Rh6BG522000

Eukaryotic family of unknown function (DUF1754)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002762
Physical Location & Seq
Reverse (-)
71517198 .. 71517761
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG522000.1

Sequence Viewer

Length: 282 bp
ATGACCAATCTCTTCAAGCCTCTAAAGGGTGATACTGATATGATAGGTGGAGATGCAATACATCAATTTGAGAATGGTGGTGATGACGACATAGGGAAGACTGGAGTTTTTGATCAGATGACACCGGCGGAGAGGCGATATCTCGAGCAGGCAGAGAGGCTTCAAGCTCAAAGGCTTGCCCAAATGCCCAAGCAATCGCATCGCGATCGGGTTCAGGAATTCAATCAGTATCTGGCTAACCTATCTGAGCATTACGACATCCCCAAAGTAGGCCCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1754

Protein Analysis

93

Amino Acids

10.58

Weight (kDa)

5.22

Isoelectric Point (pI)

33.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 204
AciI CCGC 1 cut(s) 128
AcsI RAATTY 1 cut(s) 218
AfiI CCNNNNNNNGG 2 cut(s) 26, 269
AgsI TTSAA 3 cut(s) 16, 164, 223
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
AlwNI CAGNNNCTG 1 cut(s) 232
Ama87I CYCGRG 1 cut(s) 143
AoxI GGCC 1 cut(s) 271
ApoI RAATTY 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 2 cut(s) 41, 92
AvaI CYCGRG 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 104
BcgI CGANNNNNNTGC 4 cut(s) 182, 188, 216, 222
BciT130I CCWGG 1 cut(s) 276
BclI TGATCA 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 276
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 272
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 2 cut(s) 43, 208
BpiI GAAGAC 1 cut(s) 104
BpmI CTGGAG 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 274
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 269
Bse118I RCCGGY 1 cut(s) 124
Bse1I ACTGG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 274
BseGI GGATG 1 cut(s) 258
BseLI CCNNNNNNNGG 2 cut(s) 26, 269
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 106
Bsh1236I CGCG 1 cut(s) 204
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 1 cut(s) 273
BsiEI CGRYCG 1 cut(s) 208
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 1 cut(s) 125
BslI CCNNNNNNNGG 2 cut(s) 26, 269
BsnI GGCC 1 cut(s) 273
BsoBI CYCGRG 1 cut(s) 143
Bsp143I GATC 2 cut(s) 112, 205
Bsp68I TCGCGA 1 cut(s) 204
BspACI CCGC 1 cut(s) 128
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 1 cut(s) 238
BspFNI CGCG 1 cut(s) 204
BsrFI RCCGGY 1 cut(s) 124
BsrI ACTGG 1 cut(s) 106
BssAI RCCGGY 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 274
BssMI GATC 2 cut(s) 112, 205
Bst2UI CCWGG 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 17
BstC8I GCNNGC 2 cut(s) 150, 177
BstDEI CTNAG 1 cut(s) 246
BstF5I GGATG 1 cut(s) 258
BstFNI CGCG 1 cut(s) 204
BstKTI GATC 2 cut(s) 115, 208
BstMBI GATC 2 cut(s) 112, 205
BstMCI CGRYCG 1 cut(s) 208
BstNI CCWGG 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 274
BstUI CGCG 1 cut(s) 204
BstV2I GAAGAC 1 cut(s) 104
BsuRI GGCC 1 cut(s) 273
BtgZI GCGATG 1 cut(s) 185
BtsCI GGATG 1 cut(s) 258
BtuMI TCGCGA 1 cut(s) 204
Cac8I GCNNGC 2 cut(s) 150, 177
CaiI CAGNNNCTG 1 cut(s) 232
Cfr10I RCCGGY 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 272
CviJI RGCY 6 cut(s) 19, 160, 167, 175, 236, 273
CviKI_1 RGCY 6 cut(s) 19, 160, 167, 175, 236, 273
DdeI CTNAG 1 cut(s) 246
DpnI GATC 2 cut(s) 114, 207
DpnII GATC 2 cut(s) 112, 205
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
EciI GGCGGA 1 cut(s) 143
Eco32I GATATC 1 cut(s) 140
Eco88I CYCGRG 1 cut(s) 143
EcoO109I RGGNCCY 1 cut(s) 272
EcoRI GAATTC 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 274
EcoRV GATATC 1 cut(s) 140
FaiI YATR 2 cut(s) 41, 92
FbaI TGATCA 1 cut(s) 112
FokI GGATG 1 cut(s) 245
GsuI CTGGAG 1 cut(s) 123
HaeIII GGCC 1 cut(s) 273
HapII CCGG 1 cut(s) 125
HpaII CCGG 1 cut(s) 125
HphI GGTGA 2 cut(s) 41, 92
Hpy188I TCNGA 2 cut(s) 117, 247
Hpy188III TCNNGA 3 cut(s) 143, 203, 215
HpyCH4V TGCA 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 246
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 2 cut(s) 112, 205
LpnPI CCDG 6 cut(s) 87, 134, 138, 200, 218, 261
LweI GCATC 2 cut(s) 43, 208
MalI GATC 2 cut(s) 114, 207
MboI GATC 2 cut(s) 112, 205
MboII GAAGA 2 cut(s) 4, 109
MluCI AATT 2 cut(s) 65, 218
MnlI CCTC 3 cut(s) 30, 126, 150
MseI TTAA 1 cut(s) 280
MspI CCGG 1 cut(s) 125
MspR9I CCNGG 1 cut(s) 276
MvaI CCWGG 1 cut(s) 276
MvnI CGCG 1 cut(s) 204
NdeII GATC 2 cut(s) 112, 205
NruI TCGCGA 1 cut(s) 204
PaeR7I CTCGAG 1 cut(s) 143
Ple19I CGATCG 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PspPI GGNCC 1 cut(s) 272
PstNI CAGNNNCTG 1 cut(s) 232
PvuI CGATCG 1 cut(s) 208
RruI TCGCGA 1 cut(s) 204
SaqAI TTAA 1 cut(s) 280
Sau3AI GATC 2 cut(s) 112, 205
Sau96I GGNCC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 276
SetI ASST 3 cut(s) 49, 169, 243
SfaNI GCATC 2 cut(s) 43, 208
Sfr274I CTCGAG 1 cut(s) 143
SgrAI CRCCGGYG 1 cut(s) 124
SlaI CTCGAG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 2 cut(s) 65, 218
SsiI CCGC 1 cut(s) 128
StyD4I CCNGG 1 cut(s) 274
TaqI TCGA 1 cut(s) 144
TasI AATT 2 cut(s) 65, 218
Tru1I TTAA 1 cut(s) 280
Tru9I TTAA 1 cut(s) 280
XapI RAATTY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.