Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001778

Physical Location & Seq

Genomic Coordinates Reverse (-)

11690420 .. 11691043

Gene Structure 624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011686

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAAGACGGCCAGTAAAATTAGTTTAGCACTCACATCCGTCTTCTACATTTTGTGTGGTTGCTTCGGTTATGCTGGTTTCGGAGATTTAACCCCCGGAAACCTCCTCACCGGTAAAGGCTTCGGAGATTTAGCCCCATATTGGGTCATTGACTTGGCCAATGCCGCCATAGTTGTCCATCTTGTTGGAGCATACCAAGTCTTCAGCCAGCCCATTTACGCATTCGTTGAGAAAAAAGCAGCACAGCTTTTCCCAGATAGTCACTTCATCGCAAAAGAAATCCAAATCCCCATCCCTTGTTTCAAGCCTTACAAGCTTAACCTTTTTAGACTGGTCTGGAGGACACTTTATGTGACTGCAACCACGGTGTTATCGATGGTCTTCCCGTTCTTCAACGGCGTGGTTGGATTTCTTGGGGCTTTGGGGTACTGGCCAATGACAATTTACTTCCCTGTGGAGATGTACATTGCTCAAAAGAAGATACCAAAGTGGAGCACAAGATGGCTTTGCCTCCAAACTCTAAGTCTTTCTGTGCTAATTATAGCTTTACTAGCAGCTGTTGGCTCGATTGCCGGTGTGATTGAAAGTCTCAAAGATTACAAGCCATTCAAGACCAGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

208

Amino Acids

22.93

Weight (kDa)

9.32

Isoelectric Point (pI)

