Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001778

Physical Location & Seq

Genomic Coordinates Reverse (-)

40038078 .. 40040635

Gene Structure 2558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1343900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGAGTAAGATGGGTGATAACCAGATTAACCCCCGTCAAGGTTTTGAACTCTCAGTCCCTATGCCTCCAGAAGTAGGCTCCAAGTGCTATGACGACGATGGCCGTCTCAAAAGAACTGGAACTGTATGGACTGCAAGTGCTCATATTATTACTGCGGTAATTGGGTCTGGAGTTTTGTCCTTGGCTTGGGCAGTAGCTCAGCTAGGATGGGTTGCTGGTCCTGCTGTGATGCTCTTGTTCTCCTTTGTCACTTACTACACTTCAACTCTTCTCTCTGCCTGCTATCGTTCCGGCGATCCTGTCATCGGAAAAAGAAACTATACTTACACCGATGCCGTCCGATCCAACCTTGGTGGGTTCAAGGTGAAAATTTGTGGGTTTGTTCAGTACTTGAATCTCTTTGGAGTTGCCATTGGATACACTATAGCATCATCCATAAGCATGGTGGCAATTAAGAGGTCTAATTGTTTCTACAAGAATGGTGACACAGCACCATGCCATGTAAACAGCAATCCTTACATGATCGCTTTTGGGGTAGCAGAAATCATATTTTCTCAAATTCCAGACTTCGATCAGTTGTGGTGGCTCTCCATTGTTGCTGCAGTCATGTCCTTCACTTATTCCTCCATCGGACTTGGCCTTGGAATAGCCAAAGTCGTAGAAACTGGAACGATCAAAGGAAGTATGACTGGAATAGACATTGGAGCAGTGACTGAAACACAAAAAATATGGAGGAGCTTCCAAGCACTTGGGGACATAGCTTTTGCCTACTCATATTCTCTCATCCTCATTGAAATTCAGGACACAATAAAATCCCCGCCATCCGAAGCCAAGACAATGAAGAAGGCAACTCTTGTCAGTGTGGCTACCACAACCCTTTTCTACATGTTGTGTGGTTGCATGGGCTACGCTGCTTTTGGAGACTCATCCCCTGGAAACCTCCTCACTGGTTTCGGCTTCTTCAACCCCTACTGGCTCATCGACATAGCCAACGCCGCCATTGTCATCCACCTTGTTGGTGCTTACCAAGTGTTTGTCCAACCCCTCTATGCATTTGTTGAGAAAACAGTAAAAGAAAAGTACCCGCATAGCCGGTTCATTACCAAAGACATCAAATTCCGACTCCCAGTTTTCGGTTCTTACAATCTCAACCTCTTCAGACTGGTTTGGAGGACATCTTTTGTGATTGTCACCACTGTGATCTCCATGATCCTGCCATTTTTCAATGATGTTGTTGGACTTCTAGGGGCTCTAGGATTTTGGCCGCTCACAGTTTACTTCCCTGTGGAGATGTATATTGCTCAAAAGAGGATACCAAAGTGGAGCACAAAATGGCTTTGCCTCCAAACCTTGAGTGGTGCTTGCCTTATAATCACCATAGCAGCTGCTGCTGGATCAATTGCTGGTGTGATTAGTGATCTCAAGATCTACAAGCCTTTCAAGACCAGCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015174 GO:0015318 GO:0015711 GO:0015802 GO:0015809 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039 GO:1990822

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

485

Amino Acids

53.11

Weight (kDa)

