGTAGAAACTGGAACTATTAGGGGAAGCATGACTGGAGTAGACATCGGAACAGTGACTGAGGCTCAAAAGATATGGAGGAGCTTCCAAGCACTTGGTGACATAGCCTTTGCCTACTCCTACTCTCTCATCCTGATTGAAATTCAGGACACTGTGAAATCCCCACCATCGGAAGCCAAGACAATGAGGAAGGCAACTCTAATCAGTGTGGCAACCACAACCCTTTTCTACATGCTGTGTGGCTGCATGGGATATGCTGCTTTTGGGGATGCATCCCCCGGAAACCTCCTCACCGGTTTCGGTTTCTACAACCCTTACTGGCTCATTGACATTGCCAATGCTGCCATAGTCATCCATCTCGTTGGTGCCTACCAAGTCTTTGTGCAACCCCTCTTTGCTTTTGTTGAGAAATCAGCAGCAGAAAAGTTCCCAGATAGTCAATTCATCTCCAAAAACATCAAAATCCAAATCCCTTGTGTCGGTCTCTACAACCTTAACATGTTCAGATTGGTGTGGAGGACACTTTTTGTGATCACAACCACTGTGATCTCCATGATCCTTCCATTCTTTAACGATGTCGTTGGCCTTCTTGGCGCTTTGGGATTTTGGCCACTCACAGTGTACTTCCCTGTGGAGATGTACATTGTCCAGAAGAGAATTCCAAAATGGAGCACCAAATGGCTTTGCCTCCAAACACTAAGCGGCGCTTGCCTCATAATCACCATAGCTGCTGCTGCCGGCTCAATCGCCGGGGTGATTTCCGACCTCAAGACCTACAAGCCATTCCAATCCAGCTACTGA

Protein Analysis

481

Amino Acids

52.52

Weight (kDa)

8.54

Isoelectric Point (pI)

34.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 1 - 324 1.3e-81 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1007
AccBSI CCGCTC 1 cut(s) 63
AccI GTMKAC 1 cut(s) 684
AciI CCGC 3 cut(s) 63, 120, 1344
AclWI GGATC 3 cut(s) 278, 324, 1192
AcoI YGGCCR 2 cut(s) 88, 1250
AcsI RAATTY 2 cut(s) 783, 1299
AdeI CACNNNGTG 1 cut(s) 740
AfaI GTAC 5 cut(s) 277, 347, 377, 1265, 1283
AfiI CCNNNNNNNGG 5 cut(s) 25, 62, 293, 811, 1121
AflIII ACRYGT 1 cut(s) 1140
AgeI ACCGGT 1 cut(s) 935
AgsI TTSAA 4 cut(s) 252, 382, 551, 782
AjnI CCWGG 1 cut(s) 24
AleI CACNNNNGTG 1 cut(s) 465
AluBI AGCT 6 cut(s) 173, 185, 565, 726, 1370, 1437
AluI AGCT 6 cut(s) 173, 185, 565, 726, 1370, 1437
Alw21I GWGCWC 2 cut(s) 130, 1316
Alw26I GTCTC 3 cut(s) 43, 98, 1130
AlwI GGATC 3 cut(s) 278, 324, 1192
AlwNI CAGNNNCTG 3 cut(s) 323, 701, 1440
AoxI GGCC 4 cut(s) 88, 177, 1225, 1250
ApeKI GCWGC 8 cut(s) 587, 885, 899, 983, 1058, 1370, 1373, 1376
ApoI RAATTY 2 cut(s) 783, 1299
ArsI GACNNNNNNTTYG 2 cut(s) 734, 766
AsiGI ACCGGT 1 cut(s) 935
AspLEI GCGC 2 cut(s) 1238, 1349
AspS9I GGNCC 3 cut(s) 117, 177, 206
AsuC2I CCSGG 2 cut(s) 921, 1393
AsuHPI GGTGA 6 cut(s) 293, 364, 752, 925, 1354, 1408
AvaII GGWCC 2 cut(s) 117, 206
BalI TGGCCA 1 cut(s) 1252
BanI GGYRCC 1 cut(s) 1007
Bbv12I GWGCWC 2 cut(s) 130, 1316
