AT1G16810

Eukaryotic family of unknown function (DUF1754)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002762
Physical Location & Seq
Forward (+)
5755588 .. 5756895
1308 bp
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UTR
Exon/CDS
Intron
AT1G16810.1

Sequence Viewer

Length: 435 bp
ATGTCGGCATACGACAATGTTATTGGTGGGAAGCTAAAGCTAAAAGGGAAGGCTTTGGATGTGAAAGCAGGTGGAGTAAAGAAGAAGAAGAAACATAAGAGACAGGAAGAACAAGCTCTTAAAATTACTGATCATGAACTCATAGAAGGAGAAAGCACTGAAGCATTGGGTAAATTGATTGAAGGAGAAGAAGGAGATGAAGAAATGAACAGGAGTGAAAAGGCAAGCGAGGATGCGAAGTTGCAGCAGCAGCTCGATGATGATGATCACTTAACGCCAGCAGAAAGGCGATACATAGAGCAGAAACAAAGATTGGATGTGCAGAAGCTAGCTAAGGAAGCGAACAAGTCTCACCGTAACAGGATTGAGGATTTCAATCAGTATCTGGCTAACATGAGTGAGCACTACGATATCCCTAAAGTCGGACCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1754

Protein Analysis

144

Amino Acids

16.38

Weight (kDa)

6.0

Isoelectric Point (pI)

