AT1G58360

amino acid permease 1

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
21676388 .. 21680519
4132 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G58360.1

Sequence Viewer

Length: 1458 bp
ATGAAGAGTTTCAACACAGAAGGACACAACCACTCCACGGCGGAATCCGGCGATGCCTACACCGTGTCGGACCCGACAAAGAACGTCGATGAAGATGGTCGAGAGAAGCGTACCGGGACGTGGCTTACGGCGAGTGCGCATATTATCACGGCGGTGATAGGCTCCGGAGTGTTGTCTTTAGCATGGGCTATAGCTCAGCTTGGTTGGATCGCAGGGACATCGATCTTACTCATTTTCTCGTTCATTACTTACTTCACCTCCACCATGCTTGCCGATTGCTACCGTGCGCCGGATCCCGTCACCGGAAAACGGAATTACACTTACATGGACGTTGTTCGATCTTACCTCGGTGGTAGGAAAGTGCAGCTCTGTGGAGTGGCACAATATGGGAATCTGATTGGGGTCACTGTTGGTTACACCATCACTGCTTCTATTAGTTTGGTAGCGGTAGGGAAATCGAACTGCTTCCACGATAAAGGGCACACTGCGGATTGTACTATATCGAATTATCCGTATATGGCGGTTTTTGGCATTATTCAGGTTATTCTTAGCCAGATCCCAAATTTCCACAAGCTCTCTTTTCTTTCCATTATGGCCGCGGTCATGTCCTTTACTTATGCAACTATTGGAATCGGTCTAGCCATCGCAACCGTCGCAGGTGGGAAAGTGGGTAAGACGAGTATGACGGGCACAGCGGTTGGAGTAGATGTAACCGCAGCTCAAAAGATATGGAGATCGTTTCAAGCGGTTGGGGACATAGCGTTCGCCTATGCTTATGCCACGGTTCTCATCGAGATTCAGGATACACTAAGATCTAGCCCAGCTGAGAACAAAGCCATGAAAAGAGCAAGTCTTGTGGGAGTATCAACCACCACTTTTTTCTACATCTTATGTGGATGCATCGGCTATGCTGCATTTGGAAACAATGCCCCTGGAGATTTCCTCACAGATTTCGGGTTTTTCGAGCCCTTTTGGCTCATTGACTTTGCAAACGCTTGCATCGCTGTCCACCTTATTGGTGCCTATCAGGTGTTCGCGCAGCCGATATTCCAGTTTGTTGAGAAAAAATGCAACAGAAACTATCCAGACAACAAGTTCATCACTTCTGAATATTCAGTAAACGTACCTTTCCTTGGAAAATTCAACATTAGCCTCTTCAGATTGGTGTGGAGGACAGCTTATGTGGTTATAACCACTGTTGTAGCTATGATATTCCCTTTCTTCAACGCGATCTTAGGTCTTATCGGAGCAGCTTCCTTCTGGCCTTTAACGGTTTATTTCCCTGTGGAGATGCACATTGCACAAACCAAGATTAAGAAGTACTCTGCTAGATGGATTGCGCTGAAAACGATGTGCTATGTTTGCTTGATCGTCTCGCTCTTAGCTGCAGCCGGATCCATCGCAGGACTTATAAGTAGTGTCAAAACCTACAAGCCCTTCCGGACTATGCATGAGTGA

Protein Analysis

485

Amino Acids

52.89

Weight (kDa)

8.99

Isoelectric Point (pI)

