Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002762

Physical Location & Seq

Genomic Coordinates Forward (+)

1672855 .. 1674953

Gene Structure 2099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G022600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTCATCATATGAGAATGTTGTTGGTGGGAAGCTGAAGCTTAAGGGAAAGGCTCTAGATGTGAAGGCTCCTGGAATGAAGAAGAAAAAGAAACATAAGAAACATCAAGATCAAACATCTCTTGTCACAGAAAATGAGCTCTCAGCTGGTGGAAGTACAGAACTATCAACGAACCCTGATGAGGAAGAAATAAATGATGCCAACAAATCAGGTGAGGAGGGGAAGGCTCCTCATTATGATGATCATCTCACACCTGCAGAGAGACGATATATAGAGCAGAGAGAGAGAATTGACACTCATAGGATGGCCAAGACAGCGAATAAATCGCACCGTGACAGAATTCAAGACTTCAACCAGTATCTGGCAAACATGAGTGAGCACTATGACATTCCTAAAGTTGGCCCTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1754

Protein Analysis

137

Amino Acids

15.37

Weight (kDa)

7.93

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16810 AT1G16810 AT1G16810
fragaria_vesca	FvH4_2g30690 FvH4_6g37010 FvH4_6g37010
malus_domestica	MD09G1165100.v1.1 MD15G1110000.v1.1
prunus_persica	Prupe.1G462200_v2.0.a1 Prupe.3G022600_v2.0.a1 Prupe.3G022600_v2.0.a1
pyrus_communis	pycom09g08240 pycom15g10010
rosa_chinensis	RchiOBHm_Chr2g0149551 RchiOBHm_Chr6g0312211
rosa_laevigata	RLG00000008248 RLG00000009118 RLG00000010342 RLG00000020419
rosa_multiflora	Rmu_sc0006867.1_g000014 Rmu_sc0010924.1_g000005 Rmu_sc0023979.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098020 Rroxscaffold_3G00254310 Rroxscaffold_7G00156950 Rroxscaffold_7G00195390
rosa_rugosa	Rorug02G0412100 Rorug02G0412100 Rorug02G0412200 Rorug02G0412300
rosa_samantha	Rh2AG472700 Rh2BG484700 Rh2CG458600 Rh2DG493900 Rh6AG511000 Rh6BG522000 Rh6DG513200
rosa_wichuraiana	Rw2G038530 Rw6G044440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	262
Acc36I	ACCTGC	1 cut(s)	262
AccB7I	CCANNNNNTGG	1 cut(s)	361
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	339
AcuI	CTGAAG	1 cut(s)	56
AfaI	GTAC	1 cut(s)	157
AfiI	CCNNNNNNNGG	3 cut(s)	181, 361, 398
AflII	CTTAAG	1 cut(s)	41
AgsI	TTSAA	2 cut(s)	344, 352
AjnI	CCWGG	2 cut(s)	70, 403
AluBI	AGCT	4 cut(s)	34, 40, 139, 146
AluI	AGCT	4 cut(s)	34, 40, 139, 146
Alw21I	GWGCWC	2 cut(s)	141, 381
Alw26I	GTCTC	1 cut(s)	256
AlwNI	CAGNNNCTG	1 cut(s)	361
AoxI	GGCC	2 cut(s)	306, 400
ApoI	RAATTY	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	224
BalI	TGGCCA	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	141
Bbv12I	GWGCWC	2 cut(s)	141, 381
BccI	CCATC	1 cut(s)	298
BciT130I	CCWGG	2 cut(s)	72, 405
BclI	TGATCA	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	255
BfrI	CTTAAG	1 cut(s)	41
BfuAI	ACCTGC	1 cut(s)	262
Bme1390I	CCNGG	2 cut(s)	72, 405
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	2 cut(s)	69, 228
BmrFI	CCNGG	2 cut(s)	72, 405
BmsI	GCATC	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	243
BsaJI	CCNNGG	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 361, 398
Bse1I	ACTGG	1 cut(s)	355
Bse8I	GATNNNNATC	1 cut(s)	243
BseBI	CCWGG	2 cut(s)	72, 405
BseDI	CCNNGG	1 cut(s)	403
BseGI	GGATG	1 cut(s)	309
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	3 cut(s)	181, 361, 398
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	355
BseRI	GAGGAG	2 cut(s)	219, 230
BshFI	GGCC	2 cut(s)	308, 402
BsiHKAI	GWGCWC	2 cut(s)	141, 381
BslI	CCNNNNNNNGG	3 cut(s)	181, 361, 398
BsmAI	GTCTC	1 cut(s)	256
BsmBI	CGTCTC	1 cut(s)	256
BsnI	GGCC	2 cut(s)	308, 402
Bsp1286I	GDGCHC	2 cut(s)	141, 381
Bsp143I	GATC	2 cut(s)	109, 241
BspANI	GGCC	2 cut(s)	308, 402
BspCNI	CTCAG	1 cut(s)	155
BspLI	GGNNCC	2 cut(s)	69, 228
BspMAI	CTGCAG	1 cut(s)	259
BspMI	ACCTGC	1 cut(s)	262
BspTI	CTTAAG	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	355
BssECI	CCNNGG	1 cut(s)	403