BbvI GCAGC 8 cut(s) 574, 872, 886, 970, 1070, 1357, 1360, 1363
BccI CCATC 5 cut(s) 80, 189, 464, 817, 1005
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 26
BclI TGATCA 2 cut(s) 559, 1173
BcnI CCSGG 2 cut(s) 921, 1393
BcoDI GTCTC 3 cut(s) 43, 98, 1130
BfmI CTRYAG 2 cut(s) 411, 588
BfoI RGCGCY 2 cut(s) 1239, 1350
BglI GCCNNNNNGGC 1 cut(s) 1233
BmcAI AGTACT 1 cut(s) 377
Bme1390I CCNGG 3 cut(s) 26, 921, 1393
Bme18I GGWCC 2 cut(s) 117, 206
BmgT120I GGNCC 3 cut(s) 117, 177, 206
BmiI GGNNCC 1 cut(s) 1009
BmrFI CCNGG 3 cut(s) 26, 921, 1393
BmsI GCATC 5 cut(s) 207, 310, 425, 901, 923
BpmI CTGGAG 1 cut(s) 699
BpuEI CTTGAG 1 cut(s) 1394
BpuMI CCSGG 2 cut(s) 921, 1393
BsaI GGTCTC 1 cut(s) 1130
BsaJI CCNNGG 3 cut(s) 337, 919, 1392
BsaWI WCCGGW 1 cut(s) 935
Bsc4I CCNNNNNNNGG 5 cut(s) 25, 62, 293, 811, 1121
Bse118I RCCGGY 2 cut(s) 935, 1379
Bse1I ACTGG 6 cut(s) 109, 283, 298, 658, 682, 965
Bse3DI GCAATG 2 cut(s) 522, 972
BseBI CCWGG 1 cut(s) 26
BseDI CCNNGG 3 cut(s) 337, 919, 1392
BseGI GGATG 6 cut(s) 52, 200, 771, 914, 916, 993
BseLI CCNNNNNNNGG 5 cut(s) 25, 62, 293, 811, 1121
BseMI GCAATG 2 cut(s) 522, 972
BseMII CTCAG 2 cut(s) 557, 693
BseNI ACTGG 6 cut(s) 109, 283, 298, 658, 682, 965
BseRI GAGGAG 2 cut(s) 736, 920
BseXI GCAGC 8 cut(s) 574, 872, 886, 970, 1070, 1357, 1360, 1363
BshFI GGCC 4 cut(s) 90, 179, 1227, 1252
BshNI GGYRCC 1 cut(s) 1007
BshTI ACCGGT 1 cut(s) 935
BsiHKAI GWGCWC 2 cut(s) 130, 1316
BsiSI CCGG 4 cut(s) 921, 936, 1380, 1392
BslI CCNNNNNNNGG 5 cut(s) 25, 62, 293, 811, 1121
BsmAI GTCTC 3 cut(s) 43, 98, 1130
BsmBI CGTCTC 1 cut(s) 98
BsnI GGCC 4 cut(s) 90, 179, 1227, 1252
Bso31I GGTCTC 1 cut(s) 1130
Bsp1286I GDGCHC 2 cut(s) 130, 1316
Bsp1407I TGTACA 1 cut(s) 1281
Bsp143I GATC 6 cut(s) 283, 329, 559, 1173, 1188, 1197
BspACI CCGC 3 cut(s) 63, 120, 1344
BspANI GGCC 4 cut(s) 90, 179, 1227, 1252
BspCNI CTCAG 2 cut(s) 556, 694
BspLI GGNNCC 1 cut(s) 1009
BspMAI CTGCAG 1 cut(s) 592
BspPI GGATC 3 cut(s) 278, 324, 1192
BspT107I GGYRCC 1 cut(s) 1007
BspTNI GGTCTC 1 cut(s) 1130
BsrBI CCGCTC 1 cut(s) 63
BsrDI GCAATG 2 cut(s) 522, 972
BsrFI RCCGGY 2 cut(s) 935, 1379
BsrGI TGTACA 1 cut(s) 1281
BsrI ACTGG 6 cut(s) 109, 283, 298, 658, 682, 965
BssAI RCCGGY 2 cut(s) 935, 1379
