Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001778

Physical Location & Seq

Genomic Coordinates Reverse (-)

40869077 .. 40869927

Gene Structure 851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0262800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAATTCTCAGCACTCGTCTTCGAGGCCTAACAGTTCCAGTTTGAAATCTAGGTTCACACTAGGGTTTCTTCGAGCCCTGAAGAGATTAAACAGGCAACCATCATCATCATCATCACCGCCACAAACTGTATCTTCTCCTAGGGAGATGTGTAGACGATATCTGAGAATTAGAATTGCTGCTGATGCATCCATGGCTTCAGCTGTGGGGTCTAGAAGAGCTTGGAGTCGTGCTTTGCTTCTCAAGATTCGAAGCAGACAATCCCGGTCTTCTAATTCATCTGCCAGAAGAGTTAGCATGAAAAAGAAATGCTTAGGGGAGAAGATAAAGAAGAAAAAGAAGCTCAAGTGTTGTAAGGAGATCAACAAGCTTCGGAAGTTCGTACCTGGTGGCGAAGCCATGGATGCTTGCAGCTTGTTGGATGAGGCTGCCCATTACATAAGGTGCCTCAACACACAGGTAAAGGTGATGACAAGGATTGCGGATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015318 GO:0015711 GO:0015802 GO:0015809 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

163

Amino Acids

18.36

Weight (kDa)

11.35

Isoelectric Point (pI)

