RchiOBHm_Chr2g0149551

Eukaryotic family of unknown function (DUF1754)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002762
Physical Location & Seq
Reverse (-)
67376598 .. 67378755
2158 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51895

Sequence Viewer

Length: 411 bp
ATGTCGTCATATGAGAATGTCGTTGGTGGGAAGCTCAAGCTTAAGGGAAAGGCTCTGGATGTGAAGGCTGCTGGGATTAAGAAGAAAAAGAAACATAAGAAACATCAAGATCAAATTTCTCTTGTCACAGAAAAGGAGCTCGCAGCTGGGGGAAGTACAGAAGAGTTGACCAATCCTGATGAGGAAGATATGAATGATGACAACAAATCAAGAGAGGATGGGAAGGCTGCTAGTTATGACGAATATTTGACGCCTGCAGAGAGACGATATATAGAACAGAGAGAGCAAATTGATAATCACAGGTTGGCCAAGACTGCAAATAAATCACACCGTGACAGAATTCAAGACTTCAACCAGTATCTGGCCAACATGAGTGAGCATTATGACATTCCTAAAGTTGGTCCAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko01100 ko01110 map00100 map01100 map01110
Pfam Domains
Protein Families
DUF1754 ERG4_ERG24

Protein Analysis

136

Amino Acids

15.44

Weight (kDa)

