RchiOBHm_Chr6g0296511

Amino acid permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001778
Physical Location & Seq
Forward (+)
58284809 .. 58286912
2104 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26615

Sequence Viewer

Length: 1455 bp
ATGGTGGACAACACTGCTTCAAGGAACCATGTTCATTCCAACCCAGCTTTTGATGCCTCAGTTATGGATGGAGGCTCCAAGTTCTTTGATGATGATGGCCGTCCCAAAAGGACTGGAAATGTTATGACTGCAAGCGCTCACATAATTACTGCAGTGATTGGTTCTGGGGTTTTGTCATTGGCTTGGGCCATTGCTCAGCTTGGCTGGGTTGTTGGTCCTGTTGTGATGGTCATGTTTTCCTTAGTGACCTACTACACTTCATGTCTTCTCGTTGCCTGCTATCGTGACCCGGTCACTGGAAAAAGAAACTCTACTTACTCGGCTGCTGTTCGAAACCATCTTGGTGGACTTAAGTACAAAGTTCTTGGAATAGTTCAGCGCGTGAACCTTTTCGGAATCACCATTGGCTACACCATAACAGCATGTATAAGCATGGTTGCAATACAAAGGAATTCCTGCTTGCACAAGAGTGGTGGAGAAAAACCATGCCCGGTAAACAGCAATCCCTATATGATTGCTTTTGGCATCACAGAAATTATATTATCTCAAATTCCAAATTTCGATAAGTTGTGGTGGCTATCTACTGTTGCTGCAGTCATGTCATTTACATACTCAGGGATTGGACTTGTCCTTGGAATTGCTAAAGTTGCAGAAAGTGGAACAATGAAGGGAACTCTTACTGGAGTACGCATTGGAATTCATGTGACTCAAACCGAAAAGATATGGAGGATCTTCCAGGCACTTGGTGACATAGCTTTTGCTTACTCATTTGCTATCGTCCTCATTGAAATTGAGGACACAGTTAAATCTCCACCATCAGAAGCCAAGACAATGAAGACGGCCAGTAAAATTAGTTTAGCAGTCACATCCGTTTTCTACATTTTGTGTGGTTGCTTCGGTTATGCTGGTTTCGGAGATTTAGCCCCCGGAAACCTCCTCACCGGTAAAGGCCTCGGAGATTTAGCCCCATATTGGGTCATTGACTTGGCCAATGCTGCCATAGTTGTCCATCTTGTTGGAGCATACCAAGTCTTCAGCCAGCCCCTTTACGCATTCGTTGAGAAAAAAGCAGCACAGCTTTTCCCAGATAGCCACTTCATTTCAAAAGAAATCCAAATCCCCATCCCTTGTTTCAAGCCTTACAAGCTTAACCTTTTTAGACTGGTCTGGAGGACACTTTATGTGACGGCAACCACTTTGTTATCGATGGTCTTCCCGTTCTTCAACGGCGTGGTTGGATTTCTTGGGGCTTTGGGGTACTGGCCAATGACAATTTACTTCCCTGTGGAGATGTACATTGCTCAAAAGAAGATACCAAAGTGGAGCACAAGATGGCTTTGCCTCCAAACTCTAAGTCTTTCTGTGCTAATTATAGCTTTACTAGCAGCTGTTGGCTCGATTGCCGGTGTGATTGAAAGTCTCAAAGATTACAAGCCATTCAAGACCAGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

484

Amino Acids

52.71

Weight (kDa)

9.26

Isoelectric Point (pI)

