Rw6G044440

Eukaryotic family of unknown function (DUF1754)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002762
Physical Location & Seq
Reverse (-)
67596139 .. 67596810
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G044440.1

Sequence Viewer

Length: 369 bp
ATGTCTGCTTACGATAACGTGGTGATTGGGAAGCTGAAGCTGAAAGGCAAAGCCTTGAACGTGAAAGGTGGGATCAAAAAGAAGAAGACGAAGCACAGCAAACGCTACGGGTATGACCAATCTCTTCAAGCCTCAAAAGATGCAATAGATCAATTTGAGAATGATGGTGATGACGACATAGGGAAGGCTGGAGTTTTTGATCAGATGACACCGGCGGAGCGGCGATATCTCGAGCAGGCAGAGAGGCTTCAAGCTCAAAGGCTTGCCCAAATGGCCAAGAAATCGCATCGTGATCGGGTTCAGGAATTCAATCAGTATCTGGCTAACCTATCTGAGCATTACGACATCCCCAAAGTAGGCCCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1754

Protein Analysis

122

Amino Acids

13.83

Weight (kDa)

9.47

Isoelectric Point (pI)

33.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAM32A PF08555 3 - 85 6.4e-12 FAM32A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 220
AciI CCGC 2 cut(s) 215, 220
AclWI GGATC 1 cut(s) 80
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 1 cut(s) 305
AcuI CTGAAG 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 356
AgsI TTSAA 4 cut(s) 58, 128, 251, 310
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 3 cut(s) 34, 40, 254
AluI AGCT 3 cut(s) 34, 40, 254
AlwI GGATC 1 cut(s) 80
AlwNI CAGNNNCTG 1 cut(s) 319
Ama87I CYCGRG 1 cut(s) 230
AoxI GGCC 2 cut(s) 273, 358
ApoI RAATTY 1 cut(s) 305
AspS9I GGNCC 1 cut(s) 359
AsuHPI GGTGA 2 cut(s) 34, 179
AvaI CYCGRG 1 cut(s) 230
BalI TGGCCA 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 92
BccI CCATC 1 cut(s) 158
BcgI CGANNNNNNTGC 2 cut(s) 275, 309
BciT130I CCWGG 1 cut(s) 363
BclI TGATCA 1 cut(s) 199
BglI GCCNNNNNGGC 1 cut(s) 272
BisI GCNGC 1 cut(s) 221
BlsI GCNGC 1 cut(s) 222
Bme1390I CCNGG 1 cut(s) 363
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 359
BmrFI CCNGG 1 cut(s) 363
BmsI GCATC 2 cut(s) 130, 295
BpiI GAAGAC 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 361
Bsc4I CCNNNNNNNGG 1 cut(s) 356
Bse118I RCCGGY 1 cut(s) 211
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 1 cut(s) 361
BseGI GGATG 1 cut(s) 345
BseLI CCNNNNNNNGG 1 cut(s) 356
BseMII CTCAG 1 cut(s) 324
BshFI GGCC 2 cut(s) 275, 360
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 356
BsnI GGCC 2 cut(s) 275, 360
BsoBI CYCGRG 1 cut(s) 230
Bsp143I GATC 4 cut(s) 72, 148, 199, 292
BspACI CCGC 2 cut(s) 215, 220
BspANI GGCC 2 cut(s) 275, 360
BspCNI CTCAG 1 cut(s) 325
BspPI GGATC 1 cut(s) 80
BsrBI CCGCTC 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 211
BssAI RCCGGY 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 4 cut(s) 72, 148, 199, 292
Bst2UI CCWGG 1 cut(s) 363
Bst6I CTCTTC 1 cut(s) 129
BstC8I GCNNGC 2 cut(s) 237, 264
BstDEI CTNAG 1 cut(s) 333
BstF5I GGATG 1 cut(s) 345
BstKTI GATC 4 cut(s) 75, 151, 202, 295
