Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001778

Physical Location & Seq

Genomic Coordinates Reverse (-)

3963536 .. 3967001

Gene Structure 3466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g05160.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGAGTAAAATGGGTGATAACCAGATTAATCCCCGCCAAGGCTTTGAACTCTCAGTCCCTATGCCTCCAGAAGCAGGCTCCAAGTGCTATGACGACGACGGCCGTCTCAAAAGAACTGGAACTGTTTGGACTGCAAGTGCTCGTATTATTACTGCTGTAATTGGGTCCGGAGTTTTGTCCTTGGCTTGGGCAACAGCTCAGCTTGGATGGGTGGCTGGTCCTGCTGTGATGCTCATGTTCTCCTTTGTCACTTACTACACTTCAACTCTTCTCTCTGCCTGCTATCGTTCCGGCGATCCTGTCACCGGAAAGAGAAACTATACTTACACCGATGCCAAGCTGGTCCGATCCAACCTTGGTGGGTTCAAGGTGAAAGTTTGTGGGCTTGTTCAGTACTTGAATCTCTTATTTGGAGTTGCCATTAGCTACACTATAGCGTCATCCAAAAGCATGGTAGCAATTAAGAGGTCTAATTGCTTCTACAAGTATGGTGACAAAGCACCTTGCCATGTAAACAGCAATCCATACACGATCGCTTTTGGCGTAGCAGAAATCATATTCTCTCAAATTCCAGACTTTGATCAGTTGTGGTGGCTCTCCATTGTCGCTGCAGTCATGTCCTTCACTTATTCCTCAATCGGACTTGGGCTCGGAATCGCCAAAATCGTAGAAACTGGAACTATCAGAGGAAGTATGACTGGAATAGACACTGAAACAGTGACTGAAACAGAAAAAATATGGAGGAGATTCCAAGCAGTTGGTGACATAGCCTCTGCCTACTCATACTCTCTTGTCCTCATTGAAATTCAGGACACATTAAAATCCCCTCCATCCGAAGCCAAGACAATGAAGAAGGCAACTCTAGTCAGTGTGTCTACCACAACCCTTTTCTACATGTTGTGTGGTTGCATGGGCTACGCTGCTTTCGGAGACTCATCCCCTAGAAACCTCCTCACTGGTTTTGGCTTCTTCAACCCCTACTGGCTCATCGACATAGCCAACGCCGCCATTGTCATCCACCTTTTTGGCGCTTACCAAGTCTCCGTGCAGCCCCTCTATGCATTTGTTGAGAAAACAGCAAAACAAAAGTACCCACATAGCCAGTTCATCAACAAAGACATCAAATTCCGAATCCCCATTTTCGGTTCTTACAATCTCAACCTCTTCAGATTGGTTTGGAGGACATCTTTTGTGATTGTCACCACTGTGATCTCCATCGATCCTGCCATTTTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015318 GO:0015711 GO:0015802 GO:0015809 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

413

Amino Acids

45.42

Weight (kDa)

9.19

Isoelectric Point (pI)