71.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBH1_N	PF26576	13 - 86	5.4e-14	IBH1-like, N-terminal domain
bHLH_SAC51	PF23173	106 - 155	1.2e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10010 AT1G10010 AT1G58360
fragaria_vesca	FvH4_2g27660 FvH4_2g27660 FvH4_2g27660 FvH4_2g27660 FvH4_2g27661 FvH4_2g27661 FvH4_5g12780
malus_domestica	MD00G1140000.v1.1 MD08G1158200.v1.1 MD15G1343500.v1.1 MD15G1343600.v1.1 MD15G1343900.v1.1
prunus_persica	Prupe.1G491000_v2.0.a1 Prupe.1G491000_v2.0.a1 Prupe.1G491000_v2.0.a1 Prupe.1G491100_v2.0.a1 Prupe.1G491200_v2.0.a1 Prupe.1G491300_v2.0.a1
pyrus_communis	pycom08g05160 pycom12419g00300 pycom15g30720
rosa_chinensis	RchiOBHm_Chr6g0296481 RchiOBHm_Chr6g0296511
rosa_laevigata	RLG00000011686 RLG00000011687 RLG00000011688
rosa_multiflora	Rmu_sc0001146.1_g000005 Rmu_sc0004318.1_g000010 Rmu_sc0006174.1_g000011
rosa_roxburghii	Rroxscaffold_7G00171480 Rroxscaffold_7G00171490 Rroxscaffold_7G00178640 Rroxscaffold_7G00178650
rosa_rugosa	Rorug06G0262800
rosa_samantha	Rh6AG374100 Rh6AG374300 Rh6BG382700 Rh6BG382800 Rh6CG387500 Rh6CG387800 Rh6DG375300 Rh6DG375500
rosa_wichuraiana	Rw6G032630 Rw6G032640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	444
AccI	GTMKAC	1 cut(s)	154
AciI	CCGC	2 cut(s)	119, 482
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	2 cut(s)	101, 183
AfaI	GTAC	1 cut(s)	384
AgsI	TTSAA	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	385
AluBI	AGCT	5 cut(s)	203, 221, 343, 370, 414
AluI	AGCT	5 cut(s)	203, 221, 343, 370, 414
AoxI	GGCC	1 cut(s)	26
ApeKI	GCWGC	3 cut(s)	179, 411, 428
ApoI	RAATTY	1 cut(s)	4
AspA2I	CCTAGG	1 cut(s)	140
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	2 cut(s)	108, 478
AsuII	TTCGAA	1 cut(s)	250
AvrII	CCTAGG	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	444
BanII	GRGCYC	1 cut(s)	79
BbsI	GAAGAC	2 cut(s)	12, 261
BbvI	GCAGC	3 cut(s)	166, 415, 423
BccI	CCATC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	387
BcnI	CCSGG	1 cut(s)	265
BfaI	CTAG	4 cut(s)	51, 62, 141, 213
BisI	GCNGC	3 cut(s)	180, 412, 429
BlnI	CCTAGG	1 cut(s)	140
BlsI	GCNGC	3 cut(s)	181, 413, 430
Bme1390I	CCNGG	2 cut(s)	265, 387
BmiI	GGNNCC	1 cut(s)	446
BmrFI	CCNGG	2 cut(s)	265, 387
BmsI	GCATC	3 cut(s)	175, 197, 394
BpiI	GAAGAC	2 cut(s)	12, 261
Bpu10I	CCTNAGC	1 cut(s)	313
Bpu14I	TTCGAA	1 cut(s)	250
BpuEI	CTTGAG	2 cut(s)	227, 329
BpuMI	CCSGG	1 cut(s)	265
BsaJI	CCNNGG	3 cut(s)	140, 192, 399
Bse1I	ACTGG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	387
BseDI	CCNNGG	3 cut(s)	140, 192, 399
BseGI	GGATG	3 cut(s)	188, 409, 427
BseMII	CTCAG	2 cut(s)	23, 155
BseNI	ACTGG	1 cut(s)	39
BseXI	GCAGC	3 cut(s)	166, 415, 423
BshFI	GGCC	1 cut(s)	28
BshNI	GGYRCC	1 cut(s)	444
BsiSI	CCGG	1 cut(s)	265
BsnI	GGCC	1 cut(s)	28
Bsp119I	TTCGAA	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	360
Bsp19I	CCATGG	2 cut(s)	192, 399
BspACI	CCGC	2 cut(s)	119, 482
BspANI	GGCC	1 cut(s)	28
BspCNI	CTCAG	2 cut(s)	22, 156
BspLI	GGNNCC	1 cut(s)	446
BspQI	GCTCTTC	1 cut(s)	211
BspT104I	TTCGAA	1 cut(s)	250
BspT107I	GGYRCC	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	39
BssECI	CCNNGG	3 cut(s)	140, 192, 399
BssMI	GATC	1 cut(s)	360
BssT1I	CCWWGG	3 cut(s)	140, 192, 399
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	2 cut(s)	35, 130
Bst6I	CTCTTC	3 cut(s)	77, 211, 283
BstBI	TTCGAA	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	3 cut(s)	9, 164, 313
BstDSI	CCRYGG	2 cut(s)	192, 399
BstF5I	GGATG	3 cut(s)	188, 409, 427
BstKTI	GATC	1 cut(s)	363
BstMBI	GATC	1 cut(s)	360
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 194, 404
BstNI	CCWGG	1 cut(s)	387
BstSCI	CCNGG	2 cut(s)	263, 385
BstV1I	GCAGC	3 cut(s)	166, 415, 423
BstV2I	GAAGAC	2 cut(s)	12, 261
BsuRI	GGCC	1 cut(s)	28
BtgI	CCRYGG	2 cut(s)	192, 399
BtsCI	GGATG	3 cut(s)	188, 409, 427
Cac8I	GCNNGC	1 cut(s)	409
CsiI	ACCWGGT	1 cut(s)	385
