Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002762

Physical Location & Seq

Genomic Coordinates Reverse (-)

38626757 .. 38628050

Gene Structure 1294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G462200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTCTGCTTTCGATAACGTAGTTGTTGTTGGGAAGCTGAAGCTGAAAGGAAAACCCTTGGCCGTGAAAGGAGGTGGGGTTTCAAAGAAAAATAAGAAGAAACGCAGCAATTATTATCACCAATTGTCTCAAGCCTCACAAGGGGTGATAGGTGGAGAAGCAGTGATGGATGATACTGAGAATGACGGTGGCAGAGGACAGGCTGGGGCTTATGATGATCATCTGACACCCGCGGAGAGGCGGTACCTCCAACAGACAGAGAGGATTCAACTGAAAAAGCTTGCCAAGATGGCCAAAAAATCACATCGCGATCGGGTTCAGGAATTTAACCACTATCTGGCAAATCTTAGTGAGCATCATGACATTCCCAAAGTAGGCCCTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

DUF1754

Protein Analysis

129

Amino Acids

14.17

Weight (kDa)

9.79

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16810 AT1G16810 AT1G16810
fragaria_vesca	FvH4_2g30690 FvH4_6g37010 FvH4_6g37010
malus_domestica	MD09G1165100.v1.1 MD15G1110000.v1.1
prunus_persica	Prupe.1G462200_v2.0.a1 Prupe.3G022600_v2.0.a1 Prupe.3G022600_v2.0.a1
pyrus_communis	pycom09g08240 pycom15g10010
rosa_chinensis	RchiOBHm_Chr2g0149551 RchiOBHm_Chr6g0312211
rosa_laevigata	RLG00000008248 RLG00000009118 RLG00000010342 RLG00000020419
rosa_multiflora	Rmu_sc0006867.1_g000014 Rmu_sc0010924.1_g000005 Rmu_sc0023979.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098020 Rroxscaffold_3G00254310 Rroxscaffold_7G00156950 Rroxscaffold_7G00195390
rosa_rugosa	Rorug02G0412100 Rorug02G0412100 Rorug02G0412200 Rorug02G0412300
rosa_samantha	Rh2AG472700 Rh2BG484700 Rh2CG458600 Rh2DG493900 Rh6AG511000 Rh6BG522000 Rh6DG513200
rosa_wichuraiana	Rw2G038530 Rw6G044440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	243
AccB1I	GGYRCC	1 cut(s)	243
AccB7I	CCANNNNNTGG	1 cut(s)	337
AccII	CGCG	2 cut(s)	233, 309
AciI	CCGC	3 cut(s)	231, 233, 241
AcoI	YGGCCR	2 cut(s)	60, 291
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	59
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	4 cut(s)	141, 237, 337, 374
AgsI	TTSAA	2 cut(s)	84, 269
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	3 cut(s)	37, 43, 280
AluI	AGCT	3 cut(s)	37, 43, 280
Alw26I	GTCTC	1 cut(s)	132
AoxI	GGCC	3 cut(s)	60, 291, 376
ApeKI	GCWGC	1 cut(s)	105
ApoI	RAATTY	1 cut(s)	323
Asp718I	GGTACC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	377
AsuHPI	GGTGA	2 cut(s)	110, 157
BalI	TGGCCA	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	117
BccI	CCATC	2 cut(s)	160, 283
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	381
BclI	TGATCA	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	132
BglI	GCCNNNNNGGC	1 cut(s)	290
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
Bme1390I	CCNGG	1 cut(s)	381
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	245
BmrFI	CCNGG	1 cut(s)	381
BmsI	GCATC	1 cut(s)	364
BpuEI	CTTGAG	1 cut(s)	114
BsaBI	GATNNNNATC	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	57, 231, 379
BsaXI	ACNNNNNCTCC	6 cut(s)	63, 93, 147, 177, 227, 257
Bsc4I	CCNNNNNNNGG	4 cut(s)	141, 237, 337, 374
Bse8I	GATNNNNATC	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	3 cut(s)	57, 231, 379
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	1 cut(s)	219
BseLI	CCNNNNNNNGG	4 cut(s)	141, 237, 337, 374
BseMII	CTCAG	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	117
BseYI	CCCAGC	1 cut(s)	203
Bsh1236I	CGCG	2 cut(s)	233, 309
Bsh1285I	CGRYCG	1 cut(s)	313
BshFI	GGCC	3 cut(s)	62, 293, 378
BshNI	GGYRCC	1 cut(s)	243
BsiEI	CGRYCG	1 cut(s)	313
BslI	CCNNNNNNNGG	4 cut(s)	141, 237, 337, 374
BsmAI	GTCTC	1 cut(s)	132
BsnI	GGCC	3 cut(s)	62, 293, 378
Bsp143I	GATC	2 cut(s)	217, 310
Bsp68I	TCGCGA	1 cut(s)	309
BspACI	CCGC	3 cut(s)	231, 233, 241
BspANI	GGCC	3 cut(s)	62, 293, 378
BspCNI	CTCAG	1 cut(s)	169
BspFNI	CGCG	2 cut(s)	233, 309
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	243
BssECI	CCNNGG	3 cut(s)	57, 231, 379
BssMI	GATC	2 cut(s)	217, 310