BssECI CCNNGG 3 cut(s) 337, 919, 1392
BssMI GATC 6 cut(s) 283, 329, 559, 1173, 1188, 1197
BssT1I CCWWGG 1 cut(s) 337
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 7 cut(s) 10, 112, 275, 697, 796, 1186, 1261
Bst6I CTCTTC 2 cut(s) 261, 1289
BstAUI TGTACA 1 cut(s) 1281
BstC8I GCNNGC 3 cut(s) 165, 1351, 1381
BstDEI CTNAG 4 cut(s) 69, 543, 702, 1340
BstF5I GGATG 6 cut(s) 52, 200, 771, 914, 916, 993
BstH2I RGCGCY 2 cut(s) 1239, 1350
BstHHI GCGC 2 cut(s) 1238, 1349
BstKTI GATC 6 cut(s) 286, 332, 562, 1176, 1191, 1200
BstMAI GTCTC 3 cut(s) 43, 98, 1130
BstMBI GATC 6 cut(s) 283, 329, 559, 1173, 1188, 1197
BstMWI GCNNNNNNNGC 7 cut(s) 209, 462, 571, 983, 1233, 1350, 1376
BstNI CCWGG 1 cut(s) 26
BstNSI RCATGY 2 cut(s) 877, 1144
BstSCI CCNGG 3 cut(s) 24, 919, 1391
BstSFI CTRYAG 2 cut(s) 411, 588
BstV1I GCAGC 8 cut(s) 574, 872, 886, 970, 1070, 1357, 1360, 1363
BstX2I RGATCY 1 cut(s) 329
BstXI CCANNNNNNTGG 2 cut(s) 737, 1004
BstYI RGATCY 1 cut(s) 329
BsuRI GGCC 4 cut(s) 90, 179, 1227, 1252
BtsCI GGATG 6 cut(s) 52, 200, 771, 914, 916, 993
BtsI GCAGTG 1 cut(s) 472
BtsIMutI CAGTG 6 cut(s) 472, 702, 792, 853, 1182, 1266
Cac8I GCNNGC 3 cut(s) 165, 1351, 1381
CaiI CAGNNNCTG 3 cut(s) 323, 701, 1440
CfoI GCGC 2 cut(s) 1238, 1349
Cfr10I RCCGGY 2 cut(s) 935, 1379
Cfr13I GGNCC 3 cut(s) 117, 177, 206
Csp6I GTAC 5 cut(s) 276, 346, 376, 1264, 1282
CspAI ACCGGT 1 cut(s) 935
CspCI CAANNNNNGTGG 2 cut(s) 322, 357
CviAII CATG 8 cut(s) 430, 488, 595, 673, 874, 889, 1141, 1195
CviQI GTAC 5 cut(s) 276, 346, 376, 1264, 1282
DdeI CTNAG 4 cut(s) 69, 543, 702, 1340
DpnI GATC 6 cut(s) 285, 331, 561, 1175, 1190, 1199
DpnII GATC 6 cut(s) 283, 329, 559, 1173, 1188, 1197
DraIII CACNNNGTG 1 cut(s) 740
EaeI YGGCCR 2 cut(s) 88, 1250
Eam1104I CTCTTC 2 cut(s) 261, 1289
EarI CTCTTC 2 cut(s) 261, 1289
Eco130I CCWWGG 1 cut(s) 337
Eco31I GGTCTC 1 cut(s) 1130
Eco47I GGWCC 2 cut(s) 117, 206
EcoRI GAATTC 1 cut(s) 1299
EcoRII CCWGG 1 cut(s) 24
EcoT14I CCWWGG 1 cut(s) 337
EcoT22I ATGCAT 1 cut(s) 916
ErhI CCWWGG 1 cut(s) 337
Esp3I CGTCTC 1 cut(s) 98
FaeI CATG 8 cut(s) 433, 491, 598, 676, 877, 892, 1144, 1198
FalI AAGNNNNNCTT 2 cut(s) 1333, 1365
FatI CATG 8 cut(s) 429, 487, 594, 672, 873, 888, 1140, 1194