29.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 38 - 471 3.6e-113 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 381
AclWI GGATC 1 cut(s) 737
AcoI YGGCCR 4 cut(s) 97, 840, 987, 1262
AcsI RAATTY 4 cut(s) 451, 549, 556, 696
AcuI CTGAAG 1 cut(s) 1018
AdeI CACNNNGTG 1 cut(s) 746
AfaI GTAC 4 cut(s) 356, 687, 1259, 1295
AfeI AGCGCT 1 cut(s) 136
AfiI CCNNNNNNNGG 3 cut(s) 296, 972, 973
AflII CTTAAG 1 cut(s) 350
AgeI ACCGGT 1 cut(s) 941
AgsI TTSAA 7 cut(s) 21, 788, 1104, 1135, 1225, 1415, 1441
AjnI CCWGG 1 cut(s) 735
AleI CACNNNNGTG 1 cut(s) 468
AluBI AGCT 8 cut(s) 47, 199, 755, 1078, 1147, 1376, 1388, 1449
AluI AGCT 8 cut(s) 47, 199, 755, 1078, 1147, 1376, 1388, 1449
Alw21I GWGCWC 1 cut(s) 1328
Alw26I GTCTC 1 cut(s) 1424
AlwI GGATC 1 cut(s) 737
Aor51HI AGCGCT 1 cut(s) 136
AoxI GGCC 6 cut(s) 97, 186, 840, 949, 987, 1262
ApeKI GCWGC 5 cut(s) 323, 590, 995, 1070, 1385
ApoI RAATTY 4 cut(s) 451, 549, 556, 696
ArsI GACNNNNNNTTYG 4 cut(s) 740, 772, 1339, 1371
AsiGI ACCGGT 1 cut(s) 941
Asp700I GAANNNNTTC 1 cut(s) 389
AspLEI GCGC 2 cut(s) 137, 381
AspS9I GGNCC 2 cut(s) 186, 215
AsuC2I CCSGG 3 cut(s) 290, 491, 927
AsuHPI GGTGA 3 cut(s) 391, 758, 931
AsuII TTCGAA 1 cut(s) 331
AvaII GGWCC 1 cut(s) 215
BaeI ACNNNNGTAYC 2 cut(s) 1304, 1337
BalI TGGCCA 2 cut(s) 989, 1264
BbsI GAAGAC 4 cut(s) 257, 842, 1024, 1204
Bbv12I GWGCWC 1 cut(s) 1328
BbvI GCAGC 5 cut(s) 310, 577, 982, 1082, 1397
BccI CCATC 9 cut(s) 62, 89, 220, 345, 823, 1017, 1130, 1201, 1326
BceAI ACGGC 4 cut(s) 84, 855, 1203, 1243
BciT130I CCWGG 1 cut(s) 737
BcnI CCSGG 3 cut(s) 290, 491, 927
BcoDI GTCTC 1 cut(s) 1424
BfaI CTAG 1 cut(s) 1382
BfmI CTRYAG 2 cut(s) 150, 591
BfoI RGCGCY 1 cut(s) 138
BfrI CTTAAG 1 cut(s) 350
BisI GCNGC 5 cut(s) 324, 591, 996, 1071, 1386
BlpI GCTNAGC 1 cut(s) 195
BlsI GCNGC 5 cut(s) 325, 592, 997, 1072, 1387
Bme1390I CCNGG 4 cut(s) 290, 491, 737, 927
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 2 cut(s) 186, 215
BmiI GGNNCC 2 cut(s) 26, 76
BmrFI CCNGG 4 cut(s) 290, 491, 737, 927
BmsI GCATC 2 cut(s) 43, 534
BpiI GAAGAC 4 cut(s) 257, 842, 1024, 1204
BpmI CTGGAG 2 cut(s) 702, 1189
Bpu1102I GCTNAGC 1 cut(s) 195
Bpu14I TTCGAA 1 cut(s) 331
BpuMI CCSGG 3 cut(s) 290, 491, 927
Bsa29I ATCGAT 1 cut(s) 1205
BsaJI CCNNGG 3 cut(s) 631, 925, 952
BsaWI WCCGGW 1 cut(s) 941
Bsc4I CCNNNNNNNGG 3 cut(s) 296, 972, 973
Bse118I RCCGGY 2 cut(s) 941, 1403
Bse1I ACTGG 6 cut(s) 118, 301, 685, 843, 1167, 1265
Bse3DI GCAATG 2 cut(s) 189, 1296
BseBI CCWGG 1 cut(s) 737
BseCI ATCGAT 1 cut(s) 1205
BseDI CCNNGG 3 cut(s) 631, 925, 952
BseGI GGATG 3 cut(s) 73, 866, 1122
