FvH4_6g37010

Eukaryotic family of unknown function (DUF1754)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002762
Physical Location & Seq
Reverse (-)
29065142 .. 29067421
2280 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g37010.t1

Sequence Viewer

Length: 408 bp
ATGTCGGCATACGAGAATGTTGTTGGTGGGAAGCTCAAGCTTAAGGGGAAGGCTCTGGATGTGAAGGCTGCTGGAATTAAGAAGAAGAAGAAACATAAGAAACATCAGGAGCAAATATCTCTTGTCAACCAGAAGGAGCTTGCAGCTGGTGGAAGTACAGAAGAGTTGACCAATCCTGATGAGGAAGATATGAATGATGACAACAGATCAAGAGAGGATGGGAAGGGTAGTTATGATGAGTATCTCACACCTGCAGAGAGGCGATATATAGAACAGAGAGAGCAAATTGATAATCACAAGTTGGCCAAAACGGCTAATAAATCACACCGTGACAGAATTCAAGATTTCAACCAGTACCTGGCAAACATGAGTGAGCATTATGACATTCCTAAAGTTGGGCCAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko01100 ko01110 map00100 map01100 map01110
Pfam Domains
Protein Families
DUF1754 ERG4_ERG24

Protein Analysis

136

Amino Acids

15.37

Weight (kDa)

