Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012419

Orthogroup ID

OG0001778

Physical Location & Seq

Genomic Coordinates Reverse (-)

685914 .. 686771

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12419g00300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTCCGGAATGAGCATTGGGGTTGTGACTCCAGCCCAAAAGATGTGGAGGACCTTCCAAGCACTTGGTGACATAGCTTTTGCCTTCTCTTACTCAATCATCCTCATTGAAATTCAGGACACAGTTAAATCCCCACCATCTGAAACCAAAACAATGAAGAAGGCCACTCAACTTAGTTTGGCAGTGACGTCCATTTTCTACATTCTATGCGGCTGCATGGGCTACGCTGCTTTTGGAGACTTAGCTCCGGGAAACCTCCTTACTGACAAAGGCTTATCCAGACCATTTTGGCTCATCGACATAGCCAACGCCGCCATTGTGATCGATCTTGTTGGTGCATACCAAGTTTTCGCCCAACCCATTTTCGCATTGGTCGAAAAAACAGCAGCAAAAATTTTTCCAGCCAGCCAGTTCATCACAAAAGACATCAAAATAACAATCCCGCATTTAGGTTCCTACAACCTTAACCTCTTCAGTTTGGTTTGGAGAACATTATTTGTGATTCTAACCACTGTGATCTCCATGATCCTCCCATTCTTCAACAATGTGGTTGGATTTCTCGGGGCTTTGGGGTATTGGCCACTCACAGTTTATTTCCCCGTGGAGATGTACATTGCTCAAAAGAAGATACAAAAGTGGAGCATGAGATGGATTTGCCTCGAAATCCTCAGTTTTTGTGTCCTTGTAATCGCCCTATGTGCTGCAGGTGGTTCAGTTACTGGTGTGGTTCATGATCTCAAGGTCTACAAGCCCTTCAAAACCAGCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

257

Amino Acids

28.25

Weight (kDa)

