RLG00000011687

Amino acid permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001778
Physical Location & Seq
Reverse (-)
11691126 .. 11692460
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011687

Sequence Viewer

Length: 837 bp
ATGGTGGACAACACTGCTTCAAGGAACCATATTCATTCCAACCCAGCTTTTGATGCCTCAGTTATGGATGGAGGCTCCAAGTTCTTTGATGATGATGGCCGTCCCAAAAGGACTGGAAATGTTATGACTGCAAGTGCTCACATAATTACTGCTGTGATTGGTTCTGGGGTTTTGTCATTGGCTTGGGCCATTGCTCAGCTTGGCTGGGTTGTTGGTCCTGTTGTGATGGTCATGTTTTCCTTAGTGACCTACTACACTTCATGTCTTCTCGTTGCCTGCTATCGTGACCCCGTCACTGGAAAAAGAAACTCTACTTACTCGGCTGCTGTTCGAAACCACCTTGGTGGACTTAAGTACAAAGTTCTTGGAATAGTTCAGCGCGTGAACCTTTTCGGAATCACCATTGGCTACACCATAACAGCATGTATAAGCATGGTTGCAATACAAAGGAATTCCTGCTTGCACAAGAGTGGTGGAGAAAAACCATGCCCGGTAAACAGCAATCCCTATATGATTGCTTTTGGCATCACAGAAATTATATTATCTCAAATTCCAAATTTCGATAAGTTGTGGTGGCTATCTACCGTTGCTGCAGTCATGTCATTTACATACTCAGGGATTGGACTTGCCCTTGGAATTGCTAAAGTTGCAGAAAGTGGAACAATGAAGGGAACTCTTACTGGAGTACGCATTGGAATTCATGTGACTCAAACCGAAAAGATATGGAGGATCTTCCAGGCACTTGGTGACATAGCTTTTGCTTACTCATTTGCTATAGTCCTCATTGAAATTGAGGTCTATATCTCCTTTGAGATTCCCATAGTTACTACTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

279

Amino Acids

30.1

Weight (kDa)

8.94

Isoelectric Point (pI)