33.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 37 - 471 9.2e-132 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1190, 1412
AarI CACCTGC 1 cut(s) 647
Acc16I TGCGCA 1 cut(s) 138
Acc36I ACCTGC 1 cut(s) 647
AccB1I GGYRCC 1 cut(s) 1019
AccII CGCG 3 cut(s) 599, 1037, 1229
AccIII TCCGGA 2 cut(s) 164, 1440
AclWI GGATC 6 cut(s) 215, 287, 300, 550, 1389, 1402
AcoI YGGCCR 1 cut(s) 594
AcsI RAATTY 2 cut(s) 562, 1139
AcuI CTGAAG 1 cut(s) 1141
AfaI GTAC 4 cut(s) 112, 496, 1125, 1322
AfiI CCNNNNNNNGG 6 cut(s) 37, 120, 289, 302, 309, 1133
AgsI TTSAA 4 cut(s) 13, 743, 1144, 1225
AjiI CACGTC 1 cut(s) 120
AjnI CCWGG 1 cut(s) 931
AleI CACNNNNGTG 1 cut(s) 152
AloI GAACNNNNNNTCC 2 cut(s) 746, 778
Alw26I GTCTC 1 cut(s) 1378
AlwI GGATC 6 cut(s) 215, 287, 300, 550, 1389, 1402
Aor13HI TCCGGA 2 cut(s) 164, 1440
AoxI GGCC 2 cut(s) 594, 1262
ApeKI GCWGC 7 cut(s) 364, 716, 911, 1039, 1250, 1385, 1388
ApoI RAATTY 2 cut(s) 562, 1139
ArsI GACNNNNNNTTYG 2 cut(s) 746, 778
Asp700I GAANNNNTTC 2 cut(s) 8, 464
AspLEI GCGC 4 cut(s) 139, 289, 1039, 1342
AspS9I GGNCC 1 cut(s) 70
AsuC2I CCSGG 1 cut(s) 115
AsuHPI GGTGA 3 cut(s) 166, 247, 292
AvaII GGWCC 1 cut(s) 70
BaeGI GKGCMC 2 cut(s) 483, 692
BamHI GGATCC 2 cut(s) 292, 1394
BanI GGYRCC 1 cut(s) 1019
BanII GRGCYC 1 cut(s) 969
BbvI GCAGC 7 cut(s) 376, 728, 898, 1051, 1262, 1372, 1400
BccI CCATC 5 cut(s) 89, 428, 650, 1326, 1406
BceAI ACGGC 3 cut(s) 54, 144, 165
BcgI CGANNNNNNTGC 2 cut(s) 201, 235
BciT130I CCWGG 1 cut(s) 933
BciVI GTATCC 1 cut(s) 796
BcnI CCSGG 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 1378
BfaI CTAG 3 cut(s) 638, 816, 1329
BfmI CTRYAG 2 cut(s) 189, 1386
BfuAI ACCTGC 1 cut(s) 647
BfuI GTATCC 1 cut(s) 796
BglI GCCNNNNNGGC 1 cut(s) 973
BglII AGATCT 1 cut(s) 812
BisI GCNGC 8 cut(s) 365, 597, 717, 912, 1040, 1251, 1386, 1389
BlpI GCTNAGC 1 cut(s) 195
BlsI GCNGC 8 cut(s) 366, 598, 718, 913, 1041, 1252, 1387, 1390
BmcAI AGTACT 1 cut(s) 1322
Bme1390I CCNGG 2 cut(s) 115, 933
Bme18I GGWCC 1 cut(s) 70
BmgBI CACGTC 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 5 cut(s) 72, 163, 294, 1021, 1396
BmrFI CCNGG 2 cut(s) 115, 933