9.15

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10010 AT1G10010 AT1G58360
fragaria_vesca	FvH4_2g27660 FvH4_2g27660 FvH4_2g27660 FvH4_2g27660 FvH4_2g27661 FvH4_2g27661 FvH4_5g12780
malus_domestica	MD00G1140000.v1.1 MD08G1158200.v1.1 MD15G1343500.v1.1 MD15G1343600.v1.1 MD15G1343900.v1.1
prunus_persica	Prupe.1G491000_v2.0.a1 Prupe.1G491000_v2.0.a1 Prupe.1G491000_v2.0.a1 Prupe.1G491100_v2.0.a1 Prupe.1G491200_v2.0.a1 Prupe.1G491300_v2.0.a1
pyrus_communis	pycom08g05160 pycom12419g00300 pycom15g30720
rosa_chinensis	RchiOBHm_Chr6g0296481 RchiOBHm_Chr6g0296511
rosa_laevigata	RLG00000011686 RLG00000011687 RLG00000011688
rosa_multiflora	Rmu_sc0001146.1_g000005 Rmu_sc0004318.1_g000010 Rmu_sc0006174.1_g000011
rosa_roxburghii	Rroxscaffold_7G00171480 Rroxscaffold_7G00171490 Rroxscaffold_7G00178640 Rroxscaffold_7G00178650
rosa_rugosa	Rorug06G0262800
rosa_samantha	Rh6AG374100 Rh6AG374300 Rh6BG382700 Rh6BG382800 Rh6CG387500 Rh6CG387800 Rh6DG375300 Rh6DG375500
rosa_wichuraiana	Rw6G032630 Rw6G032640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	695
AatII	GACGTC	1 cut(s)	191
Acc36I	ACCTGC	1 cut(s)	695
AccI	GTMKAC	1 cut(s)	744
AccIII	TCCGGA	1 cut(s)	5
AciI	CCGC	3 cut(s)	210, 312, 443
AclWI	GGATC	1 cut(s)	520
AcoI	YGGCCR	1 cut(s)	578
AcsI	RAATTY	2 cut(s)	111, 393
AcuI	CTGAAG	1 cut(s)	457
AcyI	GRCGYC	1 cut(s)	188
AdeI	CACNNNGTG	1 cut(s)	68
AfaI	GTAC	1 cut(s)	611
AfiI	CCNNNNNNNGG	1 cut(s)	449
AgsI	TTSAA	3 cut(s)	110, 541, 757
AluBI	AGCT	2 cut(s)	77, 245
AluI	AGCT	2 cut(s)	77, 245
Alw26I	GTCTC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	520
AlwNI	CAGNNNCTG	1 cut(s)	719
Ama87I	CYCGRG	1 cut(s)	560
Aor13HI	TCCGGA	1 cut(s)	5
AoxI	GGCC	2 cut(s)	162, 578
ApeKI	GCWGC	4 cut(s)	213, 227, 386, 701
ApoI	RAATTY	2 cut(s)	111, 393
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AspS9I	GGNCC	1 cut(s)	51
AsuC2I	CCSGG	1 cut(s)	249
AsuHPI	GGTGA	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	560
AvaII	GGWCC	1 cut(s)	51
BaeI	ACNNNNGTAYC	2 cut(s)	620, 653
BalI	TGGCCA	1 cut(s)	580
BbvI	GCAGC	4 cut(s)	200, 214, 398, 688
BccI	CCATC	2 cut(s)	145, 642
BcnI	CCSGG	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	231
BfmI	CTRYAG	1 cut(s)	702
BfuAI	ACCTGC	1 cut(s)	695
BisI	GCNGC	6 cut(s)	211, 214, 228, 312, 387, 702
BlsI	GCNGC	6 cut(s)	212, 215, 229, 313, 388, 703
Bme1390I	CCNGG	1 cut(s)	249
Bme18I	GGWCC	1 cut(s)	51
BmeT110I	CYCGRG	1 cut(s)	560
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	1 cut(s)	454
BmrFI	CCNGG	1 cut(s)	249
BpmI	CTGGAG	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	722
BpuMI	CCSGG	1 cut(s)	249
Bsa29I	ATCGAT	1 cut(s)	324
BsaHI	GRCGYC	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	600
BsaWI	WCCGGW	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse1I	ACTGG	2 cut(s)	409, 724
Bse3DI	GCAATG	1 cut(s)	612
BseAI	TCCGGA	1 cut(s)	5
BseCI	ATCGAT	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	600
BseGI	GGATG	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseMI	GCAATG	1 cut(s)	612