BseLI CCNNNNNNNGG 3 cut(s) 296, 972, 973
BseMI GCAATG 2 cut(s) 189, 1296
BseMII CTCAG 3 cut(s) 72, 209, 627
BseNI ACTGG 6 cut(s) 118, 301, 685, 843, 1167, 1265
BseRI GAGGAG 1 cut(s) 926
BseXI GCAGC 5 cut(s) 310, 577, 982, 1082, 1397
BseYI CCCAGC 2 cut(s) 43, 204
Bsh1236I CGCG 1 cut(s) 381
BshFI GGCC 6 cut(s) 99, 188, 842, 951, 989, 1264
BshTI ACCGGT 1 cut(s) 941
BshVI ATCGAT 1 cut(s) 1205
BsiHKAI GWGCWC 1 cut(s) 1328
BsiSI CCGG 5 cut(s) 290, 491, 927, 942, 1404
BslFI GGGAC 1 cut(s) 87
BslI CCNNNNNNNGG 3 cut(s) 296, 972, 973
BsmAI GTCTC 1 cut(s) 1424
BsmFI GGGAC 1 cut(s) 87
BsmI GAATGC 1 cut(s) 1052
BsnI GGCC 6 cut(s) 99, 188, 842, 951, 989, 1264
Bsp119I TTCGAA 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 1328
Bsp1407I TGTACA 1 cut(s) 1293
Bsp143I GATC 1 cut(s) 729
Bsp1720I GCTNAGC 1 cut(s) 195
BspANI GGCC 6 cut(s) 99, 188, 842, 951, 989, 1264
BspCNI CTCAG 3 cut(s) 71, 208, 626
BspDI ATCGAT 1 cut(s) 1205
BspFNI CGCG 1 cut(s) 381
BspLI GGNNCC 2 cut(s) 26, 76
BspMAI CTGCAG 2 cut(s) 154, 595
BspPI GGATC 1 cut(s) 737
BspT104I TTCGAA 1 cut(s) 331
BspTI CTTAAG 1 cut(s) 350
BsrDI GCAATG 2 cut(s) 189, 1296
BsrFI RCCGGY 2 cut(s) 941, 1403
BsrGI TGTACA 1 cut(s) 1293
BsrI ACTGG 6 cut(s) 118, 301, 685, 843, 1167, 1265
BssAI RCCGGY 2 cut(s) 941, 1403
BssECI CCNNGG 3 cut(s) 631, 925, 952
BssMI GATC 1 cut(s) 729
BssT1I CCWWGG 1 cut(s) 631
Bst2UI CCWGG 1 cut(s) 737
Bst4CI ACNGT 2 cut(s) 586, 802
BstAFI CTTAAG 1 cut(s) 350
BstAUI TGTACA 1 cut(s) 1293
BstBI TTCGAA 1 cut(s) 331
BstC8I GCNNGC 4 cut(s) 133, 277, 461, 1040
BstDEI CTNAG 5 cut(s) 58, 195, 241, 613, 1352
BstF5I GGATG 3 cut(s) 73, 866, 1122
BstFNI CGCG 1 cut(s) 381
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 2 cut(s) 137, 381
BstKTI GATC 1 cut(s) 732
BstMAI GTCTC 1 cut(s) 1424
BstMBI GATC 1 cut(s) 729
BstMWI GCNNNNNNNGC 5 cut(s) 53, 647, 995, 1144, 1382
BstNI CCWGG 1 cut(s) 737
BstNSI RCATGY 1 cut(s) 426
BstSCI CCNGG 4 cut(s) 288, 489, 735, 925
BstSFI CTRYAG 2 cut(s) 150, 591
BstUI CGCG 1 cut(s) 381
BstV1I GCAGC 5 cut(s) 310, 577, 982, 1082, 1397
BstV2I GAAGAC 4 cut(s) 257, 842, 1024, 1204
BstX2I RGATCY 1 cut(s) 729
BstXI CCANNNNNNTGG 3 cut(s) 344, 743, 1016
BstYI RGATCY 1 cut(s) 729
Bsu15I ATCGAT 1 cut(s) 1205
BsuRI GGCC 6 cut(s) 99, 188, 842, 951, 989, 1264
BsuTUI ATCGAT 1 cut(s) 1205
BtsCI GGATG 3 cut(s) 73, 866, 1122
BtsI GCAGTG 2 cut(s) 12, 159
BtsIMutI CAGTG 3 cut(s) 12, 159, 294
Cac8I GCNNGC 4 cut(s) 133, 277, 461, 1040
CfoI GCGC 2 cut(s) 137, 381
Cfr10I RCCGGY 2 cut(s) 941, 1403
Cfr13I GGNCC 2 cut(s) 186, 215
ClaI ATCGAT 1 cut(s) 1205
Csp6I GTAC 4 cut(s) 355, 686, 1258, 1294