FbaI TGATCA 2 cut(s) 559, 1173
FblI GTMKAC 1 cut(s) 684
FokI GGATG 6 cut(s) 59, 207, 758, 901, 923, 980
GlaI GCGC 2 cut(s) 1237, 1348
GsuI CTGGAG 1 cut(s) 699
HaeII RGCGCY 2 cut(s) 1239, 1350
HaeIII GGCC 4 cut(s) 90, 179, 1227, 1252
HapII CCGG 4 cut(s) 921, 936, 1380, 1392
HhaI GCGC 2 cut(s) 1238, 1349
Hin1II CATG 8 cut(s) 433, 491, 598, 676, 877, 892, 1144, 1198
Hin6I GCGC 2 cut(s) 1236, 1347
HinP1I GCGC 2 cut(s) 1236, 1347
HinfI GANTC 1 cut(s) 382
HpaII CCGG 4 cut(s) 921, 936, 1380, 1392
HphI GGTGA 6 cut(s) 293, 364, 752, 925, 1354, 1408
Hpy166II GTNNAC 3 cut(s) 493, 685, 1264
Hpy188I TCNGA 6 cut(s) 329, 546, 692, 814, 1148, 1405
Hpy188III TCNNGA 4 cut(s) 775, 788, 1291, 1411
Hpy8I GTNNAC 3 cut(s) 493, 685, 1264
HpyAV CCTTC 4 cut(s) 610, 826, 1211, 1238
HpyCH4III ACNGT 7 cut(s) 10, 112, 275, 697, 796, 1186, 1261
HpyCH4V TGCA 6 cut(s) 52, 527, 590, 888, 914, 1027
HpyF10VI GCNNNNNNNGC 7 cut(s) 209, 462, 571, 983, 1233, 1350, 1376
HpyF3I CTNAG 4 cut(s) 69, 543, 702, 1340
Hsp92II CATG 8 cut(s) 433, 491, 598, 676, 877, 892, 1144, 1198
HspAI GCGC 2 cut(s) 1236, 1347
KroI GCCGGC 1 cut(s) 1379
KroNI GCCGGC 1 cut(s) 1381
Ksp22I TGATCA 2 cut(s) 559, 1173
Kzo9I GATC 6 cut(s) 283, 329, 559, 1173, 1188, 1197
LmnI GCTCC 2 cut(s) 723, 1311
Lsp1109I GCAGC 8 cut(s) 574, 872, 886, 970, 1070, 1357, 1360, 1363
LweI GCATC 5 cut(s) 207, 310, 425, 901, 923
MaeIII GTNAC 5 cut(s) 235, 269, 289, 697, 740
MalI GATC 6 cut(s) 285, 331, 561, 1175, 1190, 1199
MbiI CCGCTC 1 cut(s) 63
MboI GATC 6 cut(s) 283, 329, 559, 1173, 1188, 1197
MboII GAAGA 4 cut(s) 5, 248, 367, 1306
MflI RGATCY 1 cut(s) 329
MhlI GDGCHC 2 cut(s) 130, 1316
MlsI TGGCCA 1 cut(s) 1252
MluCI AATT 5 cut(s) 304, 633, 783, 1082, 1299
MluNI TGGCCA 1 cut(s) 1252
MmeI TCCRAC 2 cut(s) 357, 1428
Mox20I TGGCCA 1 cut(s) 1252
Mph1103I ATGCAT 1 cut(s) 916
MroNI GCCGGC 1 cut(s) 1379
MscI TGGCCA 1 cut(s) 1252
MseI TTAA 2 cut(s) 1137, 1212
MslI CAYNNNNRTG 1 cut(s) 465
Msp20I TGGCCA 1 cut(s) 1252
MspI CCGG 4 cut(s) 921, 936, 1380, 1392
MspR9I CCNGG 3 cut(s) 26, 921, 1393
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 7 cut(s) 209, 462, 571, 983, 1233, 1350, 1376
NaeI GCCGGC 1 cut(s) 1381
NciI CCSGG 2 cut(s) 921, 1393