Csp6I	GTAC	1 cut(s)	383
CviAII	CATG	3 cut(s)	193, 298, 400
CviQI	GTAC	1 cut(s)	383
DdeI	CTNAG	3 cut(s)	9, 164, 313
DpnI	GATC	1 cut(s)	362
DpnII	GATC	1 cut(s)	360
Eam1104I	CTCTTC	3 cut(s)	77, 211, 283
EarI	CTCTTC	3 cut(s)	77, 211, 283
Eco130I	CCWWGG	3 cut(s)	140, 192, 399
Eco147I	AGGCCT	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	79
Eco32I	GATATC	1 cut(s)	161
Eco57I	CTGAAG	2 cut(s)	101, 183
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	385
EcoRV	GATATC	1 cut(s)	161
EcoT14I	CCWWGG	3 cut(s)	140, 192, 399
EcoT22I	ATGCAT	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	3 cut(s)	140, 192, 399
FaeI	CATG	3 cut(s)	196, 301, 403
FaiI	YATR	4 cut(s)	194, 299, 401, 440
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FatI	CATG	3 cut(s)	192, 297, 399
FblI	GTMKAC	1 cut(s)	154
Fnu4HI	GCNGC	3 cut(s)	180, 412, 429
FokI	GGATG	3 cut(s)	175, 416, 434
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	3 cut(s)	180, 412, 429
FspBI	CTAG	4 cut(s)	51, 62, 141, 213
GluI	GCNGC	3 cut(s)	180, 412, 429
HaeIII	GGCC	1 cut(s)	28
HapII	CCGG	1 cut(s)	265
Hin1II	CATG	3 cut(s)	196, 301, 403
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	2 cut(s)	226, 247
HpaII	CCGG	1 cut(s)	265
HphI	GGTGA	2 cut(s)	108, 478
Hpy166II	GTNNAC	2 cut(s)	57, 155
Hpy188I	TCNGA	2 cut(s)	165, 375
Hpy188III	TCNNGA	2 cut(s)	213, 244
Hpy8I	GTNNAC	2 cut(s)	57, 155
HpyCH4III	ACNGT	2 cut(s)	35, 130
HpyCH4V	TGCA	2 cut(s)	188, 411
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 194, 404
HpyF3I	CTNAG	3 cut(s)	9, 164, 313
Hsp92II	CATG	3 cut(s)	196, 301, 403
Kzo9I	GATC	1 cut(s)	360
LguI	GCTCTTC	1 cut(s)	211
LpnPI	CCDG	8 cut(s)	52, 79, 92, 278, 298, 372, 399, 443
Lsp1109I	GCAGC	3 cut(s)	166, 415, 423
LweI	GCATC	3 cut(s)	175, 197, 394
MabI	ACCWGGT	1 cut(s)	385
MaeI	CTAG	4 cut(s)	51, 62, 141, 213
MalI	GATC	1 cut(s)	362
MboI	GATC	1 cut(s)	360
MboII	GAAGA	9 cut(s)	12, 62, 94, 126, 228, 261, 300, 334, 343
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	5 cut(s)	4, 168, 174, 274, 487
MlyI	GAGTC	1 cut(s)	235
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	3 cut(s)	18, 418, 458
Mph1103I	ATGCAT	1 cut(s)	190
MseI	TTAA	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	1 cut(s)	265
MspR9I	CCNGG	2 cut(s)	265, 387
MvaI	CCWGG	1 cut(s)	387
MwoI	GCNNNNNNNGC	3 cut(s)	185, 194, 404
NciI	CCSGG	1 cut(s)	265
NcoI	CCATGG	2 cut(s)	192, 399
NdeII	GATC	1 cut(s)	360
NlaIII	CATG	3 cut(s)	196, 301, 403
NlaIV	GGNNCC	1 cut(s)	446
NsiI	ATGCAT	1 cut(s)	190
NspV	TTCGAA	1 cut(s)	250
PceI	AGGCCT	1 cut(s)	28
PciSI	GCTCTTC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	247
PkrI	GCNGC	3 cut(s)	181, 413, 430
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	385
PspN4I	GGNNCC	1 cut(s)	446
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	384
RsaNI	GTAC	1 cut(s)	383
SapI	GCTCTTC	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	3 cut(s)	180, 412, 429
Sau3AI	GATC	1 cut(s)	360
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	2 cut(s)	265, 387
SduI	GDGCHC	1 cut(s)	79
SexAI	ACCWGGT	1 cut(s)	385
SfaNI	GCATC	3 cut(s)	175, 197, 394
SfuI	TTCGAA	1 cut(s)	250
SmlI	CTYRAG	2 cut(s)	242, 344
SmoI	CTYRAG	2 cut(s)	242, 344
Sse9I	AATT	5 cut(s)	4, 168, 174, 274, 487
SseBI	AGGCCT	1 cut(s)	28
SsiI	CCGC	2 cut(s)	119, 482
SspMI	CTAG	4 cut(s)	51, 62, 141, 213
StuI	AGGCCT	1 cut(s)	28
StyD4I	CCNGG	2 cut(s)	263, 385
StyI	CCWWGG	3 cut(s)	140, 192, 399
TaaI	ACNGT	2 cut(s)	35, 130
TaqI	TCGA	3 cut(s)	23, 73, 250
TasI	AATT	5 cut(s)	4, 168, 174, 274, 487
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TseI	GCWGC	3 cut(s)	179, 411, 428
TspDTI	ATGAA	3 cut(s)	17, 267, 314
XapI	RAATTY	1 cut(s)	4
XbaI	TCTAGA	1 cut(s)	212
XmaJI	CCTAGG	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	154
XspI	CTAG	4 cut(s)	51, 62, 141, 213
Zsp2I	ATGCAT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.