9.12

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	38 - 471	9.5e-123	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10010 AT1G10010 AT1G58360
fragaria_vesca	FvH4_2g27660 FvH4_2g27660 FvH4_2g27660 FvH4_2g27660 FvH4_2g27661 FvH4_2g27661 FvH4_5g12780
malus_domestica	MD00G1140000.v1.1 MD08G1158200.v1.1 MD15G1343500.v1.1 MD15G1343600.v1.1 MD15G1343900.v1.1
prunus_persica	Prupe.1G491000_v2.0.a1 Prupe.1G491000_v2.0.a1 Prupe.1G491000_v2.0.a1 Prupe.1G491100_v2.0.a1 Prupe.1G491200_v2.0.a1 Prupe.1G491300_v2.0.a1
pyrus_communis	pycom08g05160 pycom12419g00300 pycom15g30720
rosa_chinensis	RchiOBHm_Chr6g0296481 RchiOBHm_Chr6g0296511
rosa_laevigata	RLG00000011686 RLG00000011687 RLG00000011688
rosa_multiflora	Rmu_sc0001146.1_g000005 Rmu_sc0004318.1_g000010 Rmu_sc0006174.1_g000011
rosa_roxburghii	Rroxscaffold_7G00171480 Rroxscaffold_7G00171490 Rroxscaffold_7G00178640 Rroxscaffold_7G00178650
rosa_rugosa	Rorug06G0262800
rosa_samantha	Rh6AG374100 Rh6AG374300 Rh6BG382700 Rh6BG382800 Rh6CG387500 Rh6CG387800 Rh6DG375300 Rh6DG375500
rosa_wichuraiana	Rw6G032630 Rw6G032640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1370
AccBSI	CCGCTC	1 cut(s)	1267
AciI	CCGC	5 cut(s)	155, 818, 996, 1085, 1265
AclWI	GGATC	4 cut(s)	290, 336, 1204, 1402
AcoI	YGGCCR	2 cut(s)	100, 1262
AcsI	RAATTY	4 cut(s)	369, 558, 795, 1115
AcuI	CTGAAG	1 cut(s)	1141
AfaI	GTAC	2 cut(s)	389, 1082
AfiI	CCNNNNNNNGG	5 cut(s)	38, 74, 186, 305, 1133
AflIII	ACRYGT	1 cut(s)	885
AgsI	TTSAA	8 cut(s)	47, 264, 361, 394, 794, 964, 1225, 1441
AjnI	CCWGG	1 cut(s)	931
AleI	CACNNNNGTG	1 cut(s)	1196
AloI	GAACNNNNNNTCC	2 cut(s)	39, 71
AluBI	AGCT	6 cut(s)	197, 202, 738, 761, 1385, 1449
AluI	AGCT	6 cut(s)	197, 202, 738, 761, 1385, 1449
Alw21I	GWGCWC	2 cut(s)	142, 1328
Alw26I	GTCTC	2 cut(s)	110, 915
AlwI	GGATC	4 cut(s)	290, 336, 1204, 1402
AlwNI	CAGNNNCTG	3 cut(s)	713, 1388, 1452
AoxI	GGCC	3 cut(s)	100, 637, 1262
ApeKI	GCWGC	5 cut(s)	599, 911, 1382, 1385, 1388
ApoI	RAATTY	4 cut(s)	369, 558, 795, 1115
ArsI	GACNNNNNNTTYG	2 cut(s)	746, 778
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	5 cut(s)	26, 376, 494, 1183, 1366
AvaII	GGWCC	1 cut(s)	218
BaeI	ACNNNNGTAYC	2 cut(s)	1304, 1337
BanII	GRGCYC	1 cut(s)	1252
Bbv12I	GWGCWC	2 cut(s)	142, 1328
BbvI	GCAGC	5 cut(s)	586, 898, 1372, 1375, 1394
BccI	CCATC	5 cut(s)	4, 92, 201, 635, 829
BceAI	ACGGC	2 cut(s)	87, 320
BciT130I	CCWGG	1 cut(s)	933
BciVI	GTATCC	2 cut(s)	410, 1305
BcoDI	GTCTC	2 cut(s)	110, 915
BfaI	CTAG	3 cut(s)	203, 1244, 1253
BfmI	CTRYAG	2 cut(s)	423, 600