33.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 38 - 265 3.6e-58 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 381
AclWI GGATC 1 cut(s) 737
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 4 cut(s) 451, 549, 556, 696
AdeI CACNNNGTG 1 cut(s) 746
AfaI GTAC 2 cut(s) 356, 687
AfiI CCNNNNNNNGG 1 cut(s) 296
AflII CTTAAG 1 cut(s) 350
AgsI TTSAA 2 cut(s) 21, 788
AjnI CCWGG 1 cut(s) 735
AleI CACNNNNGTG 2 cut(s) 342, 468
AluBI AGCT 3 cut(s) 47, 199, 755
AluI AGCT 3 cut(s) 47, 199, 755
Alw21I GWGCWC 1 cut(s) 139
AlwI GGATC 1 cut(s) 737
AoxI GGCC 2 cut(s) 97, 186
ApeKI GCWGC 2 cut(s) 323, 590
ApoI RAATTY 4 cut(s) 451, 549, 556, 696
ArsI GACNNNNNNTTYG 2 cut(s) 740, 772
Asp700I GAANNNNTTC 1 cut(s) 389
AspLEI GCGC 1 cut(s) 381
AspS9I GGNCC 2 cut(s) 186, 215
AsuC2I CCSGG 1 cut(s) 491
AsuHPI GGTGA 2 cut(s) 391, 758
AsuII TTCGAA 1 cut(s) 331
AvaII GGWCC 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 257
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 2 cut(s) 310, 577
BccI CCATC 3 cut(s) 62, 89, 220
BceAI ACGGC 1 cut(s) 84
BciT130I CCWGG 1 cut(s) 737
BcnI CCSGG 1 cut(s) 491
BfmI CTRYAG 2 cut(s) 591, 774
BfrI CTTAAG 1 cut(s) 350
BisI GCNGC 2 cut(s) 324, 591
BlpI GCTNAGC 1 cut(s) 195
BlsI GCNGC 2 cut(s) 325, 592
Bme1390I CCNGG 2 cut(s) 491, 737
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 2 cut(s) 186, 215
BmiI GGNNCC 2 cut(s) 26, 76
BmrFI CCNGG 2 cut(s) 491, 737
BmsI GCATC 2 cut(s) 43, 534
BpiI GAAGAC 1 cut(s) 257
BpmI CTGGAG 1 cut(s) 702
Bpu1102I GCTNAGC 1 cut(s) 195
Bpu14I TTCGAA 1 cut(s) 331
BpuMI CCSGG 1 cut(s) 491
BsaJI CCNNGG 2 cut(s) 340, 631
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse1I ACTGG 3 cut(s) 118, 301, 685
Bse3DI GCAATG 1 cut(s) 189
BseBI CCWGG 1 cut(s) 737
BseDI CCNNGG 2 cut(s) 340, 631
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 3 cut(s) 72, 209, 627
BseNI ACTGG 3 cut(s) 118, 301, 685
BseXI GCAGC 2 cut(s) 310, 577
BseYI CCCAGC 2 cut(s) 43, 204
Bsh1236I CGCG 1 cut(s) 381
BshFI GGCC 2 cut(s) 99, 188
BsiHKAI GWGCWC 1 cut(s) 139
BsiSI CCGG 1 cut(s) 491
BslFI GGGAC 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 87
BsnI GGCC 2 cut(s) 99, 188
Bsp119I TTCGAA 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 1 cut(s) 729
Bsp1720I GCTNAGC 1 cut(s) 195
BspANI GGCC 2 cut(s) 99, 188
BspCNI CTCAG 3 cut(s) 71, 208, 626
BspFNI CGCG 1 cut(s) 381
BspLI GGNNCC 2 cut(s) 26, 76
BspMAI CTGCAG 1 cut(s) 595
BspPI GGATC 1 cut(s) 737
BspT104I TTCGAA 1 cut(s) 331
BspTI CTTAAG 1 cut(s) 350
BsrDI GCAATG 1 cut(s) 189
BsrI ACTGG 3 cut(s) 118, 301, 685
BssECI CCNNGG 2 cut(s) 340, 631
BssMI GATC 1 cut(s) 729
BssT1I CCWWGG 2 cut(s) 340, 631
Bst2UI CCWGG 1 cut(s) 737
Bst4CI ACNGT 1 cut(s) 586
BstAFI CTTAAG 1 cut(s) 350
BstBI TTCGAA 1 cut(s) 331
BstC8I GCNNGC 2 cut(s) 277, 461
BstDEI CTNAG 4 cut(s) 58, 195, 241, 613
BstF5I GGATG 1 cut(s) 73
BstFNI CGCG 1 cut(s) 381
BstHHI GCGC 1 cut(s) 381
BstKTI GATC 1 cut(s) 732
BstMBI GATC 1 cut(s) 729
BstMWI GCNNNNNNNGC 2 cut(s) 53, 647
BstNI CCWGG 1 cut(s) 737
BstNSI RCATGY 1 cut(s) 426
BstSCI CCNGG 2 cut(s) 489, 735
BstSFI CTRYAG 2 cut(s) 591, 774
BstUI CGCG 1 cut(s) 381
BstV1I GCAGC 2 cut(s) 310, 577
BstV2I GAAGAC 1 cut(s) 257
BstX2I RGATCY 1 cut(s) 729
BstXI CCANNNNNNTGG 2 cut(s) 344, 743
BstYI RGATCY 1 cut(s) 729
BsuRI GGCC 2 cut(s) 99, 188
BtsCI GGATG 1 cut(s) 73
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 2 cut(s) 12, 294
Cac8I GCNNGC 2 cut(s) 277, 461
CfoI GCGC 1 cut(s) 381
Cfr13I GGNCC 2 cut(s) 186, 215
Csp6I GTAC 2 cut(s) 355, 686
CspCI CAANNNNNGTGG 2 cut(s) 454, 489
CviAII CATG 7 cut(s) 232, 261, 423, 433, 486, 598, 701
CviQI GTAC 2 cut(s) 355, 686
DdeI CTNAG 4 cut(s) 58, 195, 241, 613
DpnI GATC 1 cut(s) 731
DpnII GATC 1 cut(s) 729
DraIII CACNNNGTG 1 cut(s) 746
EaeI YGGCCR 1 cut(s) 97
Eco130I CCWWGG 2 cut(s) 340, 631
Eco47I GGWCC 1 cut(s) 215
EcoRI GAATTC 2 cut(s) 451, 696