34.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10010 AT1G10010 AT1G58360
fragaria_vesca	FvH4_2g27660 FvH4_2g27660 FvH4_2g27660 FvH4_2g27660 FvH4_2g27661 FvH4_2g27661 FvH4_5g12780
malus_domestica	MD00G1140000.v1.1 MD08G1158200.v1.1 MD15G1343500.v1.1 MD15G1343600.v1.1 MD15G1343900.v1.1
prunus_persica	Prupe.1G491000_v2.0.a1 Prupe.1G491000_v2.0.a1 Prupe.1G491000_v2.0.a1 Prupe.1G491100_v2.0.a1 Prupe.1G491200_v2.0.a1 Prupe.1G491300_v2.0.a1
pyrus_communis	pycom08g05160 pycom12419g00300 pycom15g30720
rosa_chinensis	RchiOBHm_Chr6g0296481 RchiOBHm_Chr6g0296511
rosa_laevigata	RLG00000011686 RLG00000011687 RLG00000011688
rosa_multiflora	Rmu_sc0001146.1_g000005 Rmu_sc0004318.1_g000010 Rmu_sc0006174.1_g000011
rosa_roxburghii	Rroxscaffold_7G00171480 Rroxscaffold_7G00171490 Rroxscaffold_7G00178640 Rroxscaffold_7G00178650
rosa_rugosa	Rorug06G0262800
rosa_samantha	Rh6AG374100 Rh6AG374300 Rh6BG382700 Rh6BG382800 Rh6CG387500 Rh6CG387800 Rh6DG375300 Rh6DG375500
rosa_wichuraiana	Rw6G032630 Rw6G032640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	875
AccIII	TCCGGA	1 cut(s)	167
AciI	CCGC	2 cut(s)	34, 1005
AclWI	GGATC	3 cut(s)	290, 342, 1214
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	3 cut(s)	567, 804, 1124
AcuI	CTGAAG	1 cut(s)	1150
AfaI	GTAC	2 cut(s)	395, 1091
AfiI	CCNNNNNNNGG	5 cut(s)	38, 74, 186, 305, 1142
AflIII	ACRYGT	1 cut(s)	894
AgsI	TTSAA	7 cut(s)	47, 264, 367, 400, 803, 973, 1235
AleI	CACNNNNGTG	1 cut(s)	1205
AloI	GAACNNNNNNTCC	2 cut(s)	39, 71
AluBI	AGCT	4 cut(s)	197, 202, 340, 426
AluI	AGCT	4 cut(s)	197, 202, 340, 426
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	3 cut(s)	110, 924, 1045
AlwI	GGATC	3 cut(s)	290, 342, 1214
AlwNI	CAGNNNCTG	1 cut(s)	722
Aor13HI	TCCGGA	1 cut(s)	167
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	3 cut(s)	608, 920, 1048
ApoI	RAATTY	3 cut(s)	567, 804, 1124
AseI	ATTAAT	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	1031
AspS9I	GGNCC	3 cut(s)	165, 218, 343
AsuHPI	GGTGA	6 cut(s)	26, 295, 382, 503, 773, 1192
AvaII	GGWCC	3 cut(s)	165, 218, 343
BaeI	ACNNNNGTAYC	2 cut(s)	1073, 1106
BanII	GRGCYC	1 cut(s)	651
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	3 cut(s)	595, 907, 1060
BccI	CCATC	3 cut(s)	201, 838, 1223
BceAI	ACGGC	2 cut(s)	87, 115
BclI	TGATCA	1 cut(s)	580
BcoDI	GTCTC	3 cut(s)	110, 924, 1045
BfaI	CTAG	2 cut(s)	863, 942
BfmI	CTRYAG	2 cut(s)	432, 609
BfoI	RGCGCY	1 cut(s)	1032
BisI	GCNGC	4 cut(s)	609, 921, 1005, 1049
BlpI	GCTNAGC	1 cut(s)	198
BlsI	GCNGC	4 cut(s)	610, 922, 1006, 1050
BmcAI	AGTACT	1 cut(s)	395
Bme18I	GGWCC	3 cut(s)	165, 218, 343
BmgT120I	GGNCC	3 cut(s)	165, 218, 343
BmiI	GGNNCC	2 cut(s)	79, 166