7.88

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAM32A PF08555 3 - 98 1.3e-15 FAM32A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 259
Acc36I ACCTGC 1 cut(s) 259
AccB7I CCANNNNNTGG 1 cut(s) 358
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 1 cut(s) 336
AdeI CACNNNGTG 1 cut(s) 329
AfaI GTAC 2 cut(s) 157, 356
AfiI CCNNNNNNNGG 2 cut(s) 358, 395
AflII CTTAAG 1 cut(s) 41
AgsI TTSAA 2 cut(s) 341, 349
AjnI CCWGG 2 cut(s) 357, 400
AluBI AGCT 4 cut(s) 34, 40, 139, 146
AluI AGCT 4 cut(s) 34, 40, 139, 146
AlwNI CAGNNNCTG 1 cut(s) 358
AoxI GGCC 2 cut(s) 303, 398
ApeKI GCWGC 2 cut(s) 68, 143
ApoI RAATTY 1 cut(s) 336
AspS9I GGNCC 1 cut(s) 398
BalI TGGCCA 1 cut(s) 305
BbvI GCAGC 2 cut(s) 55, 155
BccI CCATC 1 cut(s) 212
BceAI ACGGC 1 cut(s) 327
BciT130I CCWGG 2 cut(s) 359, 402
BfmI CTRYAG 1 cut(s) 252
BfrI CTTAAG 1 cut(s) 41
BfuAI ACCTGC 1 cut(s) 259
BglI GCCNNNNNGGC 1 cut(s) 311
BisI GCNGC 2 cut(s) 69, 144
BlsI GCNGC 2 cut(s) 70, 145
Bme1390I CCNGG 2 cut(s) 359, 402
BmgT120I GGNCC 1 cut(s) 398
BmrFI CCNGG 2 cut(s) 359, 402
BpuEI CTTGAG 1 cut(s) 20
BsaBI GATNNNNATC 1 cut(s) 240
Bsc4I CCNNNNNNNGG 2 cut(s) 358, 395
Bse1I ACTGG 1 cut(s) 352
Bse8I GATNNNNATC 1 cut(s) 240
BseBI CCWGG 2 cut(s) 359, 402
BseGI GGATG 2 cut(s) 64, 223
BseJI GATNNNNATC 1 cut(s) 240
BseLI CCNNNNNNNGG 2 cut(s) 358, 395
BseNI ACTGG 1 cut(s) 352
BseXI GCAGC 2 cut(s) 55, 155
BshFI GGCC 2 cut(s) 305, 400
BslI CCNNNNNNNGG 2 cut(s) 358, 395
BsnI GGCC 2 cut(s) 305, 400
Bsp143I GATC 1 cut(s) 206
BspANI GGCC 2 cut(s) 305, 400
BspMAI CTGCAG 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 259
BspTI CTTAAG 1 cut(s) 41
BsrI ACTGG 1 cut(s) 352
BssMI GATC 1 cut(s) 206
Bst2UI CCWGG 2 cut(s) 359, 402
Bst4CI ACNGT 1 cut(s) 329
Bst6I CTCTTC 1 cut(s) 156
BstAFI CTTAAG 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 141
BstF5I GGATG 2 cut(s) 64, 223
BstKTI GATC 1 cut(s) 209
BstMBI GATC 1 cut(s) 206
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 2 cut(s) 359, 402
BstSCI CCNGG 2 cut(s) 357, 400
BstSFI CTRYAG 1 cut(s) 252
BstV1I GCAGC 2 cut(s) 55, 155
BsuRI GGCC 2 cut(s) 305, 400
BtsCI GGATG 2 cut(s) 64, 223
BveI ACCTGC 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 141
CaiI CAGNNNCTG 1 cut(s) 358
Cfr13I GGNCC 1 cut(s) 398
Csp6I GTAC 2 cut(s) 156, 355
CviAII CATG 1 cut(s) 367
CviQI GTAC 2 cut(s) 156, 355
DpnI GATC 1 cut(s) 208
DpnII GATC 1 cut(s) 206
DraIII CACNNNGTG 1 cut(s) 329
EaeI YGGCCR 1 cut(s) 303
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
EcoRI GAATTC 1 cut(s) 336
EcoRII CCWGG 2 cut(s) 357, 400
FaeI CATG 1 cut(s) 370
FaiI YATR 8 cut(s) 10, 96, 191, 234, 267, 269, 368, 381
FatI CATG 1 cut(s) 366
Fnu4HI GCNGC 2 cut(s) 69, 144
FokI GGATG 2 cut(s) 71, 230
Fsp4HI GCNGC 2 cut(s) 69, 144
GluI GCNGC 2 cut(s) 69, 144
HaeIII GGCC 2 cut(s) 305, 400
Hin1II CATG 1 cut(s) 370
HincII GTYRAC 2 cut(s) 127, 168
HindII GTYRAC 2 cut(s) 127, 168
HindIII AAGCTT 1 cut(s) 38
Hpy166II GTNNAC 2 cut(s) 127, 168
Hpy188III TCNNGA 5 cut(s) 56, 107, 176, 210, 341
Hpy8I GTNNAC 2 cut(s) 127, 168
HpyAV CCTTC 4 cut(s) 43, 58, 127, 217
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4V TGCA 2 cut(s) 143, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
Hsp92II CATG 1 cut(s) 370
Kzo9I GATC 1 cut(s) 206
LmnI GCTCC 2 cut(s) 109, 136
Lsp1109I GCAGC 2 cut(s) 55, 155
MaeIII GTNAC 1 cut(s) 329
MalI GATC 1 cut(s) 208
MboI GATC 1 cut(s) 206
MboII GAAGA 5 cut(s) 94, 97, 100, 173, 197
MlsI TGGCCA 1 cut(s) 305
MluCI AATT 3 cut(s) 75, 285, 336
MluNI TGGCCA 1 cut(s) 305
MnlI CCTC 3 cut(s) 175, 208, 252
Mox20I TGGCCA 1 cut(s) 305
MscI TGGCCA 1 cut(s) 305
MseI TTAA 2 cut(s) 42, 78
Msp20I TGGCCA 1 cut(s) 305
MspA1I CMGCKG 1 cut(s) 146
MspCI CTTAAG 1 cut(s) 41
MspR9I CCNGG 2 cut(s) 359, 402
MvaI CCWGG 2 cut(s) 359, 402
MwoI GCNNNNNNNGC 1 cut(s) 311
NdeII GATC 1 cut(s) 206
NlaIII CATG 1 cut(s) 370
NmuCI GTSAC 1 cut(s) 329
PaqCI CACCTGC 1 cut(s) 259
PflMI CCANNNNNTGG 1 cut(s) 358
PkrI GCNGC 2 cut(s) 70, 145
Psp6I CCWGG 2 cut(s) 357, 400
PspGI CCWGG 2 cut(s) 357, 400
PspPI GGNCC 1 cut(s) 398
PstI CTGCAG 1 cut(s) 256
PstNI CAGNNNCTG 1 cut(s) 358
PvuII CAGCTG 1 cut(s) 146
RsaI GTAC 2 cut(s) 157, 356
RsaNI GTAC 2 cut(s) 156, 355
SaqAI TTAA 2 cut(s) 42, 78
SatI GCNGC 2 cut(s) 69, 144
Sau3AI GATC 1 cut(s) 206
Sau96I GGNCC 1 cut(s) 398
ScrFI CCNGG 2 cut(s) 359, 402
SetI ASST 6 cut(s) 36, 42, 141, 148, 253, 360
SfcI CTRYAG 1 cut(s) 252
SmlI CTYRAG 2 cut(s) 35, 41
SmoI CTYRAG 2 cut(s) 35, 41
Sse9I AATT 3 cut(s) 75, 285, 336
StyD4I CCNGG 2 cut(s) 357, 400
TaaI ACNGT 1 cut(s) 329
TasI AATT 3 cut(s) 75, 285, 336
TatI WGTACW 1 cut(s) 155
Tru1I TTAA 2 cut(s) 42, 78
Tru9I TTAA 2 cut(s) 42, 78
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 2 cut(s) 68, 143
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 1 cut(s) 206
Van91I CCANNNNNTGG 1 cut(s) 358
Vha464I CTTAAG 1 cut(s) 41
XapI RAATTY 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.