NdeII GATC 6 cut(s) 283, 329, 559, 1173, 1188, 1197
NgoMIV GCCGGC 1 cut(s) 1379
NlaIII CATG 8 cut(s) 433, 491, 598, 676, 877, 892, 1144, 1198
NlaIV GGNNCC 1 cut(s) 1009
NmuCI GTSAC 3 cut(s) 235, 697, 740
NsiI ATGCAT 1 cut(s) 916
NspI RCATGY 2 cut(s) 877, 1144
OliI CACNNNNGTG 1 cut(s) 465
PciI ACATGT 1 cut(s) 1140
PdiI GCCGGC 1 cut(s) 1381
PfeI GAWTC 1 cut(s) 382
PflFI GACNNNGTC 1 cut(s) 624
PinAI ACCGGT 1 cut(s) 935
PscI ACATGT 1 cut(s) 1140
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 1009
PspPI GGNCC 3 cut(s) 117, 177, 206
PstI CTGCAG 1 cut(s) 592
PstNI CAGNNNCTG 3 cut(s) 323, 701, 1440
PsuI RGATCY 1 cut(s) 329
PsyI GACNNNGTC 1 cut(s) 624
RsaI GTAC 5 cut(s) 277, 347, 377, 1265, 1283
RsaNI GTAC 5 cut(s) 276, 346, 376, 1264, 1282
RseI CAYNNNNRTG 1 cut(s) 465
SaqAI TTAA 2 cut(s) 1137, 1212
Sau3AI GATC 6 cut(s) 283, 329, 559, 1173, 1188, 1197
Sau96I GGNCC 3 cut(s) 117, 177, 206
ScaI AGTACT 1 cut(s) 377
ScrFI CCNGG 3 cut(s) 26, 921, 1393
SduI GDGCHC 2 cut(s) 130, 1316
SfaNI GCATC 5 cut(s) 207, 310, 425, 901, 923
SfcI CTRYAG 2 cut(s) 411, 588
SinI GGWCC 2 cut(s) 117, 206
SmiMI CAYNNNNRTG 1 cut(s) 465
SmlI CTYRAG 1 cut(s) 1409
SmoI CTYRAG 1 cut(s) 1409
Sse9I AATT 5 cut(s) 304, 633, 783, 1082, 1299
SsiI CCGC 3 cut(s) 63, 120, 1344
StyD4I CCNGG 3 cut(s) 24, 919, 1391
StyI CCWWGG 1 cut(s) 337
TaaI ACNGT 7 cut(s) 10, 112, 275, 697, 796, 1186, 1261
TaqI TCGA 1 cut(s) 78
TaqII GACCGA 1 cut(s) 1112
TasI AATT 5 cut(s) 304, 633, 783, 1082, 1299
TatI WGTACW 3 cut(s) 375, 1263, 1281
TauI GCSGC 2 cut(s) 66, 1347
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 2 cut(s) 1137, 1212
Tru9I TTAA 2 cut(s) 1137, 1212
TscAI CASTG 6 cut(s) 472, 702, 799, 853, 1189, 1266
TseFI GTSAC 3 cut(s) 235, 697, 740
TseI GCWGC 8 cut(s) 587, 885, 899, 983, 1058, 1370, 1373, 1376
Tsp45I GTSAC 3 cut(s) 235, 697, 740
TspDTI ATGAA 1 cut(s) 1075
TspRI CASTG 6 cut(s) 472, 702, 799, 853, 1189, 1266
Tth111I GACNNNGTC 1 cut(s) 624
VpaK11BI GGWCC 2 cut(s) 117, 206
XapI RAATTY 2 cut(s) 783, 1299
XceI RCATGY 2 cut(s) 877, 1144
XcmI CCANNNNNNNNNTGG 1 cut(s) 467
XmiI GTMKAC 1 cut(s) 684
ZrmI AGTACT 1 cut(s) 377
Zsp2I ATGCAT 1 cut(s) 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.