CspAI ACCGGT 1 cut(s) 941
CspCI CAANNNNNGTGG 2 cut(s) 454, 489
CviAII CATG 8 cut(s) 29, 232, 261, 423, 433, 486, 598, 701
CviQI GTAC 4 cut(s) 355, 686, 1258, 1294
DdeI CTNAG 5 cut(s) 58, 195, 241, 613, 1352
DpnI GATC 1 cut(s) 731
DpnII GATC 1 cut(s) 729
DraIII CACNNNGTG 1 cut(s) 746
EaeI YGGCCR 4 cut(s) 97, 840, 987, 1262
Eco130I CCWWGG 1 cut(s) 631
Eco147I AGGCCT 1 cut(s) 951
Eco47I GGWCC 1 cut(s) 215
Eco47III AGCGCT 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 1018
EcoRI GAATTC 2 cut(s) 451, 696
EcoRII CCWGG 1 cut(s) 735
EcoT14I CCWWGG 1 cut(s) 631
ErhI CCWWGG 1 cut(s) 631
FaeI CATG 8 cut(s) 32, 235, 264, 426, 436, 489, 601, 704
FaqI GGGAC 1 cut(s) 87
FatI CATG 8 cut(s) 28, 231, 260, 422, 432, 485, 597, 700
Fnu4HI GCNGC 5 cut(s) 324, 591, 996, 1071, 1386
FokI GGATG 3 cut(s) 80, 853, 1109
Fsp4HI GCNGC 5 cut(s) 324, 591, 996, 1071, 1386
FspBI CTAG 1 cut(s) 1382
GlaI GCGC 2 cut(s) 136, 380
GluI GCNGC 5 cut(s) 324, 591, 996, 1071, 1386
GsaI CCCAGC 2 cut(s) 47, 208
GsuI CTGGAG 2 cut(s) 702, 1189
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 6 cut(s) 99, 188, 842, 951, 989, 1264
HapII CCGG 5 cut(s) 290, 491, 927, 942, 1404
HhaI GCGC 2 cut(s) 137, 381
Hin1II CATG 8 cut(s) 32, 235, 264, 426, 436, 489, 601, 704
Hin6I GCGC 2 cut(s) 135, 379
HinP1I GCGC 2 cut(s) 135, 379
HindIII AAGCTT 1 cut(s) 1145
HinfI GANTC 2 cut(s) 396, 706
HpaII CCGG 5 cut(s) 290, 491, 927, 942, 1404
HphI GGTGA 3 cut(s) 391, 758, 931
Hpy166II GTNNAC 4 cut(s) 7, 347, 385, 496
Hpy188I TCNGA 4 cut(s) 395, 820, 914, 956
Hpy188III TCNNGA 4 cut(s) 284, 1168, 1441, 1452
Hpy8I GTNNAC 4 cut(s) 7, 347, 385, 496
HpyAV CCTTC 1 cut(s) 661
HpyCH4III ACNGT 2 cut(s) 586, 802
HpyCH4V TGCA 6 cut(s) 131, 152, 440, 463, 593, 650
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 647, 995, 1144, 1382
HpyF3I CTNAG 5 cut(s) 58, 195, 241, 613, 1352
Hsp92II CATG 8 cut(s) 32, 235, 264, 426, 436, 489, 601, 704
HspAI GCGC 2 cut(s) 135, 379
Kzo9I GATC 1 cut(s) 729
LmnI GCTCC 3 cut(s) 80, 1019, 1323
Lsp1109I GCAGC 5 cut(s) 310, 577, 982, 1082, 1397
LweI GCATC 2 cut(s) 43, 534
MaeI CTAG 1 cut(s) 1382
MaeIII GTNAC 7 cut(s) 244, 284, 292, 703, 746, 862, 1183
MalI GATC 1 cut(s) 731
MboI GATC 1 cut(s) 729
MboII GAAGA 7 cut(s) 257, 724, 847, 1024, 1204, 1213, 1321
MflI RGATCY 1 cut(s) 729
MhlI GDGCHC 1 cut(s) 1328
MlsI TGGCCA 2 cut(s) 989, 1264
MluNI TGGCCA 2 cut(s) 989, 1264
MlyI GAGTC 1 cut(s) 700
MmeI TCCRAC 3 cut(s) 63, 997, 1216
Mox20I TGGCCA 2 cut(s) 989, 1264
MroXI GAANNNNTTC 1 cut(s) 389
MscI TGGCCA 2 cut(s) 989, 1264
MseI TTAA 3 cut(s) 351, 804, 1149