BssMI	GATC	2 cut(s)	109, 241
Bst2UI	CCWGG	2 cut(s)	72, 405
Bst4CI	ACNGT	1 cut(s)	332
BstAFI	CTTAAG	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	142
BstF5I	GGATG	1 cut(s)	309
BstKTI	GATC	2 cut(s)	112, 244
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	2 cut(s)	109, 241
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstNI	CCWGG	2 cut(s)	72, 405
BstSCI	CCNGG	2 cut(s)	70, 403
BstSFI	CTRYAG	1 cut(s)	255
BsuRI	GGCC	2 cut(s)	308, 402
BtsCI	GGATG	1 cut(s)	309
BveI	ACCTGC	1 cut(s)	262
CaiI	CAGNNNCTG	1 cut(s)	361
Cfr13I	GGNCC	1 cut(s)	401
Csp6I	GTAC	1 cut(s)	156
CviAII	CATG	1 cut(s)	370
CviQI	GTAC	1 cut(s)	156
DdeI	CTNAG	1 cut(s)	142
DpnI	GATC	2 cut(s)	111, 243
DpnII	GATC	2 cut(s)	109, 241
EaeI	YGGCCR	1 cut(s)	306
Ecl136II	GAGCTC	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	141
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	139
EcoRI	GAATTC	1 cut(s)	339
EcoRII	CCWGG	2 cut(s)	70, 403
EcoT38I	GRGCYC	1 cut(s)	141
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	1 cut(s)	373
FaiI	YATR	9 cut(s)	10, 12, 96, 237, 270, 272, 300, 371, 384
FatI	CATG	1 cut(s)	369
FauNDI	CATATG	1 cut(s)	10
FbaI	TGATCA	1 cut(s)	241
FokI	GGATG	1 cut(s)	316
FriOI	GRGCYC	1 cut(s)	141
FspBI	CTAG	1 cut(s)	56
HaeIII	GGCC	2 cut(s)	308, 402
Hin1II	CATG	1 cut(s)	373
HindIII	AAGCTT	1 cut(s)	38
HphI	GGTGA	1 cut(s)	224
Hpy188III	TCNNGA	3 cut(s)	56, 107, 344
HpyAV	CCTTC	2 cut(s)	58, 217
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4V	TGCA	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	1 cut(s)	142
Hsp92II	CATG	1 cut(s)	373
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	109, 241
LmnI	GCTCC	2 cut(s)	73, 232
LpnPI	CCDG	9 cut(s)	57, 84, 132, 189, 195, 267, 347, 368, 390
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	2 cut(s)	124, 332
MalI	GATC	2 cut(s)	111, 243
MboI	GATC	2 cut(s)	109, 241
MboII	GAAGA	3 cut(s)	91, 94, 197
MhlI	GDGCHC	2 cut(s)	141, 381
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	2 cut(s)	288, 339
MluNI	TGGCCA	1 cut(s)	308
MnlI	CCTC	4 cut(s)	175, 208, 211, 240
Mox20I	TGGCCA	1 cut(s)	308
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	1 cut(s)	42
MslI	CAYNNNNRTG	1 cut(s)	237
Msp20I	TGGCCA	1 cut(s)	308
MspA1I	CMGCKG	1 cut(s)	146
MspCI	CTTAAG	1 cut(s)	41
MspR9I	CCNGG	2 cut(s)	72, 405
MvaI	CCWGG	2 cut(s)	72, 405
MwoI	GCNNNNNNNGC	1 cut(s)	314
NdeI	CATATG	1 cut(s)	10
NdeII	GATC	2 cut(s)	109, 241
NlaIII	CATG	1 cut(s)	373
NlaIV	GGNNCC	2 cut(s)	69, 228
NmuCI	GTSAC	2 cut(s)	124, 332
PaqCI	CACCTGC	1 cut(s)	262
PflMI	CCANNNNNTGG	1 cut(s)	361
PfoI	TCCNGGA	1 cut(s)	70
Psp124BI	GAGCTC	1 cut(s)	141
Psp6I	CCWGG	2 cut(s)	70, 403
PspGI	CCWGG	2 cut(s)	70, 403
PspN4I	GGNNCC	2 cut(s)	69, 228
PspPI	GGNCC	1 cut(s)	401
PstI	CTGCAG	1 cut(s)	259
PstNI	CAGNNNCTG	1 cut(s)	361
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	237
SacI	GAGCTC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	42
Sau3AI	GATC	2 cut(s)	109, 241
Sau96I	GGNCC	1 cut(s)	401
ScrFI	CCNGG	2 cut(s)	72, 405
SduI	GDGCHC	2 cut(s)	141, 381
SetI	ASST	6 cut(s)	36, 42, 141, 148, 214, 256
SfaNI	GCATC	1 cut(s)	187
SfcI	CTRYAG	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	2 cut(s)	288, 339
SspMI	CTAG	1 cut(s)	56
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	2 cut(s)	70, 403
TaaI	ACNGT	1 cut(s)	332
TasI	AATT	2 cut(s)	288, 339
TatI	WGTACW	1 cut(s)	155
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TseFI	GTSAC	2 cut(s)	124, 332
Tsp45I	GTSAC	2 cut(s)	124, 332
TspDTI	ATGAA	1 cut(s)	92
Van91I	CCANNNNNTGG	1 cut(s)	361
Vha464I	CTTAAG	1 cut(s)	41
XapI	RAATTY	1 cut(s)	339
XbaI	TCTAGA	1 cut(s)	55
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.