BmsI GCATC 5 cut(s) 43, 887, 909, 1008, 1281
BplI GAGNNNNNCTC 2 cut(s) 927, 959
BpmI CTGGAG 1 cut(s) 954
Bpu1102I GCTNAGC 1 cut(s) 195
BpuMI CCSGG 1 cut(s) 115
Bsa29I ATCGAT 1 cut(s) 221
BsaJI CCNNGG 6 cut(s) 36, 346, 597, 780, 931, 1132
BsaWI WCCGGW 3 cut(s) 164, 302, 1440
BsaXI ACNNNNNCTCC 6 cut(s) 17, 47, 242, 272, 693, 723
Bsc4I CCNNNNNNNGG 6 cut(s) 37, 120, 289, 302, 309, 1133
Bse1I ACTGG 1 cut(s) 1051
Bse3DI GCAATG 1 cut(s) 1296
BseAI TCCGGA 2 cut(s) 164, 1440
BseBI CCWGG 1 cut(s) 933
BseCI ATCGAT 1 cut(s) 221
BseDI CCNNGG 6 cut(s) 36, 346, 597, 780, 931, 1132
BseGI GGATG 1 cut(s) 902
BseLI CCNNNNNNNGG 6 cut(s) 37, 120, 289, 302, 309, 1133
BseMI GCAATG 1 cut(s) 1296
BseMII CTCAG 2 cut(s) 209, 816
BseNI ACTGG 1 cut(s) 1051
BseSI GKGCMC 2 cut(s) 483, 692
BseXI GCAGC 7 cut(s) 376, 728, 898, 1051, 1262, 1372, 1400
BseYI CCCAGC 1 cut(s) 820
BsgI GTGCAG 1 cut(s) 383
Bsh1236I CGCG 3 cut(s) 599, 1037, 1229
BshFI GGCC 2 cut(s) 596, 1264
BshNI GGYRCC 1 cut(s) 1019
BshVI ATCGAT 1 cut(s) 221
BsiSI CCGG 7 cut(s) 48, 114, 165, 290, 303, 1392, 1441
BslFI GGGAC 3 cut(s) 130, 229, 767
BslI CCNNNNNNNGG 6 cut(s) 37, 120, 289, 302, 309, 1133
BsmAI GTCTC 1 cut(s) 1378
BsmBI CGTCTC 1 cut(s) 1378
BsmFI GGGAC 3 cut(s) 130, 229, 767
BsnI GGCC 2 cut(s) 596, 1264
Bsp1286I GDGCHC 3 cut(s) 483, 692, 969
Bsp13I TCCGGA 2 cut(s) 164, 1440
Bsp1720I GCTNAGC 1 cut(s) 195
BspANI GGCC 2 cut(s) 596, 1264
BspCNI CTCAG 2 cut(s) 208, 817
BspDI ATCGAT 1 cut(s) 221
BspEI TCCGGA 2 cut(s) 164, 1440
BspFNI CGCG 3 cut(s) 599, 1037, 1229
BspLI GGNNCC 5 cut(s) 72, 163, 294, 1021, 1396
BspMAI CTGCAG 1 cut(s) 1390
BspMI ACCTGC 1 cut(s) 647
BspPI GGATC 6 cut(s) 215, 287, 300, 550, 1389, 1402
BspT107I GGYRCC 1 cut(s) 1019
BsrDI GCAATG 1 cut(s) 1296
BsrI ACTGG 1 cut(s) 1051
BssECI CCNNGG 6 cut(s) 36, 346, 597, 780, 931, 1132
BssT1I CCWWGG 1 cut(s) 1132
Bst2UI CCWGG 1 cut(s) 933
Bst4CI ACNGT 7 cut(s) 64, 284, 409, 652, 784, 1198, 1273
Bst6I CTCTTC 1 cut(s) 1160
BstC8I GCNNGC 2 cut(s) 270, 997
BstDEI CTNAG 6 cut(s) 195, 548, 809, 825, 1234, 1381
BstDSI CCRYGG 3 cut(s) 36, 597, 780
BstF5I GGATG 1 cut(s) 902
BstFNI CGCG 3 cut(s) 599, 1037, 1229