22.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	1 - 194	5.7e-46	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10010 AT1G10010 AT1G58360
fragaria_vesca	FvH4_2g27660 FvH4_2g27660 FvH4_2g27660 FvH4_2g27660 FvH4_2g27661 FvH4_2g27661 FvH4_5g12780
malus_domestica	MD00G1140000.v1.1 MD08G1158200.v1.1 MD15G1343500.v1.1 MD15G1343600.v1.1 MD15G1343900.v1.1
prunus_persica	Prupe.1G491000_v2.0.a1 Prupe.1G491000_v2.0.a1 Prupe.1G491000_v2.0.a1 Prupe.1G491100_v2.0.a1 Prupe.1G491200_v2.0.a1 Prupe.1G491300_v2.0.a1
pyrus_communis	pycom08g05160 pycom12419g00300 pycom15g30720
rosa_chinensis	RchiOBHm_Chr6g0296481 RchiOBHm_Chr6g0296511
rosa_laevigata	RLG00000011686 RLG00000011687 RLG00000011688
rosa_multiflora	Rmu_sc0001146.1_g000005 Rmu_sc0004318.1_g000010 Rmu_sc0006174.1_g000011
rosa_roxburghii	Rroxscaffold_7G00171480 Rroxscaffold_7G00171490 Rroxscaffold_7G00178640 Rroxscaffold_7G00178650
rosa_rugosa	Rorug06G0262800
rosa_samantha	Rh6AG374100 Rh6AG374300 Rh6BG382700 Rh6BG382800 Rh6CG387500 Rh6CG387800 Rh6DG375300 Rh6DG375500
rosa_wichuraiana	Rw6G032630 Rw6G032640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	165
AcoI	YGGCCR	3 cut(s)	9, 156, 431
AcuI	CTGAAG	1 cut(s)	187
AfaI	GTAC	2 cut(s)	428, 464
AfiI	CCNNNNNNNGG	2 cut(s)	141, 142
AgeI	ACCGGT	1 cut(s)	110
AgsI	TTSAA	4 cut(s)	304, 394, 584, 610
AluBI	AGCT	5 cut(s)	247, 316, 545, 557, 618
AluI	AGCT	5 cut(s)	247, 316, 545, 557, 618
Alw21I	GWGCWC	1 cut(s)	497
Alw26I	GTCTC	1 cut(s)	593
AoxI	GGCC	3 cut(s)	9, 156, 431
ApeKI	GCWGC	2 cut(s)	239, 554
ArsI	GACNNNNNNTTYG	2 cut(s)	508, 540
AsiGI	ACCGGT	1 cut(s)	110
AsuC2I	CCSGG	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	100
BaeI	ACNNNNGTAYC	2 cut(s)	473, 506
BalI	TGGCCA	2 cut(s)	158, 433
BbsI	GAAGAC	4 cut(s)	11, 34, 193, 373
Bbv12I	GWGCWC	1 cut(s)	497
BbvI	GCAGC	2 cut(s)	251, 566
BccI	CCATC	4 cut(s)	186, 299, 370, 495
BceAI	ACGGC	2 cut(s)	24, 412
BcnI	CCSGG	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	593
BfaI	CTAG	1 cut(s)	551
BisI	GCNGC	3 cut(s)	165, 240, 555
BlsI	GCNGC	3 cut(s)	166, 241, 556
Bme1390I	CCNGG	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	96
BpiI	GAAGAC	4 cut(s)	11, 34, 193, 373
BpmI	CTGGAG	1 cut(s)	358
BpuMI	CCSGG	1 cut(s)	96
Bsa29I	ATCGAT	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	94, 363
BsaWI	WCCGGW	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 142
Bse118I	RCCGGY	2 cut(s)	110, 572
Bse1I	ACTGG	3 cut(s)	12, 336, 434
Bse3DI	GCAATG	1 cut(s)	465
BseCI	ATCGAT	1 cut(s)	374
BseDI	CCNNGG	2 cut(s)	94, 363
BseGI	GGATG	2 cut(s)	35, 291
BseLI	CCNNNNNNNGG	2 cut(s)	141, 142
BseMI	GCAATG	1 cut(s)	465
BseNI	ACTGG	3 cut(s)	12, 336, 434
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	2 cut(s)	251, 566
BshFI	GGCC	3 cut(s)	11, 158, 433
BshTI	ACCGGT	1 cut(s)	110
BshVI	ATCGAT	1 cut(s)	374
BsiHKAI	GWGCWC	1 cut(s)	497
BsiSI	CCGG	3 cut(s)	96, 111, 573
BslI	CCNNNNNNNGG	2 cut(s)	141, 142
BsmAI	GTCTC	1 cut(s)	593
BsmI	GAATGC	1 cut(s)	221
BsnI	GGCC	3 cut(s)	11, 158, 433
Bsp1286I	GDGCHC	1 cut(s)	497
Bsp1407I	TGTACA	1 cut(s)	462
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	3 cut(s)	11, 158, 433
BspDI	ATCGAT	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	465
BsrFI	RCCGGY	2 cut(s)	110, 572