EcoRII CCWGG 1 cut(s) 735
EcoT14I CCWWGG 2 cut(s) 340, 631
ErhI CCWWGG 2 cut(s) 340, 631
FaeI CATG 7 cut(s) 235, 264, 426, 436, 489, 601, 704
FaqI GGGAC 1 cut(s) 87
FatI CATG 7 cut(s) 231, 260, 422, 432, 485, 597, 700
Fnu4HI GCNGC 2 cut(s) 324, 591
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 2 cut(s) 324, 591
GlaI GCGC 1 cut(s) 380
GluI GCNGC 2 cut(s) 324, 591
GsaI CCCAGC 2 cut(s) 47, 208
GsuI CTGGAG 1 cut(s) 702
HaeIII GGCC 2 cut(s) 99, 188
HapII CCGG 1 cut(s) 491
HhaI GCGC 1 cut(s) 381
Hin1II CATG 7 cut(s) 235, 264, 426, 436, 489, 601, 704
Hin6I GCGC 1 cut(s) 379
HinP1I GCGC 1 cut(s) 379
HinfI GANTC 3 cut(s) 396, 706, 814
HpaII CCGG 1 cut(s) 491
HphI GGTGA 2 cut(s) 391, 758
Hpy166II GTNNAC 4 cut(s) 7, 347, 385, 496
Hpy188I TCNGA 1 cut(s) 395
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 4 cut(s) 7, 347, 385, 496
HpyAV CCTTC 1 cut(s) 661
HpyCH4III ACNGT 1 cut(s) 586
HpyCH4V TGCA 5 cut(s) 131, 440, 463, 593, 650
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 647
HpyF3I CTNAG 4 cut(s) 58, 195, 241, 613
Hsp92II CATG 7 cut(s) 235, 264, 426, 436, 489, 601, 704
HspAI GCGC 1 cut(s) 379
Kzo9I GATC 1 cut(s) 729
LmnI GCTCC 1 cut(s) 80
Lsp1109I GCAGC 2 cut(s) 310, 577
LweI GCATC 2 cut(s) 43, 534
MaeIII GTNAC 6 cut(s) 244, 284, 292, 703, 746, 823
MalI GATC 1 cut(s) 731
MboI GATC 1 cut(s) 729
MboII GAAGA 2 cut(s) 257, 724
MflI RGATCY 1 cut(s) 729
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 8 cut(s) 144, 451, 534, 549, 556, 636, 696, 789
MlyI GAGTC 1 cut(s) 700
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 5 cut(s) 65, 67, 720, 787, 791
MroXI GAANNNNTTC 1 cut(s) 389
MseI TTAA 2 cut(s) 351, 835
MslI CAYNNNNRTG 2 cut(s) 342, 468
MspCI CTTAAG 1 cut(s) 350
MspI CCGG 1 cut(s) 491
MspR9I CCNGG 2 cut(s) 491, 737
MvaI CCWGG 1 cut(s) 737
MvnI CGCG 1 cut(s) 381
MwoI GCNNNNNNNGC 2 cut(s) 53, 647
NciI CCSGG 1 cut(s) 491
NdeII GATC 1 cut(s) 729
NlaIII CATG 7 cut(s) 235, 264, 426, 436, 489, 601, 704
NlaIV GGNNCC 2 cut(s) 26, 76
NmeAIII GCCGAG 1 cut(s) 299
NmuCI GTSAC 5 cut(s) 244, 284, 292, 703, 746
NspI RCATGY 1 cut(s) 426
NspV TTCGAA 1 cut(s) 331
OliI CACNNNNGTG 2 cut(s) 342, 468
PdmI GAANNNNTTC 1 cut(s) 389
PfeI GAWTC 2 cut(s) 396, 814
PflFI GACNNNGTC 1 cut(s) 290
PkrI GCNGC 2 cut(s) 325, 592
PleI GAGTC 1 cut(s) 700
PpsI GAGTC 1 cut(s) 700
Psp6I CCWGG 1 cut(s) 735
PspFI CCCAGC 2 cut(s) 43, 204
PspGI CCWGG 1 cut(s) 735
PspN4I GGNNCC 2 cut(s) 26, 76
PspPI GGNCC 2 cut(s) 186, 215
PstI CTGCAG 1 cut(s) 595
PsuI RGATCY 1 cut(s) 729
PsyI GACNNNGTC 1 cut(s) 290
RsaI GTAC 2 cut(s) 356, 687
RsaNI GTAC 2 cut(s) 355, 686
RseI CAYNNNNRTG 2 cut(s) 342, 468
SaqAI TTAA 2 cut(s) 351, 835
SatI GCNGC 2 cut(s) 324, 591
Sau3AI GATC 1 cut(s) 729
Sau96I GGNCC 2 cut(s) 186, 215
SchI GAGTC 1 cut(s) 700
ScrFI CCNGG 2 cut(s) 491, 737
SduI GDGCHC 1 cut(s) 139
SetI ASST 7 cut(s) 49, 201, 251, 342, 390, 757, 798
SfaNI GCATC 2 cut(s) 43, 534
SfcI CTRYAG 2 cut(s) 591, 774
SfuI TTCGAA 1 cut(s) 331
SinI GGWCC 1 cut(s) 215
SmiMI CAYNNNNRTG 2 cut(s) 342, 468
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 8 cut(s) 144, 451, 534, 549, 556, 636, 696, 789
StyD4I CCNGG 2 cut(s) 489, 735
StyI CCWWGG 2 cut(s) 340, 631
TaaI ACNGT 1 cut(s) 586
TaqI TCGA 2 cut(s) 331, 561
TasI AATT 8 cut(s) 144, 451, 534, 549, 556, 636, 696, 789
TatI WGTACW 1 cut(s) 354
TfiI GAWTC 2 cut(s) 396, 814
Tru1I TTAA 2 cut(s) 351, 835
Tru9I TTAA 2 cut(s) 351, 835
TscAI CASTG 2 cut(s) 19, 301
TseFI GTSAC 5 cut(s) 244, 284, 292, 703, 746
TseI GCWGC 2 cut(s) 323, 590
Tsp45I GTSAC 5 cut(s) 244, 284, 292, 703, 746
TspDTI ATGAA 4 cut(s) 23, 249, 680, 689
TspRI CASTG 2 cut(s) 19, 301
Tth111I GACNNNGTC 1 cut(s) 290
Vha464I CTTAAG 1 cut(s) 350
VpaK11BI GGWCC 1 cut(s) 215
XapI RAATTY 4 cut(s) 451, 549, 556, 696
XceI RCATGY 1 cut(s) 426
XmnI GAANNNNTTC 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.