BstHHI GCGC 4 cut(s) 139, 289, 1039, 1342
BstMAI GTCTC 1 cut(s) 1378
BstMWI GCNNNNNNNGC 4 cut(s) 653, 973, 1001, 1362
BstNI CCWGG 1 cut(s) 933
BstSCI CCNGG 2 cut(s) 113, 931
BstSFI CTRYAG 2 cut(s) 189, 1386
BstSLI GKGCMC 2 cut(s) 483, 692
BstUI CGCG 3 cut(s) 599, 1037, 1229
BstV1I GCAGC 7 cut(s) 376, 728, 898, 1051, 1262, 1372, 1400
BstX2I RGATCY 4 cut(s) 292, 555, 812, 1394
BstXI CCANNNNNNTGG 1 cut(s) 1016
BstYI RGATCY 4 cut(s) 292, 555, 812, 1394
Bsu15I ATCGAT 1 cut(s) 221
BsuI GTATCC 1 cut(s) 796
BsuRI GGCC 2 cut(s) 596, 1264
BsuTUI ATCGAT 1 cut(s) 221
BtgI CCRYGG 3 cut(s) 36, 597, 780
BtgZI GCGATG 4 cut(s) 66, 628, 985, 1384
BtrI CACGTC 1 cut(s) 120
BtsCI GGATG 1 cut(s) 902
BtsI GCAGTG 2 cut(s) 423, 483
BtsIMutI CAGTG 4 cut(s) 405, 423, 483, 1194
BveI ACCTGC 1 cut(s) 647
Cac8I GCNNGC 2 cut(s) 270, 997
CfoI GCGC 4 cut(s) 139, 289, 1039, 1342
Cfr13I GGNCC 1 cut(s) 70
Cfr42I CCGCGG 1 cut(s) 600
ClaI ATCGAT 1 cut(s) 221
Csp6I GTAC 4 cut(s) 111, 495, 1124, 1321
CspCI CAANNNNNGTGG 4 cut(s) 250, 285, 837, 872
CviAII CATG 6 cut(s) 183, 265, 325, 604, 838, 1451
CviQI GTAC 4 cut(s) 111, 495, 1124, 1321
DdeI CTNAG 6 cut(s) 195, 548, 809, 825, 1234, 1381
EaeI YGGCCR 1 cut(s) 594
Eam1104I CTCTTC 1 cut(s) 1160
EarI CTCTTC 1 cut(s) 1160
EciI GGCGGA 1 cut(s) 56
Eco130I CCWWGG 1 cut(s) 1132
Eco24I GRGCYC 1 cut(s) 969
Eco47I GGWCC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 1141
EcoRII CCWGG 1 cut(s) 931
EcoT14I CCWWGG 1 cut(s) 1132
EcoT22I ATGCAT 2 cut(s) 902, 1452
EcoT38I GRGCYC 1 cut(s) 969
ErhI CCWWGG 1 cut(s) 1132
Esp3I CGTCTC 1 cut(s) 1378
FaeI CATG 6 cut(s) 186, 268, 328, 607, 841, 1454
FaqI GGGAC 3 cut(s) 130, 229, 767
FatI CATG 6 cut(s) 182, 264, 324, 603, 837, 1450
Fnu4HI GCNGC 8 cut(s) 365, 597, 717, 912, 1040, 1251, 1386, 1389
FokI GGATG 1 cut(s) 909
FriOI GRGCYC 1 cut(s) 969
Fsp4HI GCNGC 8 cut(s) 365, 597, 717, 912, 1040, 1251, 1386, 1389
FspAI RTGCGCAY 1 cut(s) 138
FspBI CTAG 3 cut(s) 638, 816, 1329
FspI TGCGCA 1 cut(s) 138
GlaI GCGC 4 cut(s) 138, 288, 1038, 1341
GluI GCNGC 8 cut(s) 365, 597, 717, 912, 1040, 1251, 1386, 1389
GsaI CCCAGC 1 cut(s) 824