BfuI	GTATCC	2 cut(s)	410, 1305
BglII	AGATCT	1 cut(s)	1425
BisI	GCNGC	7 cut(s)	600, 912, 996, 1265, 1383, 1386, 1389
BlpI	GCTNAGC	1 cut(s)	198
BlsI	GCNGC	7 cut(s)	601, 913, 997, 1266, 1384, 1387, 1390
BmcAI	AGTACT	1 cut(s)	389
Bme1390I	CCNGG	1 cut(s)	933
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	933
BmrI	ACTGGG	1 cut(s)	1121
BmsI	GCATC	3 cut(s)	219, 322, 437
BmuI	ACTGGG	1 cut(s)	1121
BpmI	CTGGAG	2 cut(s)	51, 189
Bpu1102I	GCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	2 cut(s)	1372, 1406
BsaJI	CCNNGG	4 cut(s)	180, 349, 640, 931
Bsc4I	CCNNNNNNNGG	5 cut(s)	38, 74, 186, 305, 1133
Bse118I	RCCGGY	1 cut(s)	1092
Bse1I	ACTGG	7 cut(s)	121, 670, 694, 952, 977, 1127, 1167
BseBI	CCWGG	1 cut(s)	933
BseDI	CCNNGG	4 cut(s)	180, 349, 640, 931
BseGI	GGATG	6 cut(s)	212, 431, 783, 821, 926, 1005
BseLI	CCNNNNNNNGG	5 cut(s)	38, 74, 186, 305, 1133
BseMII	CTCAG	2 cut(s)	66, 212
BseNI	ACTGG	7 cut(s)	121, 670, 694, 952, 977, 1127, 1167
BseRI	GAGGAG	2 cut(s)	748, 932
BseXI	GCAGC	5 cut(s)	586, 898, 1372, 1375, 1394
BshFI	GGCC	3 cut(s)	102, 639, 1264
BsiHKAI	GWGCWC	2 cut(s)	142, 1328
BsiSI	CCGG	2 cut(s)	291, 1093
BslFI	GGGAC	2 cut(s)	41, 767
BslI	CCNNNNNNNGG	5 cut(s)	38, 74, 186, 305, 1133
BsmAI	GTCTC	2 cut(s)	110, 915
BsmBI	CGTCTC	1 cut(s)	110
BsmFI	GGGAC	2 cut(s)	41, 767
BsnI	GGCC	3 cut(s)	102, 639, 1264
Bsp1286I	GDGCHC	3 cut(s)	142, 1252, 1328
Bsp1720I	GCTNAGC	1 cut(s)	198
BspACI	CCGC	5 cut(s)	155, 818, 996, 1085, 1265
BspANI	GGCC	3 cut(s)	102, 639, 1264
BspCNI	CTCAG	2 cut(s)	65, 211
BspLI	GGNNCC	1 cut(s)	79
BspMAI	CTGCAG	1 cut(s)	604
BspPI	GGATC	4 cut(s)	290, 336, 1204, 1402
BsrBI	CCGCTC	1 cut(s)	1267
BsrFI	RCCGGY	1 cut(s)	1092
BsrI	ACTGG	7 cut(s)	121, 670, 694, 952, 977, 1127, 1167
BssAI	RCCGGY	1 cut(s)	1092
BssECI	CCNNGG	4 cut(s)	180, 349, 640, 931
BssT1I	CCWWGG	3 cut(s)	180, 349, 640
Bst2UI	CCWGG	1 cut(s)	933
Bst4CI	ACNGT	4 cut(s)	124, 1069, 1198, 1273
Bst6I	CTCTTC	2 cut(s)	273, 1160
BstAPI	GCANNNNNTGC	1 cut(s)	1388
BstC8I	GCNNGC	2 cut(s)	280, 1363
BstDEI	CTNAG	2 cut(s)	52, 198
BstF5I	GGATG	6 cut(s)	212, 431, 783, 821, 926, 1005
BstMAI	GTCTC	2 cut(s)	110, 915
BstMWI	GCNNNNNNNGC	4 cut(s)	84, 221, 995, 1388
BstNI	CCWGG	1 cut(s)	933
BstNSI	RCATGY	1 cut(s)	889
BstSCI	CCNGG	1 cut(s)	931
BstSFI	CTRYAG	2 cut(s)	423, 600
BstV1I	GCAGC	5 cut(s)	586, 898, 1372, 1375, 1394
BstX2I	RGATCY	1 cut(s)	1425
BstXI	CCANNNNNNTGG	3 cut(s)	442, 749, 1016
BstYI	RGATCY	1 cut(s)	1425
BsuI	GTATCC	2 cut(s)	410, 1305
BsuRI	GGCC	3 cut(s)	102, 639, 1264
BtsCI	GGATG	6 cut(s)	212, 431, 783, 821, 926, 1005