BmsI	GCATC	2 cut(s)	219, 322
BoxI	GACNNNNGTC	1 cut(s)	102
BpmI	CTGGAG	1 cut(s)	51
Bpu1102I	GCTNAGC	1 cut(s)	198
Bsa29I	ATCGAT	1 cut(s)	1218
BsaBI	GATNNNNATC	1 cut(s)	1214
BsaJI	CCNNGG	3 cut(s)	37, 180, 355
BsaWI	WCCGGW	2 cut(s)	167, 305
BsaXI	ACNNNNNCTCC	2 cut(s)	1025, 1055
Bsc4I	CCNNNNNNNGG	5 cut(s)	38, 74, 186, 305, 1142
Bse1I	ACTGG	6 cut(s)	121, 679, 703, 961, 986, 1102
Bse8I	GATNNNNATC	1 cut(s)	1214
BseAI	TCCGGA	1 cut(s)	167
BseCI	ATCGAT	1 cut(s)	1218
BseDI	CCNNGG	3 cut(s)	37, 180, 355
BseGI	GGATG	5 cut(s)	212, 440, 830, 935, 1014
BseJI	GATNNNNATC	1 cut(s)	1214
BseLI	CCNNNNNNNGG	5 cut(s)	38, 74, 186, 305, 1142
BseMII	CTCAG	2 cut(s)	66, 212
BseNI	ACTGG	6 cut(s)	121, 679, 703, 961, 986, 1102
BseRI	GAGGAG	2 cut(s)	757, 941
BseX3I	CGGCCG	1 cut(s)	100
BseXI	GCAGC	3 cut(s)	595, 907, 1060
BsgI	GTGCAG	1 cut(s)	1067
Bsh1285I	CGRYCG	2 cut(s)	103, 534
BshFI	GGCC	1 cut(s)	102
BshVI	ATCGAT	1 cut(s)	1218
BsiEI	CGRYCG	2 cut(s)	103, 534
BsiHKAI	GWGCWC	1 cut(s)	142
BsiSI	CCGG	3 cut(s)	168, 291, 306
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	5 cut(s)	38, 74, 186, 305, 1142
BsmAI	GTCTC	3 cut(s)	110, 924, 1045
BsmBI	CGTCTC	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	41
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	2 cut(s)	142, 651
Bsp13I	TCCGGA	1 cut(s)	167
Bsp143I	GATC	6 cut(s)	295, 347, 531, 580, 1209, 1219
Bsp1720I	GCTNAGC	1 cut(s)	198
BspACI	CCGC	2 cut(s)	34, 1005
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	2 cut(s)	65, 211
BspDI	ATCGAT	1 cut(s)	1218
BspEI	TCCGGA	1 cut(s)	167
BspLI	GGNNCC	2 cut(s)	79, 166
BspMAI	CTGCAG	1 cut(s)	613
BspPI	GGATC	3 cut(s)	290, 342, 1214
BsrI	ACTGG	6 cut(s)	121, 679, 703, 961, 986, 1102
BssECI	CCNNGG	3 cut(s)	37, 180, 355
BssMI	GATC	6 cut(s)	295, 347, 531, 580, 1209, 1219
BssT1I	CCWWGG	3 cut(s)	37, 180, 355
Bst4CI	ACNGT	3 cut(s)	124, 718, 1207
Bst6I	CTCTTC	2 cut(s)	273, 1169
BstC8I	GCNNGC	2 cut(s)	76, 280
BstDEI	CTNAG	2 cut(s)	52, 198
BstF5I	GGATG	5 cut(s)	212, 440, 830, 935, 1014
BstH2I	RGCGCY	1 cut(s)	1032
BstHHI	GCGC	1 cut(s)	1031
BstKTI	GATC	6 cut(s)	298, 350, 534, 583, 1212, 1222
BstMAI	GTCTC	3 cut(s)	110, 924, 1045
BstMBI	GATC	6 cut(s)	295, 347, 531, 580, 1209, 1219
BstMCI	CGRYCG	2 cut(s)	103, 534
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 221, 1004
BstNSI	RCATGY	1 cut(s)	898
BstPAI	GACNNNNGTC	1 cut(s)	102
BstSFI	CTRYAG	2 cut(s)	432, 609
BstV1I	GCAGC	3 cut(s)	595, 907, 1060
BstXI	CCANNNNNNTGG	3 cut(s)	451, 758, 1025
BstZI	CGGCCG	1 cut(s)	100
Bsu15I	ATCGAT	1 cut(s)	1218
BsuRI	GGCC	1 cut(s)	102
BsuTUI	ATCGAT	1 cut(s)	1218
BtsCI	GGATG	5 cut(s)	212, 440, 830, 935, 1014