GsuI CTGGAG 1 cut(s) 954
HaeIII GGCC 2 cut(s) 596, 1264
HapII CCGG 7 cut(s) 48, 114, 165, 290, 303, 1392, 1441
HhaI GCGC 4 cut(s) 139, 289, 1039, 1342
Hin1II CATG 6 cut(s) 186, 268, 328, 607, 841, 1454
Hin6I GCGC 4 cut(s) 137, 287, 1037, 1340
HinP1I GCGC 4 cut(s) 137, 287, 1037, 1340
HinfI GANTC 4 cut(s) 44, 391, 630, 796
HpaII CCGG 7 cut(s) 48, 114, 165, 290, 303, 1392, 1441
HphI GGTGA 3 cut(s) 166, 247, 292
Hpy166II GTNNAC 2 cut(s) 1009, 1120
Hpy188I TCNGA 5 cut(s) 70, 396, 1108, 1160, 1247
Hpy188III TCNNGA 6 cut(s) 101, 165, 793, 800, 1085, 1441
Hpy8I GTNNAC 2 cut(s) 1009, 1120
Hpy99I CGWCG 2 cut(s) 89, 656
HpyAV CCTTC 3 cut(s) 14, 1267, 1447
HpyCH4III ACNGT 7 cut(s) 64, 284, 409, 652, 784, 1198, 1273
HpyCH4IV ACGT 4 cut(s) 84, 119, 330, 1122
HpyF10VI GCNNNNNNNGC 4 cut(s) 653, 973, 1001, 1362
HpyF3I CTNAG 6 cut(s) 195, 548, 809, 825, 1234, 1381
HpySE526I ACGT 4 cut(s) 84, 119, 330, 1122
Hsp92II CATG 6 cut(s) 186, 268, 328, 607, 841, 1454
HspAI GCGC 4 cut(s) 137, 287, 1037, 1340
Kpn2I TCCGGA 2 cut(s) 164, 1440
KspI CCGCGG 1 cut(s) 600
LmnI GCTCC 2 cut(s) 167, 1247
Lsp1109I GCAGC 7 cut(s) 376, 728, 898, 1051, 1262, 1372, 1400
LweI GCATC 5 cut(s) 43, 887, 909, 1008, 1281
MaeI CTAG 3 cut(s) 638, 816, 1329
MaeII ACGT 4 cut(s) 84, 119, 330, 1122
MaeIII GTNAC 4 cut(s) 298, 403, 413, 709
MboII GAAGA 4 cut(s) 16, 104, 1147, 1213
MflI RGATCY 4 cut(s) 292, 555, 812, 1394
MhlI GDGCHC 3 cut(s) 483, 692, 969
MluCI AATT 4 cut(s) 313, 505, 562, 1139
MmeI TCCRAC 3 cut(s) 48, 185, 679
MnlI CCTC 5 cut(s) 268, 356, 953, 1163, 1164
Mph1103I ATGCAT 2 cut(s) 902, 1452
MroI TCCGGA 2 cut(s) 164, 1440
MroXI GAANNNNTTC 2 cut(s) 8, 464
MseI TTAA 2 cut(s) 1268, 1314
MslI CAYNNNNRTG 2 cut(s) 152, 323
MspA1I CMGCKG 3 cut(s) 599, 695, 824
MspI CCGG 7 cut(s) 48, 114, 165, 290, 303, 1392, 1441
MspR9I CCNGG 2 cut(s) 115, 933
MvaI CCWGG 1 cut(s) 933
MvnI CGCG 3 cut(s) 599, 1037, 1229
MwoI GCNNNNNNNGC 4 cut(s) 653, 973, 1001, 1362
NciI CCSGG 1 cut(s) 115
NlaIII CATG 6 cut(s) 186, 268, 328, 607, 841, 1454
NlaIV GGNNCC 5 cut(s) 72, 163, 294, 1021, 1396
NmuCI GTSAC 2 cut(s) 298, 403
NsbI TGCGCA 1 cut(s) 138
NsiI ATGCAT 2 cut(s) 902, 1452