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	4 cut(s)	714, 865, 945, 1194
Cac8I	GCNNGC	2 cut(s)	280, 1363
CaiI	CAGNNNCTG	3 cut(s)	713, 1388, 1452
Cfr10I	RCCGGY	1 cut(s)	1092
Cfr13I	GGNCC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	388, 1081
CspCI	CAANNNNNGTGG	2 cut(s)	334, 369
CviAII	CATG	8 cut(s)	442, 495, 500, 520, 607, 886, 901, 1207
CviQI	GTAC	2 cut(s)	388, 1081
DdeI	CTNAG	2 cut(s)	52, 198
EaeI	YGGCCR	2 cut(s)	100, 1262
Eam1104I	CTCTTC	2 cut(s)	273, 1160
EarI	CTCTTC	2 cut(s)	273, 1160
Eco130I	CCWWGG	3 cut(s)	180, 349, 640
Eco24I	GRGCYC	1 cut(s)	1252
Eco47I	GGWCC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	1141
EcoRII	CCWGG	1 cut(s)	931
EcoT14I	CCWWGG	3 cut(s)	180, 349, 640
EcoT22I	ATGCAT	1 cut(s)	1054
EcoT38I	GRGCYC	1 cut(s)	1252
ErhI	CCWWGG	3 cut(s)	180, 349, 640
Esp3I	CGTCTC	1 cut(s)	110
FaeI	CATG	8 cut(s)	445, 498, 503, 523, 610, 889, 904, 1210
FaqI	GGGAC	2 cut(s)	41, 767
FatI	CATG	8 cut(s)	441, 494, 499, 519, 606, 885, 900, 1206
FauI	CCCGC	2 cut(s)	825, 1092
Fnu4HI	GCNGC	7 cut(s)	600, 912, 996, 1265, 1383, 1386, 1389
FokI	GGATG	6 cut(s)	219, 418, 770, 808, 913, 992
FriOI	GRGCYC	1 cut(s)	1252
Fsp4HI	GCNGC	7 cut(s)	600, 912, 996, 1265, 1383, 1386, 1389
FspBI	CTAG	3 cut(s)	203, 1244, 1253
GluI	GCNGC	7 cut(s)	600, 912, 996, 1265, 1383, 1386, 1389
GsuI	CTGGAG	2 cut(s)	51, 189
HaeIII	GGCC	3 cut(s)	102, 639, 1264
HapII	CCGG	2 cut(s)	291, 1093
Hin1II	CATG	8 cut(s)	445, 498, 503, 523, 610, 889, 904, 1210
HinfI	GANTC	3 cut(s)	394, 923, 1122
HpaII	CCGG	2 cut(s)	291, 1093
HphI	GGTGA	5 cut(s)	26, 376, 494, 1183, 1366
Hpy166II	GTNNAC	2 cut(s)	505, 1276
Hpy188I	TCNGA	6 cut(s)	308, 341, 632, 826, 1121, 1160
Hpy188III	TCNNGA	6 cut(s)	68, 168, 563, 800, 1423, 1441
Hpy8I	GTNNAC	2 cut(s)	505, 1276
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	2 cut(s)	622, 838
HpyCH4III	ACNGT	4 cut(s)	124, 1069, 1198, 1273
HpyCH4V	TGCA	4 cut(s)	134, 602, 900, 1052
HpyF10VI	GCNNNNNNNGC	4 cut(s)	84, 221, 995, 1388
HpyF3I	CTNAG	2 cut(s)	52, 198
Hsp92II	CATG	8 cut(s)	445, 498, 503, 523, 610, 889, 904, 1210
LmnI	GCTCC	4 cut(s)	83, 704, 735, 1323
Lsp1109I	GCAGC	5 cut(s)	586, 898, 1372, 1375, 1394
LweI	GCATC	3 cut(s)	219, 322, 437
MaeI	CTAG	3 cut(s)	203, 1244, 1253
MaeIII	GTNAC	4 cut(s)	247, 482, 709, 1189
MbiI	CCGCTC	1 cut(s)	1267
MboII	GAAGA	4 cut(s)	260, 853, 952, 1147
MfeI	CAATTG	1 cut(s)	1398
MflI	RGATCY	1 cut(s)	1425
MhlI	GDGCHC	3 cut(s)	142, 1252, 1328
MluCI	AATT	8 cut(s)	159, 369, 450, 463, 558, 795, 1115, 1398
MlyI	GAGTC	2 cut(s)	917, 1116