BtsIMutI	CAGTG	5 cut(s)	708, 723, 874, 954, 1203
Cac8I	GCNNGC	2 cut(s)	76, 280
CaiI	CAGNNNCTG	1 cut(s)	722
CfoI	GCGC	1 cut(s)	1031
Cfr13I	GGNCC	3 cut(s)	165, 218, 343
ClaI	ATCGAT	1 cut(s)	1218
CseI	GACGC	1 cut(s)	426
Csp6I	GTAC	2 cut(s)	394, 1090
CspCI	CAANNNNNGTGG	2 cut(s)	340, 375
CviAII	CATG	6 cut(s)	235, 451, 509, 616, 895, 910
CviQI	GTAC	2 cut(s)	394, 1090
DdeI	CTNAG	2 cut(s)	52, 198
DpnI	GATC	6 cut(s)	297, 349, 533, 582, 1211, 1221
DpnII	GATC	6 cut(s)	295, 347, 531, 580, 1209, 1219
EaeI	YGGCCR	1 cut(s)	100
EagI	CGGCCG	1 cut(s)	100
Eam1104I	CTCTTC	2 cut(s)	273, 1169
EarI	CTCTTC	2 cut(s)	273, 1169
EclXI	CGGCCG	1 cut(s)	100
Eco130I	CCWWGG	3 cut(s)	37, 180, 355
Eco24I	GRGCYC	1 cut(s)	651
Eco47I	GGWCC	3 cut(s)	165, 218, 343
Eco52I	CGGCCG	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	1150
EcoT14I	CCWWGG	3 cut(s)	37, 180, 355
EcoT22I	ATGCAT	1 cut(s)	1063
EcoT38I	GRGCYC	1 cut(s)	651
ErhI	CCWWGG	3 cut(s)	37, 180, 355
Esp3I	CGTCTC	1 cut(s)	110
FaeI	CATG	6 cut(s)	238, 454, 512, 619, 898, 913
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	6 cut(s)	234, 450, 508, 615, 894, 909
FauI	CCCGC	1 cut(s)	41
FbaI	TGATCA	1 cut(s)	580
FblI	GTMKAC	1 cut(s)	875
Fnu4HI	GCNGC	4 cut(s)	609, 921, 1005, 1049
FokI	GGATG	5 cut(s)	219, 427, 817, 922, 1001
FriOI	GRGCYC	1 cut(s)	651
Fsp4HI	GCNGC	4 cut(s)	609, 921, 1005, 1049
FspBI	CTAG	2 cut(s)	863, 942
GlaI	GCGC	1 cut(s)	1030
GluI	GCNGC	4 cut(s)	609, 921, 1005, 1049
GsuI	CTGGAG	1 cut(s)	51
HaeII	RGCGCY	1 cut(s)	1032
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	3 cut(s)	168, 291, 306
HgaI	GACGC	1 cut(s)	426
HhaI	GCGC	1 cut(s)	1031
Hin1II	CATG	6 cut(s)	238, 454, 512, 619, 898, 913
Hin6I	GCGC	1 cut(s)	1029
HinP1I	GCGC	1 cut(s)	1029
HinfI	GANTC	5 cut(s)	400, 654, 747, 932, 1131
HpaII	CCGG	3 cut(s)	168, 291, 306
HphI	GGTGA	6 cut(s)	26, 295, 382, 503, 773, 1192
Hpy166II	GTNNAC	2 cut(s)	514, 876
Hpy188I	TCNGA	8 cut(s)	347, 641, 653, 686, 835, 929, 1130, 1169
Hpy188III	TCNNGA	4 cut(s)	68, 168, 572, 809
Hpy8I	GTNNAC	2 cut(s)	514, 876
Hpy99I	CGWCG	2 cut(s)	98, 101
HpyAV	CCTTC	2 cut(s)	631, 847
HpyCH4III	ACNGT	3 cut(s)	124, 718, 1207
HpyCH4V	TGCA	5 cut(s)	134, 611, 909, 1048, 1061
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 221, 1004
HpyF3I	CTNAG	2 cut(s)	52, 198
Hsp92II	CATG	6 cut(s)	238, 454, 512, 619, 898, 913
HspAI	GCGC	1 cut(s)	1029
Kpn2I	TCCGGA	1 cut(s)	167
Ksp22I	TGATCA	1 cut(s)	580
Kzo9I	GATC	6 cut(s)	295, 347, 531, 580, 1209, 1219
LmnI	GCTCC	1 cut(s)	83
Lsp1109I	GCAGC	3 cut(s)	595, 907, 1060
LweI	GCATC	2 cut(s)	219, 322
MaeI	CTAG	2 cut(s)	863, 942
MaeIII	GTNAC	6 cut(s)	247, 301, 491, 718, 761, 1198