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	2 cut(s)	177, 347
BstDSI	CCRYGG	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	2 cut(s)	233, 309
BstKTI	GATC	2 cut(s)	220, 313
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	2 cut(s)	217, 310
BstMCI	CGRYCG	1 cut(s)	313
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	1 cut(s)	381
BstSCI	CCNGG	1 cut(s)	379
BstUI	CGCG	2 cut(s)	233, 309
BstV1I	GCAGC	1 cut(s)	117
BsuRI	GGCC	3 cut(s)	62, 293, 378
BtgI	CCRYGG	1 cut(s)	231
BtgZI	GCGATG	1 cut(s)	290
BtsCI	GGATG	1 cut(s)	175
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	168
BtuMI	TCGCGA	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	282
CciI	TCATGA	1 cut(s)	358
Cfr13I	GGNCC	1 cut(s)	377
Cfr42I	CCGCGG	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	1 cut(s)	359
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	2 cut(s)	177, 347
DpnI	GATC	2 cut(s)	219, 312
DpnII	GATC	2 cut(s)	217, 310
EaeI	YGGCCR	2 cut(s)	60, 291
Eco130I	CCWWGG	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	1 cut(s)	362
FaiI	YATR	2 cut(s)	213, 360
FatI	CATG	1 cut(s)	358
FauI	CCCGC	1 cut(s)	238
FbaI	TGATCA	1 cut(s)	217
Fnu4HI	GCNGC	1 cut(s)	106
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	106
GluI	GCNGC	1 cut(s)	106
GsaI	CCCAGC	1 cut(s)	207
HaeIII	GGCC	3 cut(s)	62, 293, 378
Hin1II	CATG	1 cut(s)	362
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	1 cut(s)	265
HphI	GGTGA	2 cut(s)	110, 157
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	3 cut(s)	308, 320, 359
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4IV	ACGT	1 cut(s)	18
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	2 cut(s)	177, 347
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	1 cut(s)	362
KpnI	GGTACC	1 cut(s)	247
Ksp22I	TGATCA	1 cut(s)	217
KspI	CCGCGG	1 cut(s)	234
Kzo9I	GATC	2 cut(s)	217, 310
LpnPI	CCDG	5 cut(s)	185, 189, 305, 323, 366
Lsp1109I	GCAGC	1 cut(s)	117
LweI	GCATC	1 cut(s)	364
MaeII	ACGT	1 cut(s)	18
MalI	GATC	2 cut(s)	219, 312
MboI	GATC	2 cut(s)	217, 310
MboII	GAAGA	1 cut(s)	109
MfeI	CAATTG	1 cut(s)	122
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	3 cut(s)	109, 122, 323
MluNI	TGGCCA	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	6 cut(s)	65, 145, 188, 231, 255, 257
Mox20I	TGGCCA	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	293
MseI	TTAA	1 cut(s)	327
Msp20I	TGGCCA	1 cut(s)	293
MspA1I	CMGCKG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	381
MunI	CAATTG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	381
MvnI	CGCG	2 cut(s)	233, 309
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeII	GATC	2 cut(s)	217, 310
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	1 cut(s)	245
NruI	TCGCGA	1 cut(s)	309
PagI	TCATGA	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	265
PflMI	CCANNNNNTGG	1 cut(s)	337
PkrI	GCNGC	1 cut(s)	107
Ple19I	CGATCG	1 cut(s)	313
Psp6I	CCWGG	1 cut(s)	379
PspFI	CCCAGC	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	1 cut(s)	245
PspPI	GGNCC	1 cut(s)	377
PvuI	CGATCG	1 cut(s)	313
RruI	TCGCGA	1 cut(s)	309
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SacII	CCGCGG	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	1 cut(s)	106
Sau3AI	GATC	2 cut(s)	217, 310
Sau96I	GGNCC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	381
SetI	ASST	7 cut(s)	21, 39, 45, 76, 154, 249, 282
SfaNI	GCATC	1 cut(s)	364
Sfr303I	CCGCGG	1 cut(s)	234
SgrBI	CCGCGG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	129
SmoI	CTYRAG	1 cut(s)	129
Sse9I	AATT	3 cut(s)	109, 122, 323
SsiI	CCGC	3 cut(s)	231, 233, 241
StyD4I	CCNGG	1 cut(s)	379
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	188
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	1 cut(s)	12
TasI	AATT	3 cut(s)	109, 122, 323
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	1 cut(s)	168
TseI	GCWGC	1 cut(s)	105
TspRI	CASTG	1 cut(s)	168
Van91I	CCANNNNNTGG	1 cut(s)	337
XapI	RAATTY	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.