BsrGI	TGTACA	1 cut(s)	462
BsrI	ACTGG	3 cut(s)	12, 336, 434
BssAI	RCCGGY	2 cut(s)	110, 572
BssECI	CCNNGG	2 cut(s)	94, 363
Bst4CI	ACNGT	1 cut(s)	367
BstAUI	TGTACA	1 cut(s)	462
BstC8I	GCNNGC	1 cut(s)	209
BstDEI	CTNAG	1 cut(s)	521
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	2 cut(s)	35, 291
BstMAI	GTCTC	1 cut(s)	593
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 313, 551
BstSCI	CCNGG	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	251, 566
BstV2I	GAAGAC	4 cut(s)	11, 34, 193, 373
BstXI	CCANNNNNNTGG	1 cut(s)	185
Bsu15I	ATCGAT	1 cut(s)	374
BsuRI	GGCC	3 cut(s)	11, 158, 433
BsuTUI	ATCGAT	1 cut(s)	374
BtgI	CCRYGG	1 cut(s)	363
BtgZI	GCGATG	1 cut(s)	253
BtsCI	GGATG	2 cut(s)	35, 291
Cac8I	GCNNGC	1 cut(s)	209
Cfr10I	RCCGGY	2 cut(s)	110, 572
ClaI	ATCGAT	1 cut(s)	374
Csp6I	GTAC	2 cut(s)	427, 463
CspAI	ACCGGT	1 cut(s)	110
CviQI	GTAC	2 cut(s)	427, 463
DdeI	CTNAG	1 cut(s)	521
EaeI	YGGCCR	3 cut(s)	9, 156, 431
Eco57I	CTGAAG	1 cut(s)	187
FaiI	YATR	6 cut(s)	72, 139, 170, 193, 351, 542
Fnu4HI	GCNGC	3 cut(s)	165, 240, 555
FokI	GGATG	2 cut(s)	22, 278
Fsp4HI	GCNGC	3 cut(s)	165, 240, 555
FspBI	CTAG	1 cut(s)	551
GluI	GCNGC	3 cut(s)	165, 240, 555
GsuI	CTGGAG	1 cut(s)	358
HaeIII	GGCC	3 cut(s)	11, 158, 433
HapII	CCGG	3 cut(s)	96, 111, 573
HindIII	AAGCTT	1 cut(s)	314
HpaII	CCGG	3 cut(s)	96, 111, 573
HphI	GGTGA	1 cut(s)	100
Hpy188I	TCNGA	2 cut(s)	83, 125
Hpy188III	TCNNGA	3 cut(s)	337, 610, 621
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	1 cut(s)	359
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 313, 551
HpyF3I	CTNAG	1 cut(s)	521
LmnI	GCTCC	2 cut(s)	188, 492
Lsp1109I	GCAGC	2 cut(s)	251, 566
MaeI	CTAG	1 cut(s)	551
MaeIII	GTNAC	2 cut(s)	260, 352
MboII	GAAGA	6 cut(s)	16, 34, 193, 373, 382, 490
MhlI	GDGCHC	1 cut(s)	497
MlsI	TGGCCA	2 cut(s)	158, 433
MluCI	AATT	3 cut(s)	18, 441, 537
MluNI	TGGCCA	2 cut(s)	158, 433
MmeI	TCCRAC	2 cut(s)	166, 385
MnlI	CCTC	4 cut(s)	113, 116, 333, 521
Mox20I	TGGCCA	2 cut(s)	158, 433
MscI	TGGCCA	2 cut(s)	158, 433
MseI	TTAA	2 cut(s)	89, 318
Msp20I	TGGCCA	2 cut(s)	158, 433
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	3 cut(s)	96, 111, 573
MspR9I	CCNGG	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	221
MwoI	GCNNNNNNNGC	3 cut(s)	164, 313, 551
NciI	CCSGG	1 cut(s)	96
NmuCI	GTSAC	2 cut(s)	260, 352
PcsI	WCGNNNNNNNCGW	1 cut(s)	371
PctI	GAATGC	1 cut(s)	221
PinAI	ACCGGT	1 cut(s)	110
PkrI	GCNGC	3 cut(s)	166, 241, 556
PvuII	CAGCTG	1 cut(s)	557
RsaI	GTAC	2 cut(s)	428, 464
RsaNI	GTAC	2 cut(s)	427, 463
SaqAI	TTAA	2 cut(s)	89, 318
SatI	GCNGC	3 cut(s)	165, 240, 555
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	1 cut(s)	497
SetI	ASST	7 cut(s)	105, 249, 318, 324, 547, 559, 620
Sse9I	AATT	3 cut(s)	18, 441, 537
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	551
StyD4I	CCNGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	367
TaqI	TCGA	2 cut(s)	374, 566
TasI	AATT	3 cut(s)	18, 441, 537
TatI	WGTACW	1 cut(s)	462
TauI	GCSGC	1 cut(s)	167
Tru1I	TTAA	2 cut(s)	89, 318
Tru9I	TTAA	2 cut(s)	89, 318
TseFI	GTSAC	2 cut(s)	260, 352
TseI	GCWGC	2 cut(s)	239, 554
Tsp45I	GTSAC	2 cut(s)	260, 352
TspDTI	ATGAA	2 cut(s)	17, 256
TspGWI	ACGGA	1 cut(s)	28
XspI	CTAG	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.