66.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAM32A PF08555 3 - 105 1.6e-17 FAM32A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 59
Acc36I ACCTGC 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 180
AfiI CCNNNNNNNGG 1 cut(s) 422
AgsI TTSAA 2 cut(s) 182, 376
AjnI CCWGG 1 cut(s) 427
AjuI GAANNNNNNNTTGG 2 cut(s) 296, 328
AluBI AGCT 6 cut(s) 34, 40, 116, 253, 328, 332
AluI AGCT 6 cut(s) 34, 40, 116, 253, 328, 332
Alw21I GWGCWC 1 cut(s) 405
Alw26I GTCTC 2 cut(s) 94, 354
AlwNI CAGNNNCTG 1 cut(s) 385
ApeKI GCWGC 3 cut(s) 244, 247, 250
AspS9I GGNCC 1 cut(s) 425
AsuHPI GGTGA 1 cut(s) 344
AsuNHI GCTAGC 1 cut(s) 328
AvaII GGWCC 1 cut(s) 425
Bbv12I GWGCWC 1 cut(s) 405
BbvI GCAGC 3 cut(s) 256, 259, 262
BciT130I CCWGG 1 cut(s) 429
BclI TGATCA 2 cut(s) 130, 265
BcoDI GTCTC 2 cut(s) 94, 354
BfaI CTAG 1 cut(s) 329
BfuAI ACCTGC 1 cut(s) 59
BisI GCNGC 3 cut(s) 245, 248, 251
BlsI GCNGC 3 cut(s) 246, 249, 252
Bme1390I CCNGG 1 cut(s) 429
Bme18I GGWCC 1 cut(s) 425
BmgT120I GGNCC 1 cut(s) 425
BmrFI CCNGG 1 cut(s) 429
BmsI GCATC 1 cut(s) 223
BmtI GCTAGC 1 cut(s) 332
Bpu10I CCTNAGC 1 cut(s) 333
BsaBI GATNNNNATC 2 cut(s) 264, 375
Bsc4I CCNNNNNNNGG 1 cut(s) 422
Bse8I GATNNNNATC 2 cut(s) 264, 375
BseBI CCWGG 1 cut(s) 429
BseGI GGATG 3 cut(s) 64, 238, 322
BseJI GATNNNNATC 2 cut(s) 264, 375
BseLI CCNNNNNNNGG 1 cut(s) 422
BseXI GCAGC 3 cut(s) 256, 259, 262
BsgI GTGCAG 1 cut(s) 341
BsiHKAI GWGCWC 1 cut(s) 405
BslI CCNNNNNNNGG 1 cut(s) 422
BsmAI GTCTC 2 cut(s) 94, 354
Bsp1286I GDGCHC 1 cut(s) 405
Bsp143I GATC 2 cut(s) 130, 265
BspHI TCATGA 1 cut(s) 133
BspMI ACCTGC 1 cut(s) 59
BspOI GCTAGC 1 cut(s) 332
BssMI GATC 2 cut(s) 130, 265
Bst2UI CCWGG 1 cut(s) 429
Bst4CI ACNGT 1 cut(s) 356
BstC8I GCNNGC 3 cut(s) 226, 279, 330
BstDEI CTNAG 1 cut(s) 333
BstF5I GGATG 3 cut(s) 64, 238, 322
BstKTI GATC 2 cut(s) 133, 268
BstMAI GTCTC 2 cut(s) 94, 354
BstMBI GATC 2 cut(s) 130, 265
BstMWI GCNNNNNNNGC 2 cut(s) 250, 338
BstNI CCWGG 1 cut(s) 429
BstSCI CCNGG 1 cut(s) 427
BstV1I GCAGC 3 cut(s) 256, 259, 262
BtsCI GGATG 3 cut(s) 64, 238, 322
BtsIMutI CAGTG 1 cut(s) 156
BveI ACCTGC 1 cut(s) 59
Cac8I GCNNGC 3 cut(s) 226, 279, 330
CaiI CAGNNNCTG 1 cut(s) 385
CciI TCATGA 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 425
CsiI ACCWGGT 1 cut(s) 427
CviAII CATG 2 cut(s) 134, 394
CviJI RGCY 8 cut(s) 34, 40, 53, 116, 253, 328, 332, 389
CviKI_1 RGCY 8 cut(s) 34, 40, 53, 116, 253, 328, 332, 389
DdeI CTNAG 1 cut(s) 333
DpnI GATC 2 cut(s) 132, 267
DpnII GATC 2 cut(s) 130, 265
Eco32I GATATC 1 cut(s) 412
Eco47I GGWCC 1 cut(s) 425
Eco57I CTGAAG 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 427
EcoRV GATATC 1 cut(s) 412
FaeI CATG 2 cut(s) 137, 397
FaiI YATR 6 cut(s) 10, 96, 135, 143, 296, 395
FatI CATG 2 cut(s) 133, 393
FbaI TGATCA 2 cut(s) 130, 265
Fnu4HI GCNGC 3 cut(s) 245, 248, 251
FokI GGATG 3 cut(s) 71, 245, 329
Fsp4HI GCNGC 3 cut(s) 245, 248, 251
FspBI CTAG 1 cut(s) 329
GluI GCNGC 3 cut(s) 245, 248, 251
Hin1II CATG 2 cut(s) 137, 397
HphI GGTGA 1 cut(s) 344
Hpy188I TCNGA 1 cut(s) 425
Hpy188III TCNNGA 1 cut(s) 134
HpyAV CCTTC 4 cut(s) 43, 140, 176, 185
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4V TGCA 2 cut(s) 244, 322
HpyF10VI GCNNNNNNNGC 2 cut(s) 250, 338
HpyF3I CTNAG 1 cut(s) 333
Hsp92II CATG 2 cut(s) 137, 397
Ksp22I TGATCA 2 cut(s) 130, 265
Kzo9I GATC 2 cut(s) 130, 265
LpnPI CCDG 7 cut(s) 54, 89, 196, 291, 346, 371, 414
Lsp1109I GCAGC 3 cut(s) 256, 259, 262
LweI GCATC 1 cut(s) 223
MabI ACCWGGT 1 cut(s) 427
MaeI CTAG 1 cut(s) 329
MaeIII GTNAC 1 cut(s) 356
MalI GATC 2 cut(s) 132, 267
MboI GATC 2 cut(s) 130, 265
MboII GAAGA 6 cut(s) 94, 97, 100, 119, 200, 212
MhlI GDGCHC 1 cut(s) 405
MluCI AATT 2 cut(s) 123, 173
MmeI TCCRAC 1 cut(s) 403
MnlI CCTC 2 cut(s) 223, 361
MseI TTAA 3 cut(s) 120, 272, 433
MspR9I CCNGG 1 cut(s) 429
MvaI CCWGG 1 cut(s) 429
MwoI GCNNNNNNNGC 2 cut(s) 250, 338
NdeII GATC 2 cut(s) 130, 265
NheI GCTAGC 1 cut(s) 328
NlaIII CATG 2 cut(s) 137, 397
PagI TCATGA 1 cut(s) 133
PaqCI CACCTGC 1 cut(s) 59
PkrI GCNGC 3 cut(s) 246, 249, 252
Psp6I CCWGG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 427
PspPI GGNCC 1 cut(s) 425
PstNI CAGNNNCTG 1 cut(s) 385
SaqAI TTAA 3 cut(s) 120, 272, 433
SatI GCNGC 3 cut(s) 245, 248, 251
Sau3AI GATC 2 cut(s) 130, 265
Sau96I GGNCC 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 429
SduI GDGCHC 1 cut(s) 405
SetI ASST 8 cut(s) 36, 42, 73, 118, 255, 330, 334, 430
SexAI ACCWGGT 1 cut(s) 427
SfaNI GCATC 1 cut(s) 223
SinI GGWCC 1 cut(s) 425
Sse9I AATT 2 cut(s) 123, 173
SspMI CTAG 1 cut(s) 329
StyD4I CCNGG 1 cut(s) 427
TaaI ACNGT 1 cut(s) 356
TaqI TCGA 1 cut(s) 255
TasI AATT 2 cut(s) 123, 173
Tru1I TTAA 3 cut(s) 120, 272, 433
Tru9I TTAA 3 cut(s) 120, 272, 433
TscAI CASTG 1 cut(s) 163
TseI GCWGC 3 cut(s) 244, 247, 250
TspDTI ATGAA 3 cut(s) 150, 213, 221
TspRI CASTG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 425
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.