MslI CAYNNNNRTG 2 cut(s) 342, 468
Msp20I TGGCCA 2 cut(s) 989, 1264
MspA1I CMGCKG 1 cut(s) 1388
MspCI CTTAAG 1 cut(s) 350
MspI CCGG 5 cut(s) 290, 491, 927, 942, 1404
MspR9I CCNGG 4 cut(s) 290, 491, 737, 927
Mva1269I GAATGC 1 cut(s) 1052
MvaI CCWGG 1 cut(s) 737
MvnI CGCG 1 cut(s) 381
MwoI GCNNNNNNNGC 5 cut(s) 53, 647, 995, 1144, 1382
NciI CCSGG 3 cut(s) 290, 491, 927
NdeII GATC 1 cut(s) 729
NlaIII CATG 8 cut(s) 32, 235, 264, 426, 436, 489, 601, 704
NlaIV GGNNCC 2 cut(s) 26, 76
NmeAIII GCCGAG 1 cut(s) 299
NmuCI GTSAC 7 cut(s) 244, 284, 292, 703, 746, 862, 1183
NspI RCATGY 1 cut(s) 426
NspV TTCGAA 1 cut(s) 331
OliI CACNNNNGTG 1 cut(s) 468
PceI AGGCCT 1 cut(s) 951
PctI GAATGC 1 cut(s) 1052
PdmI GAANNNNTTC 1 cut(s) 389
PfeI GAWTC 1 cut(s) 396
PflFI GACNNNGTC 1 cut(s) 290
PinAI ACCGGT 1 cut(s) 941
PkrI GCNGC 5 cut(s) 325, 592, 997, 1072, 1387
PleI GAGTC 1 cut(s) 700
PpsI GAGTC 1 cut(s) 700
Psp6I CCWGG 1 cut(s) 735
PspFI CCCAGC 2 cut(s) 43, 204
PspGI CCWGG 1 cut(s) 735
PspN4I GGNNCC 2 cut(s) 26, 76
PspPI GGNCC 2 cut(s) 186, 215
PstI CTGCAG 2 cut(s) 154, 595
PsuI RGATCY 1 cut(s) 729
PsyI GACNNNGTC 1 cut(s) 290
PvuII CAGCTG 1 cut(s) 1388
RsaI GTAC 4 cut(s) 356, 687, 1259, 1295
RsaNI GTAC 4 cut(s) 355, 686, 1258, 1294
RseI CAYNNNNRTG 2 cut(s) 342, 468
SaqAI TTAA 3 cut(s) 351, 804, 1149
SatI GCNGC 5 cut(s) 324, 591, 996, 1071, 1386
Sau3AI GATC 1 cut(s) 729
Sau96I GGNCC 2 cut(s) 186, 215
SchI GAGTC 1 cut(s) 700
ScrFI CCNGG 4 cut(s) 290, 491, 737, 927
SduI GDGCHC 1 cut(s) 1328
SfaNI GCATC 2 cut(s) 43, 534
SfcI CTRYAG 2 cut(s) 150, 591
SfuI TTCGAA 1 cut(s) 331
SinI GGWCC 1 cut(s) 215
SmiMI CAYNNNNRTG 2 cut(s) 342, 468
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
SseBI AGGCCT 1 cut(s) 951
SspMI CTAG 1 cut(s) 1382
StuI AGGCCT 1 cut(s) 951
StyD4I CCNGG 4 cut(s) 288, 489, 735, 925
StyI CCWWGG 1 cut(s) 631
TaaI ACNGT 2 cut(s) 586, 802
TaqI TCGA 4 cut(s) 331, 561, 1205, 1397
TatI WGTACW 2 cut(s) 354, 1293
TfiI GAWTC 1 cut(s) 396
Tru1I TTAA 3 cut(s) 351, 804, 1149
Tru9I TTAA 3 cut(s) 351, 804, 1149
TscAI CASTG 3 cut(s) 19, 159, 301
TseFI GTSAC 7 cut(s) 244, 284, 292, 703, 746, 862, 1183
TseI GCWGC 5 cut(s) 323, 590, 995, 1070, 1385
Tsp45I GTSAC 7 cut(s) 244, 284, 292, 703, 746, 862, 1183
TspDTI ATGAA 6 cut(s) 23, 249, 680, 689, 848, 1087
TspGWI ACGGA 1 cut(s) 859
TspRI CASTG 3 cut(s) 19, 159, 301
Tth111I GACNNNGTC 1 cut(s) 290
Vha464I CTTAAG 1 cut(s) 350
VpaK11BI GGWCC 1 cut(s) 215
XapI RAATTY 4 cut(s) 451, 549, 556, 696
XceI RCATGY 1 cut(s) 426
XmnI GAANNNNTTC 1 cut(s) 389
XspI CTAG 1 cut(s) 1382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.