BstMBI GATC 4 cut(s) 72, 148, 199, 292
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNI CCWGG 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 361
BstV2I GAAGAC 1 cut(s) 92
BsuRI GGCC 2 cut(s) 275, 360
BtsCI GGATG 1 cut(s) 345
Cac8I GCNNGC 2 cut(s) 237, 264
CaiI CAGNNNCTG 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 211
Cfr13I GGNCC 1 cut(s) 359
DdeI CTNAG 1 cut(s) 333
DpnI GATC 4 cut(s) 74, 150, 201, 294
DpnII GATC 4 cut(s) 72, 148, 199, 292
EaeI YGGCCR 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
EciI GGCGGA 1 cut(s) 230
Eco32I GATATC 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 359
EcoRI GAATTC 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 361
EcoRV GATATC 1 cut(s) 227
FaiI YATR 2 cut(s) 114, 179
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 221
FokI GGATG 1 cut(s) 332
Fsp4HI GCNGC 1 cut(s) 221
GluI GCNGC 1 cut(s) 221
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 2 cut(s) 275, 360
HapII CCGG 1 cut(s) 212
HpaII CCGG 1 cut(s) 212
HphI GGTGA 2 cut(s) 34, 179
Hpy188I TCNGA 2 cut(s) 204, 334
Hpy188III TCNNGA 3 cut(s) 230, 290, 302
HpyAV CCTTC 1 cut(s) 178
HpyCH4IV ACGT 2 cut(s) 18, 60
HpyCH4V TGCA 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 1 cut(s) 333
HpySE526I ACGT 2 cut(s) 18, 60
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 4 cut(s) 72, 148, 199, 292
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 6 cut(s) 174, 221, 225, 287, 305, 348
LweI GCATC 2 cut(s) 130, 295
MaeII ACGT 2 cut(s) 18, 60
MalI GATC 4 cut(s) 74, 150, 201, 294
MbiI CCGCTC 1 cut(s) 220
MboI GATC 4 cut(s) 72, 148, 199, 292
MboII GAAGA 3 cut(s) 94, 97, 116
MlsI TGGCCA 1 cut(s) 275
MluCI AATT 2 cut(s) 152, 305
MluNI TGGCCA 1 cut(s) 275
MnlI CCTC 2 cut(s) 142, 237
Mox20I TGGCCA 1 cut(s) 275
MscI TGGCCA 1 cut(s) 275
MseI TTAA 1 cut(s) 367
Msp20I TGGCCA 1 cut(s) 275
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 363
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeII GATC 4 cut(s) 72, 148, 199, 292
PaeR7I CTCGAG 1 cut(s) 230
PkrI GCNGC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PspPI GGNCC 1 cut(s) 359
PstNI CAGNNNCTG 1 cut(s) 319
SaqAI TTAA 1 cut(s) 367
SatI GCNGC 1 cut(s) 221
Sau3AI GATC 4 cut(s) 72, 148, 199, 292
Sau96I GGNCC 1 cut(s) 359
ScrFI CCNGG 1 cut(s) 363
SetI ASST 7 cut(s) 21, 36, 42, 63, 70, 256, 330
SfaNI GCATC 2 cut(s) 130, 295
Sfr274I CTCGAG 1 cut(s) 230
SgrAI CRCCGGYG 1 cut(s) 211
SlaI CTCGAG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 2 cut(s) 152, 305
SsiI CCGC 2 cut(s) 215, 220
StyD4I CCNGG 1 cut(s) 361
TaiI ACGT 2 cut(s) 21, 63
TaqI TCGA 1 cut(s) 231
TasI AATT 2 cut(s) 152, 305
TauI GCSGC 1 cut(s) 223
Tru1I TTAA 1 cut(s) 367
Tru9I TTAA 1 cut(s) 367
XapI RAATTY 1 cut(s) 305
XhoI CTCGAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.