MmeI	TCCRAC	4 cut(s)	369, 1063, 1144, 1216
Mph1103I	ATGCAT	1 cut(s)	1054
MseI	TTAA	2 cut(s)	27, 453
MslI	CAYNNNNRTG	2 cut(s)	440, 1196
MspA1I	CMGCKG	1 cut(s)	1385
MspI	CCGG	2 cut(s)	291, 1093
MspR9I	CCNGG	1 cut(s)	933
MunI	CAATTG	1 cut(s)	1398
MvaI	CCWGG	1 cut(s)	933
MwoI	GCNNNNNNNGC	4 cut(s)	84, 221, 995, 1388
NlaIII	CATG	8 cut(s)	445, 498, 503, 523, 610, 889, 904, 1210
NlaIV	GGNNCC	1 cut(s)	79
NmuCI	GTSAC	4 cut(s)	247, 482, 709, 1189
NsiI	ATGCAT	1 cut(s)	1054
NspI	RCATGY	1 cut(s)	889
OliI	CACNNNNGTG	1 cut(s)	1196
PciI	ACATGT	1 cut(s)	885
PfeI	GAWTC	1 cut(s)	394
PkrI	GCNGC	7 cut(s)	601, 913, 997, 1266, 1384, 1387, 1390
PleI	GAGTC	2 cut(s)	917, 1116
PpsI	GAGTC	2 cut(s)	917, 1116
PscI	ACATGT	1 cut(s)	885
PsiI	TTATAA	1 cut(s)	1370
Psp6I	CCWGG	1 cut(s)	931
PspGI	CCWGG	1 cut(s)	931
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	218
PstI	CTGCAG	1 cut(s)	604
PstNI	CAGNNNCTG	3 cut(s)	713, 1388, 1452
PsuI	RGATCY	1 cut(s)	1425
PvuII	CAGCTG	1 cut(s)	1385
RsaI	GTAC	2 cut(s)	389, 1082
RsaNI	GTAC	2 cut(s)	388, 1081
RseI	CAYNNNNRTG	2 cut(s)	440, 1196
SaqAI	TTAA	2 cut(s)	27, 453
SatI	GCNGC	7 cut(s)	600, 912, 996, 1265, 1383, 1386, 1389
Sau96I	GGNCC	1 cut(s)	218
ScaI	AGTACT	1 cut(s)	389
SchI	GAGTC	2 cut(s)	917, 1116
ScrFI	CCNGG	1 cut(s)	933
SduI	GDGCHC	3 cut(s)	142, 1252, 1328
SfaNI	GCATC	3 cut(s)	219, 322, 437
SfcI	CTRYAG	2 cut(s)	423, 600
SinI	GGWCC	1 cut(s)	218
SmiMI	CAYNNNNRTG	2 cut(s)	440, 1196
SmlI	CTYRAG	2 cut(s)	1351, 1421
SmoI	CTYRAG	2 cut(s)	1351, 1421
Sse9I	AATT	8 cut(s)	159, 369, 450, 463, 558, 795, 1115, 1398
SsiI	CCGC	5 cut(s)	155, 818, 996, 1085, 1265
SspMI	CTAG	3 cut(s)	203, 1244, 1253
StyD4I	CCNGG	1 cut(s)	931
StyI	CCWWGG	3 cut(s)	180, 349, 640
TaaI	ACNGT	4 cut(s)	124, 1069, 1198, 1273
TaqI	TCGA	2 cut(s)	570, 981
TasI	AATT	8 cut(s)	159, 369, 450, 463, 558, 795, 1115, 1398
TatI	WGTACW	1 cut(s)	387
TauI	GCSGC	2 cut(s)	998, 1267
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	2 cut(s)	27, 453
Tru9I	TTAA	2 cut(s)	27, 453
TscAI	CASTG	4 cut(s)	714, 865, 952, 1201
TseFI	GTSAC	4 cut(s)	247, 482, 709, 1189
TseI	GCWGC	5 cut(s)	599, 911, 1382, 1385, 1388
Tsp45I	GTSAC	4 cut(s)	247, 482, 709, 1189
TspDTI	ATGAA	2 cut(s)	854, 1087
TspRI	CASTG	4 cut(s)	714, 865, 952, 1201
VpaK11BI	GGWCC	1 cut(s)	218
XapI	RAATTY	4 cut(s)	369, 558, 795, 1115
XceI	RCATGY	1 cut(s)	889
XcmI	CCANNNNNNNNNTGG	2 cut(s)	442, 1352
XspI	CTAG	3 cut(s)	203, 1244, 1253
ZrmI	AGTACT	1 cut(s)	389
Zsp2I	ATGCAT	1 cut(s)	1054

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.