BseMII	CTCAG	1 cut(s)	682
BseNI	ACTGG	2 cut(s)	409, 724
BseXI	GCAGC	4 cut(s)	200, 214, 398, 688
BshFI	GGCC	2 cut(s)	164, 580
BshVI	ATCGAT	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	560
BsiSI	CCGG	2 cut(s)	6, 248
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmAI	GTCTC	1 cut(s)	231
BsnI	GGCC	2 cut(s)	164, 580
BsoBI	CYCGRG	1 cut(s)	560
Bsp13I	TCCGGA	1 cut(s)	5
Bsp1407I	TGTACA	1 cut(s)	609
Bsp143I	GATC	5 cut(s)	321, 325, 516, 525, 733
BspACI	CCGC	3 cut(s)	210, 312, 443
BspANI	GGCC	2 cut(s)	164, 580
BspCNI	CTCAG	1 cut(s)	681
BspDI	ATCGAT	1 cut(s)	324
BspEI	TCCGGA	1 cut(s)	5
BspHI	TCATGA	1 cut(s)	730
BspLI	GGNNCC	1 cut(s)	454
BspMAI	CTGCAG	1 cut(s)	706
BspMI	ACCTGC	1 cut(s)	695
BspPI	GGATC	1 cut(s)	520
BsrDI	GCAATG	1 cut(s)	612
BsrGI	TGTACA	1 cut(s)	609
BsrI	ACTGG	2 cut(s)	409, 724
BssECI	CCNNGG	1 cut(s)	600
BssMI	GATC	5 cut(s)	321, 325, 516, 525, 733
BssNI	GRCGYC	1 cut(s)	188
Bst4CI	ACNGT	3 cut(s)	124, 514, 589
Bst6I	CTCTTC	1 cut(s)	476
BstACI	GRCGYC	1 cut(s)	188
BstAUI	TGTACA	1 cut(s)	609
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	3 cut(s)	173, 241, 668
BstDSI	CCRYGG	1 cut(s)	600
BstF5I	GGATG	1 cut(s)	99
BstKTI	GATC	5 cut(s)	324, 328, 519, 528, 736
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	5 cut(s)	321, 325, 516, 525, 733
BstMWI	GCNNNNNNNGC	3 cut(s)	219, 311, 698
BstSCI	CCNGG	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	702
BstV1I	GCAGC	4 cut(s)	200, 214, 398, 688
BstXI	CCANNNNNNTGG	1 cut(s)	65
Bsu15I	ATCGAT	1 cut(s)	324
BsuRI	GGCC	2 cut(s)	164, 580
BsuTUI	ATCGAT	1 cut(s)	324
BtgI	CCRYGG	1 cut(s)	600
BtsCI	GGATG	1 cut(s)	99
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	2 cut(s)	189, 510
BveI	ACCTGC	1 cut(s)	695
Cac8I	GCNNGC	1 cut(s)	406
CaiI	CAGNNNCTG	1 cut(s)	719
CciI	TCATGA	1 cut(s)	730
Cfr13I	GGNCC	1 cut(s)	51
ClaI	ATCGAT	1 cut(s)	324
Csp6I	GTAC	1 cut(s)	610
CspCI	CAANNNNNGTGG	2 cut(s)	26, 61
CviAII	CATG	4 cut(s)	217, 523, 643, 731
CviQI	GTAC	1 cut(s)	610
DdeI	CTNAG	3 cut(s)	173, 241, 668
DpnI	GATC	5 cut(s)	323, 327, 518, 527, 735
DpnII	GATC	5 cut(s)	321, 325, 516, 525, 733
DraIII	CACNNNGTG	1 cut(s)	68
EaeI	YGGCCR	1 cut(s)	578
Eam1104I	CTCTTC	1 cut(s)	476
EarI	CTCTTC	1 cut(s)	476
Eco47I	GGWCC	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	457
Eco88I	CYCGRG	1 cut(s)	560
EcoO109I	RGGNCCY	1 cut(s)	51
FaeI	CATG	4 cut(s)	220, 526, 646, 734
FaiI	YATR	9 cut(s)	74, 208, 218, 302, 340, 524, 644, 697, 732
FatI	CATG	4 cut(s)	216, 522, 642, 730
FauI	CCCGC	1 cut(s)	450
FblI	GTMKAC	1 cut(s)	744
Fnu4HI	GCNGC	6 cut(s)	211, 214, 228, 312, 387, 702
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	6 cut(s)	211, 214, 228, 312, 387, 702
GluI	GCNGC	6 cut(s)	211, 214, 228, 312, 387, 702
GsuI	CTGGAG	1 cut(s)	15
HaeIII	GGCC	2 cut(s)	164, 580
HapII	CCGG	2 cut(s)	6, 248
Hin1I	GRCGYC	1 cut(s)	188
Hin1II	CATG	4 cut(s)	220, 526, 646, 734
HinfI	GANTC	2 cut(s)	28, 502
HpaII	CCGG	2 cut(s)	6, 248
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	1 cut(s)	745
