RLG00000010342

Eukaryotic family of unknown function (DUF1754)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002762
Physical Location & Seq
Forward (+)
825336 .. 825792
457 bp
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UTR
Exon/CDS
Intron
RLM00000010342

Sequence Viewer

Length: 357 bp
ATGTCTGCTTACGATAACGTGGTGATTGGGAAGCTGAAGCTGAAAGGCAAAGCCTTGAACGTGAAAGGTGGGATCAAAAAGAAGAAGAAGAAGAAGAAGCACGGCAAACGCTACGAGTATGACCAATCTCTTCAAGCCTCAAAAGGTGGAGATGATGCAATAGATCAATTTGAGAATGATGGTGATGACGACATAGGGAAGGCTGGAGTTTTTGATCAGATGACACCGGCGGAGAGGCAGAGAGGCTTCAAGCTCAAAGGCTTGCCCAAATGGCCAAGAAATAGCATCGCGATCGGGTTCAGGAATTCAATCACTATCTGGGTAACCTATCTGAGCATTACGACATCCCCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1754

Protein Analysis

119

Amino Acids

13.17

Weight (kDa)

9.92

Isoelectric Point (pI)

21.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAM32A PF08555 3 - 80 8.9e-11 FAM32A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 290
AciI CCGC 1 cut(s) 230
AclWI GGATC 1 cut(s) 80
AcoI YGGCCR 1 cut(s) 272
AcsI RAATTY 1 cut(s) 304
AcuI CTGAAG 1 cut(s) 56
AgsI TTSAA 4 cut(s) 58, 134, 250, 309
AluBI AGCT 3 cut(s) 34, 40, 253
AluI AGCT 3 cut(s) 34, 40, 253
AlwI GGATC 1 cut(s) 80
AoxI GGCC 1 cut(s) 272
ApoI RAATTY 1 cut(s) 304
AsuHPI GGTGA 2 cut(s) 34, 194
BalI TGGCCA 1 cut(s) 274
BccI CCATC 1 cut(s) 173
BceAI ACGGC 1 cut(s) 118
BcgI CGANNNNNNTGC 2 cut(s) 274, 308
BclI TGATCA 1 cut(s) 214
BglI GCCNNNNNGGC 1 cut(s) 271
BmsI GCATC 2 cut(s) 145, 294
BpmI CTGGAG 1 cut(s) 225
Bse118I RCCGGY 1 cut(s) 226
BseGI GGATG 1 cut(s) 344
BseMII CTCAG 1 cut(s) 323
Bsh1236I CGCG 1 cut(s) 290
Bsh1285I CGRYCG 1 cut(s) 294
BshFI GGCC 1 cut(s) 274
BsiEI CGRYCG 1 cut(s) 294
BsiSI CCGG 1 cut(s) 227
BsnI GGCC 1 cut(s) 274
Bsp143I GATC 4 cut(s) 72, 163, 214, 291
Bsp68I TCGCGA 1 cut(s) 290
BspACI CCGC 1 cut(s) 230
BspANI GGCC 1 cut(s) 274
BspCNI CTCAG 1 cut(s) 324
BspFNI CGCG 1 cut(s) 290
BspPI GGATC 1 cut(s) 80
BsrFI RCCGGY 1 cut(s) 226
BssAI RCCGGY 1 cut(s) 226
BssMI GATC 4 cut(s) 72, 163, 214, 291
Bst6I CTCTTC 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 263
BstDEI CTNAG 1 cut(s) 332
BstEII GGTNACC 1 cut(s) 322
BstF5I GGATG 1 cut(s) 344
BstFNI CGCG 1 cut(s) 290
BstKTI GATC 4 cut(s) 75, 166, 217, 294
BstMBI GATC 4 cut(s) 72, 163, 214, 291
BstMCI CGRYCG 1 cut(s) 294
BstMWI GCNNNNNNNGC 1 cut(s) 271
BstPI GGTNACC 1 cut(s) 322
BstUI CGCG 1 cut(s) 290
BsuRI GGCC 1 cut(s) 274
BtgZI GCGATG 1 cut(s) 271
BtsCI GGATG 1 cut(s) 344
BtuMI TCGCGA 1 cut(s) 290
Cac8I GCNNGC 1 cut(s) 263
Cfr10I RCCGGY 1 cut(s) 226
CviJI RGCY 9 cut(s) 34, 40, 53, 137, 203, 246, 253, 261, 274
CviKI_1 RGCY 9 cut(s) 34, 40, 53, 137, 203, 246, 253, 261, 274
DdeI CTNAG 1 cut(s) 332
DpnI GATC 4 cut(s) 74, 165, 216, 293
DpnII GATC 4 cut(s) 72, 163, 214, 291
EaeI YGGCCR 1 cut(s) 272
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
EciI GGCGGA 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 56
Eco91I GGTNACC 1 cut(s) 322
EcoO65I GGTNACC 1 cut(s) 322
EcoRI GAATTC 1 cut(s) 304
FaiI YATR 2 cut(s) 120, 194
FbaI TGATCA 1 cut(s) 214
FokI GGATG 1 cut(s) 331
GsuI CTGGAG 1 cut(s) 225
HaeIII GGCC 1 cut(s) 274
HapII CCGG 1 cut(s) 227
HpaII CCGG 1 cut(s) 227
HphI GGTGA 2 cut(s) 34, 194
Hpy188I TCNGA 2 cut(s) 219, 333
Hpy188III TCNNGA 2 cut(s) 289, 301
HpyAV CCTTC 1 cut(s) 193
HpyCH4IV ACGT 2 cut(s) 18, 60
HpyCH4V TGCA 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 271
HpyF3I CTNAG 1 cut(s) 332
HpySE526I ACGT 2 cut(s) 18, 60
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 4 cut(s) 72, 163, 214, 291
LpnPI CCDG 4 cut(s) 189, 240, 286, 304
LweI GCATC 2 cut(s) 145, 294
MaeII ACGT 2 cut(s) 18, 60
MaeIII GTNAC 1 cut(s) 322
MalI GATC 4 cut(s) 74, 165, 216, 293
MboI GATC 4 cut(s) 72, 163, 214, 291
MboII GAAGA 6 cut(s) 94, 97, 100, 103, 106, 122
MlsI TGGCCA 1 cut(s) 274
MluCI AATT 2 cut(s) 167, 304
MluNI TGGCCA 1 cut(s) 274
MnlI CCTC 3 cut(s) 148, 228, 236
Mox20I TGGCCA 1 cut(s) 274
MscI TGGCCA 1 cut(s) 274
Msp20I TGGCCA 1 cut(s) 274
MspI CCGG 1 cut(s) 227
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 271
NdeII GATC 4 cut(s) 72, 163, 214, 291
NruI TCGCGA 1 cut(s) 290
Ple19I CGATCG 1 cut(s) 294
PspEI GGTNACC 1 cut(s) 322
PvuI CGATCG 1 cut(s) 294
RruI TCGCGA 1 cut(s) 290
Sau3AI GATC 4 cut(s) 72, 163, 214, 291
SetI ASST 8 cut(s) 21, 36, 42, 63, 70, 148, 255, 329
SfaNI GCATC 2 cut(s) 145, 294
SgrAI CRCCGGYG 1 cut(s) 226
Sse9I AATT 2 cut(s) 167, 304
SsiI CCGC 1 cut(s) 230
TaiI ACGT 2 cut(s) 21, 63
TasI AATT 2 cut(s) 167, 304
XapI RAATTY 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.