6.98

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAM32A PF08555 4 - 99 3.9e-15 FAM32A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 361
AcoI YGGCCR 2 cut(s) 306, 363
AcsI RAATTY 2 cut(s) 114, 339
AcyI GRCGYC 1 cut(s) 251
AdeI CACNNNGTG 1 cut(s) 332
AfaI GTAC 1 cut(s) 157
AfiI CCNNNNNNNGG 2 cut(s) 361, 398
AflII CTTAAG 1 cut(s) 41
AgsI TTSAA 2 cut(s) 344, 352
AjnI CCWGG 1 cut(s) 403
AluBI AGCT 4 cut(s) 34, 40, 139, 146
AluI AGCT 4 cut(s) 34, 40, 139, 146
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 256
AlwNI CAGNNNCTG 1 cut(s) 361
AoxI GGCC 2 cut(s) 306, 363
ApeKI GCWGC 3 cut(s) 68, 143, 227
ApoI RAATTY 2 cut(s) 114, 339
AspS9I GGNCC 1 cut(s) 401
AvaII GGWCC 1 cut(s) 401
BalI TGGCCA 2 cut(s) 308, 365
BanII GRGCYC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 3 cut(s) 55, 155, 214
BccI CCATC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 405
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 1 cut(s) 231
BfmI CTRYAG 1 cut(s) 255
BfrI CTTAAG 1 cut(s) 41
BisI GCNGC 3 cut(s) 69, 144, 228
BlsI GCNGC 3 cut(s) 70, 145, 229
Bme1390I CCNGG 1 cut(s) 405
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 1 cut(s) 401
BmrFI CCNGG 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 251
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 398
Bse1I ACTGG 1 cut(s) 355
BseBI CCWGG 1 cut(s) 405
BseGI GGATG 2 cut(s) 64, 223
BseLI CCNNNNNNNGG 2 cut(s) 361, 398
BseNI ACTGG 1 cut(s) 355
BseXI GCAGC 3 cut(s) 55, 155, 214
BseYI CCCAGC 2 cut(s) 71, 146
BshFI GGCC 2 cut(s) 308, 365
BsiHKAI GWGCWC 1 cut(s) 141
BslI CCNNNNNNNGG 2 cut(s) 361, 398
BsmAI GTCTC 1 cut(s) 256
BsmBI CGTCTC 1 cut(s) 256
BsnI GGCC 2 cut(s) 308, 365
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 1 cut(s) 109
BspANI GGCC 2 cut(s) 308, 365
BspMAI CTGCAG 1 cut(s) 259
BspTI CTTAAG 1 cut(s) 41
BsrI ACTGG 1 cut(s) 355
BssMI GATC 1 cut(s) 109
BssNI GRCGYC 1 cut(s) 251
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 1 cut(s) 332
Bst6I CTCTTC 1 cut(s) 156
BstACI GRCGYC 1 cut(s) 251
BstAFI CTTAAG 1 cut(s) 41
BstC8I GCNNGC 2 cut(s) 141, 255
BstF5I GGATG 2 cut(s) 64, 223
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNI CCWGG 1 cut(s) 405
BstSCI CCNGG 1 cut(s) 403
BstSFI CTRYAG 1 cut(s) 255
BstV1I GCAGC 3 cut(s) 55, 155, 214
BsuRI GGCC 2 cut(s) 308, 365
BtsCI GGATG 2 cut(s) 64, 223
Cac8I GCNNGC 2 cut(s) 141, 255
CaiI CAGNNNCTG 1 cut(s) 361
Cfr13I GGNCC 1 cut(s) 401
CseI GACGC 1 cut(s) 259
Csp6I GTAC 1 cut(s) 156
CviAII CATG 1 cut(s) 370
CviQI GTAC 1 cut(s) 156
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
DraIII CACNNNGTG 1 cut(s) 332
EaeI YGGCCR 2 cut(s) 306, 363
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Ecl136II GAGCTC 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 401
Eco53kI GAGCTC 1 cut(s) 139
EcoICRI GAGCTC 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 403
EcoT38I GRGCYC 1 cut(s) 141
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 1 cut(s) 373
FaiI YATR 9 cut(s) 10, 12, 96, 191, 237, 270, 272, 371, 384
FatI CATG 1 cut(s) 369
FauNDI CATATG 1 cut(s) 10
Fnu4HI GCNGC 3 cut(s) 69, 144, 228
FokI GGATG 2 cut(s) 71, 230
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 3 cut(s) 69, 144, 228
FspBI CTAG 1 cut(s) 231
GluI GCNGC 3 cut(s) 69, 144, 228
GsaI CCCAGC 2 cut(s) 75, 150
HaeIII GGCC 2 cut(s) 308, 365
HgaI GACGC 1 cut(s) 259
Hin1I GRCGYC 1 cut(s) 251
Hin1II CATG 1 cut(s) 373
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HindIII AAGCTT 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 168
Hpy188III TCNNGA 5 cut(s) 56, 107, 176, 210, 344
Hpy8I GTNNAC 1 cut(s) 168
HpyAV CCTTC 2 cut(s) 58, 217
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4V TGCA 2 cut(s) 257, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
Hsp92I GRCGYC 1 cut(s) 251
Hsp92II CATG 1 cut(s) 373
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 9 cut(s) 41, 57, 132, 189, 267, 286, 347, 368, 390
Lsp1109I GCAGC 3 cut(s) 55, 155, 214
MaeI CTAG 1 cut(s) 231
MaeIII GTNAC 2 cut(s) 124, 332
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 3 cut(s) 94, 173, 197
MhlI GDGCHC 1 cut(s) 141
MlsI TGGCCA 2 cut(s) 308, 365
MluCI AATT 3 cut(s) 114, 288, 339
MluNI TGGCCA 2 cut(s) 308, 365
MnlI CCTC 2 cut(s) 175, 208
Mox20I TGGCCA 2 cut(s) 308, 365
MscI TGGCCA 2 cut(s) 308, 365
MseI TTAA 2 cut(s) 42, 78
Msp20I TGGCCA 2 cut(s) 308, 365
MspA1I CMGCKG 1 cut(s) 146
MspCI CTTAAG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 405
MvaI CCWGG 1 cut(s) 405
MwoI GCNNNNNNNGC 1 cut(s) 314
NdeI CATATG 1 cut(s) 10
NdeII GATC 1 cut(s) 109
NlaIII CATG 1 cut(s) 373
NmuCI GTSAC 2 cut(s) 124, 332
PflMI CCANNNNNTGG 1 cut(s) 361
PkrI GCNGC 3 cut(s) 70, 145, 229
Psp124BI GAGCTC 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 403
PspFI CCCAGC 2 cut(s) 71, 146
PspGI CCWGG 1 cut(s) 403
PspPI GGNCC 1 cut(s) 401
PstI CTGCAG 1 cut(s) 259
PstNI CAGNNNCTG 1 cut(s) 361
PvuII CAGCTG 1 cut(s) 146
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
SacI GAGCTC 1 cut(s) 141
SaqAI TTAA 2 cut(s) 42, 78
SatI GCNGC 3 cut(s) 69, 144, 228
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 401
ScrFI CCNGG 1 cut(s) 405
SduI GDGCHC 1 cut(s) 141
SetI ASST 5 cut(s) 36, 42, 141, 148, 305
SfcI CTRYAG 1 cut(s) 255
SinI GGWCC 1 cut(s) 401
SmlI CTYRAG 2 cut(s) 35, 41
SmoI CTYRAG 2 cut(s) 35, 41
Sse9I AATT 3 cut(s) 114, 288, 339
SspI AATATT 1 cut(s) 245
SspMI CTAG 1 cut(s) 231
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 403
TaaI ACNGT 1 cut(s) 332
TasI AATT 3 cut(s) 114, 288, 339
TatI WGTACW 1 cut(s) 155
Tru1I TTAA 2 cut(s) 42, 78
Tru9I TTAA 2 cut(s) 42, 78
TseFI GTSAC 2 cut(s) 124, 332
TseI GCWGC 3 cut(s) 68, 143, 227
Tsp45I GTSAC 2 cut(s) 124, 332
TspDTI ATGAA 1 cut(s) 206
Van91I CCANNNNNTGG 1 cut(s) 361
Vha464I CTTAAG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 401
XapI RAATTY 2 cut(s) 114, 339
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.