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	4 cut(s)	6, 116, 279, 731
Hpy8I	GTNNAC	1 cut(s)	745
HpyAV	CCTTC	4 cut(s)	64, 94, 154, 763
HpyCH4III	ACNGT	3 cut(s)	124, 514, 589
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	3 cut(s)	216, 338, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	219, 311, 698
HpyF3I	CTNAG	3 cut(s)	173, 241, 668
HpySE526I	ACGT	1 cut(s)	188
Hsp92I	GRCGYC	1 cut(s)	188
Hsp92II	CATG	4 cut(s)	220, 526, 646, 734
Kpn2I	TCCGGA	1 cut(s)	5
Kzo9I	GATC	5 cut(s)	321, 325, 516, 525, 733
LmnI	GCTCC	2 cut(s)	250, 639
Lsp1109I	GCAGC	4 cut(s)	200, 214, 398, 688
MaeII	ACGT	1 cut(s)	188
MaeIII	GTNAC	4 cut(s)	25, 68, 184, 715
MalI	GATC	5 cut(s)	323, 327, 518, 527, 735
MboI	GATC	5 cut(s)	321, 325, 516, 525, 733
MboII	GAAGA	4 cut(s)	169, 463, 529, 637
MlsI	TGGCCA	1 cut(s)	580
MluCI	AATT	2 cut(s)	111, 393
MluNI	TGGCCA	1 cut(s)	580
MlyI	GAGTC	1 cut(s)	22
MmeI	TCCRAC	1 cut(s)	532
MnlI	CCTC	7 cut(s)	42, 113, 266, 479, 539, 668, 677
Mox20I	TGGCCA	1 cut(s)	580
MroI	TCCGGA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	580
MseI	TTAA	3 cut(s)	126, 465, 769
Msp20I	TGGCCA	1 cut(s)	580
MspI	CCGG	2 cut(s)	6, 248
MspR9I	CCNGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	3 cut(s)	219, 311, 698
NciI	CCSGG	1 cut(s)	249
NdeII	GATC	5 cut(s)	321, 325, 516, 525, 733
NlaIII	CATG	4 cut(s)	220, 526, 646, 734
NlaIV	GGNNCC	1 cut(s)	454
NmuCI	GTSAC	3 cut(s)	25, 68, 184
PagI	TCATGA	1 cut(s)	730
PaqCI	CACCTGC	1 cut(s)	695
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	502
PfoI	TCCNGGA	1 cut(s)	247
PkrI	GCNGC	6 cut(s)	212, 215, 229, 313, 388, 703
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
PpuMI	RGGWCCY	1 cut(s)	51
Psp5II	RGGWCCY	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	454
PspPI	GGNCC	1 cut(s)	51
PspPPI	RGGWCCY	1 cut(s)	51
PstI	CTGCAG	1 cut(s)	706
PstNI	CAGNNNCTG	1 cut(s)	719
RsaI	GTAC	1 cut(s)	611
RsaNI	GTAC	1 cut(s)	610
SaqAI	TTAA	3 cut(s)	126, 465, 769
SatI	GCNGC	6 cut(s)	211, 214, 228, 312, 387, 702
Sau3AI	GATC	5 cut(s)	321, 325, 516, 525, 733
Sau96I	GGNCC	1 cut(s)	51
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	249
SfcI	CTRYAG	1 cut(s)	702
SinI	GGWCC	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	737
SmoI	CTYRAG	1 cut(s)	737
Sse9I	AATT	2 cut(s)	111, 393
SsiI	CCGC	3 cut(s)	210, 312, 443
StyD4I	CCNGG	1 cut(s)	247
TaaI	ACNGT	3 cut(s)	124, 514, 589
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	4 cut(s)	297, 324, 375, 660
TasI	AATT	2 cut(s)	111, 393
TatI	WGTACW	1 cut(s)	609
TauI	GCSGC	2 cut(s)	213, 314
TfiI	GAWTC	1 cut(s)	502
Tru1I	TTAA	3 cut(s)	126, 465, 769
Tru9I	TTAA	3 cut(s)	126, 465, 769
TscAI	CASTG	2 cut(s)	189, 517
TseFI	GTSAC	3 cut(s)	25, 68, 184
TseI	GCWGC	4 cut(s)	213, 227, 386, 701
Tsp45I	GTSAC	3 cut(s)	25, 68, 184
TspDTI	ATGAA	3 cut(s)	170, 403, 719
TspRI	CASTG	2 cut(s)	189, 517
VpaK11BI	GGWCC	1 cut(s)	51
XapI	RAATTY	2 cut(s)	111, 393
XcmI	CCANNNNNNNNNTGG	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	744
ZraI	GACGTC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.