MalI	GATC	6 cut(s)	297, 349, 533, 582, 1211, 1221
MboI	GATC	6 cut(s)	295, 347, 531, 580, 1209, 1219
MboII	GAAGA	4 cut(s)	260, 862, 961, 1156
MhlI	GDGCHC	2 cut(s)	142, 651
MluCI	AATT	6 cut(s)	159, 459, 472, 567, 804, 1124
MlyI	GAGTC	1 cut(s)	926
MmeI	TCCRAC	1 cut(s)	375
Mph1103I	ATGCAT	1 cut(s)	1063
MroI	TCCGGA	1 cut(s)	167
MseI	TTAA	3 cut(s)	27, 462, 818
MslI	CAYNNNNRTG	1 cut(s)	1205
MspI	CCGG	3 cut(s)	168, 291, 306
MwoI	GCNNNNNNNGC	3 cut(s)	84, 221, 1004
NdeII	GATC	6 cut(s)	295, 347, 531, 580, 1209, 1219
NlaIII	CATG	6 cut(s)	238, 454, 512, 619, 898, 913
NlaIV	GGNNCC	2 cut(s)	79, 166
NmuCI	GTSAC	6 cut(s)	247, 301, 491, 718, 761, 1198
NsiI	ATGCAT	1 cut(s)	1063
NspI	RCATGY	1 cut(s)	898
OliI	CACNNNNGTG	1 cut(s)	1205
PciI	ACATGT	1 cut(s)	894
PcsI	WCGNNNNNNNCGW	2 cut(s)	540, 663
PfeI	GAWTC	4 cut(s)	400, 654, 747, 1131
PkrI	GCNGC	4 cut(s)	610, 922, 1006, 1050
Ple19I	CGATCG	1 cut(s)	534
PleI	GAGTC	1 cut(s)	926
PpsI	GAGTC	1 cut(s)	926
PscI	ACATGT	1 cut(s)	894
PshAI	GACNNNNGTC	1 cut(s)	102
PshBI	ATTAAT	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	79, 166
PspPI	GGNCC	3 cut(s)	165, 218, 343
PstI	CTGCAG	1 cut(s)	613
PstNI	CAGNNNCTG	1 cut(s)	722
PvuI	CGATCG	1 cut(s)	534
RsaI	GTAC	2 cut(s)	395, 1091
RsaNI	GTAC	2 cut(s)	394, 1090
RseI	CAYNNNNRTG	1 cut(s)	1205
SaqAI	TTAA	3 cut(s)	27, 462, 818
SatI	GCNGC	4 cut(s)	609, 921, 1005, 1049
Sau3AI	GATC	6 cut(s)	295, 347, 531, 580, 1209, 1219
Sau96I	GGNCC	3 cut(s)	165, 218, 343
ScaI	AGTACT	1 cut(s)	395
SchI	GAGTC	1 cut(s)	926
SduI	GDGCHC	2 cut(s)	142, 651
SfaNI	GCATC	2 cut(s)	219, 322
SfcI	CTRYAG	2 cut(s)	432, 609
SinI	GGWCC	3 cut(s)	165, 218, 343
SmiMI	CAYNNNNRTG	1 cut(s)	1205
Sse9I	AATT	6 cut(s)	159, 459, 472, 567, 804, 1124
SsiI	CCGC	2 cut(s)	34, 1005
SspMI	CTAG	2 cut(s)	863, 942
StyI	CCWWGG	3 cut(s)	37, 180, 355
TaaI	ACNGT	3 cut(s)	124, 718, 1207
TaqI	TCGA	2 cut(s)	990, 1218
TasI	AATT	6 cut(s)	159, 459, 472, 567, 804, 1124
TatI	WGTACW	1 cut(s)	393
TauI	GCSGC	1 cut(s)	1007
TfiI	GAWTC	4 cut(s)	400, 654, 747, 1131
Tru1I	TTAA	3 cut(s)	27, 462, 818
Tru9I	TTAA	3 cut(s)	27, 462, 818
TscAI	CASTG	5 cut(s)	715, 723, 874, 961, 1210
TseFI	GTSAC	6 cut(s)	247, 301, 491, 718, 761, 1198
TseI	GCWGC	3 cut(s)	608, 920, 1048
Tsp45I	GTSAC	6 cut(s)	247, 301, 491, 718, 761, 1198
TspDTI	ATGAA	2 cut(s)	863, 1096
TspGWI	ACGGA	1 cut(s)	1033
TspRI	CASTG	5 cut(s)	715, 723, 874, 961, 1210
VpaK11BI	GGWCC	3 cut(s)	165, 218, 343
VspI	ATTAAT	1 cut(s)	27
XapI	RAATTY	3 cut(s)	567, 804, 1124
XceI	RCATGY	1 cut(s)	898
XmiI	GTMKAC	1 cut(s)	875
XspI	CTAG	2 cut(s)	863, 942
ZrmI	AGTACT	1 cut(s)	395
Zsp2I	ATGCAT	1 cut(s)	1063

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.