OliI CACNNNNGTG 1 cut(s) 152
PaqCI CACCTGC 1 cut(s) 647
PcsI WCGNNNNNNNCGW 3 cut(s) 106, 509, 960
PdmI GAANNNNTTC 2 cut(s) 8, 464
PfeI GAWTC 4 cut(s) 44, 391, 630, 796
PkrI GCNGC 8 cut(s) 366, 598, 718, 913, 1041, 1252, 1387, 1390
PsiI TTATAA 2 cut(s) 1190, 1412
Psp6I CCWGG 1 cut(s) 931
PspFI CCCAGC 1 cut(s) 820
PspGI CCWGG 1 cut(s) 931
PspN4I GGNNCC 5 cut(s) 72, 163, 294, 1021, 1396
PspPI GGNCC 1 cut(s) 70
PstI CTGCAG 1 cut(s) 1390
PsuI RGATCY 4 cut(s) 292, 555, 812, 1394
PvuII CAGCTG 1 cut(s) 824
RsaI GTAC 4 cut(s) 112, 496, 1125, 1322
RsaNI GTAC 4 cut(s) 111, 495, 1124, 1321
RseI CAYNNNNRTG 2 cut(s) 152, 323
SacII CCGCGG 1 cut(s) 600
SaqAI TTAA 2 cut(s) 1268, 1314
SatI GCNGC 8 cut(s) 365, 597, 717, 912, 1040, 1251, 1386, 1389
Sau96I GGNCC 1 cut(s) 70
ScaI AGTACT 1 cut(s) 1322
ScrFI CCNGG 2 cut(s) 115, 933
SduI GDGCHC 3 cut(s) 483, 692, 969
SfaNI GCATC 5 cut(s) 43, 887, 909, 1008, 1281
SfcI CTRYAG 2 cut(s) 189, 1386
Sfr303I CCGCGG 1 cut(s) 600
SgrBI CCGCGG 1 cut(s) 600
SinI GGWCC 1 cut(s) 70
SmiMI CAYNNNNRTG 2 cut(s) 152, 323
Sse9I AATT 4 cut(s) 313, 505, 562, 1139
SspI AATATT 1 cut(s) 1112
SspMI CTAG 3 cut(s) 638, 816, 1329
StyD4I CCNGG 2 cut(s) 113, 931
StyI CCWWGG 1 cut(s) 1132
TaaI ACNGT 7 cut(s) 64, 284, 409, 652, 784, 1198, 1273
TaiI ACGT 4 cut(s) 87, 122, 333, 1125
TaqI TCGA 8 cut(s) 87, 100, 221, 337, 458, 503, 792, 963
TaqII GACCGA 1 cut(s) 623
TasI AATT 4 cut(s) 313, 505, 562, 1139
TatI WGTACW 2 cut(s) 494, 1320
TauI GCSGC 1 cut(s) 599
TfiI GAWTC 4 cut(s) 44, 391, 630, 796
Tru1I TTAA 2 cut(s) 1268, 1314
Tru9I TTAA 2 cut(s) 1268, 1314
TscAI CASTG 4 cut(s) 412, 430, 490, 1201
TseFI GTSAC 2 cut(s) 298, 403
TseI GCWGC 7 cut(s) 364, 716, 911, 1039, 1250, 1385, 1388
Tsp45I GTSAC 2 cut(s) 298, 403
TspDTI ATGAA 5 cut(s) 17, 105, 232, 854, 1087
TspGWI ACGGA 2 cut(s) 325, 501
TspRI CASTG 4 cut(s) 412, 430, 490, 1201
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 2 cut(s) 562, 1139
XmnI GAANNNNTTC 2 cut(s) 8, 464
XspI CTAG 3 cut(s) 638, 816, 1329
ZrmI AGTACT 1 cut(s) 1322
Zsp2I ATGCAT 2 cut(s) 902, 1452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.