Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002762

Physical Location & Seq

Genomic Coordinates Reverse (-)

6553296 .. 6553938

Gene Structure 643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g10010.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTCTGCGTTCGATAACGTGGTTGTAGGGAAGCTGAAGCTGAAAGGCAAAGCCTTGGACGTCAAAGGCGGTGCGATTTCAAAGAAAAAGAAGAAGAAACAGAGCGCATTTTATCACCAATTGTCTGAGGCCTCCACAGGTGGAGAAGCAGTGACAGATGATGCTGAGAACGAAGGCGGCATTGGCACGACGCAGGCTGCTGCTTCTGCTTATGGTCATCTGACACCGGCGGAGAGGCGGTACCTCGAGCAGGCAGAGAGGATTCAACGCCAGAGGCTTTCCCAGATTGCTCGAAAATCGCACCGCGATCGGGTTCAGGAATTCAATCAGTATCTGGCTAATCTGAGCGAGCATTATGACATTCCTAAAGTAGGCCCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1754

Protein Analysis

128

Amino Acids

13.94

Weight (kDa)

9.58

Isoelectric Point (pI)

30.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16810 AT1G16810 AT1G16810
fragaria_vesca	FvH4_2g30690 FvH4_6g37010 FvH4_6g37010
malus_domestica	MD09G1165100.v1.1 MD15G1110000.v1.1
prunus_persica	Prupe.1G462200_v2.0.a1 Prupe.3G022600_v2.0.a1 Prupe.3G022600_v2.0.a1
pyrus_communis	pycom09g08240 pycom15g10010
rosa_chinensis	RchiOBHm_Chr2g0149551 RchiOBHm_Chr6g0312211
rosa_laevigata	RLG00000008248 RLG00000009118 RLG00000010342 RLG00000020419
rosa_multiflora	Rmu_sc0006867.1_g000014 Rmu_sc0010924.1_g000005 Rmu_sc0023979.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098020 Rroxscaffold_3G00254310 Rroxscaffold_7G00156950 Rroxscaffold_7G00195390
rosa_rugosa	Rorug02G0412100 Rorug02G0412100 Rorug02G0412200 Rorug02G0412300
rosa_samantha	Rh2AG472700 Rh2BG484700 Rh2CG458600 Rh2DG493900 Rh6AG511000 Rh6BG522000 Rh6DG513200
rosa_wichuraiana	Rw2G038530 Rw6G044440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	63
Acc65I	GGTACC	1 cut(s)	240
AccB1I	GGYRCC	1 cut(s)	240
AccII	CGCG	1 cut(s)	306
AciI	CCGC	5 cut(s)	69, 177, 230, 238, 304
AcsI	RAATTY	1 cut(s)	320
AcuI	CTGAAG	1 cut(s)	56
AcyI	GRCGYC	1 cut(s)	60
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	3 cut(s)	250, 310, 371
AgsI	TTSAA	3 cut(s)	81, 266, 325
AjnI	CCWGG	1 cut(s)	376
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
AluBI	AGCT	2 cut(s)	34, 40
AluI	AGCT	2 cut(s)	34, 40
AlwNI	CAGNNNCTG	1 cut(s)	334
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	2 cut(s)	129, 373
ApeKI	GCWGC	2 cut(s)	197, 200
ApoI	RAATTY	1 cut(s)	320
Asp718I	GGTACC	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	107
AvaI	CYCGRG	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	184, 187
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BciT130I	CCWGG	1 cut(s)	378
BisI	GCNGC	3 cut(s)	178, 198, 201
BlsI	GCNGC	3 cut(s)	179, 199, 202
Bme1390I	CCNGG	1 cut(s)	378
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	1 cut(s)	242
BmrFI	CCNGG	1 cut(s)	378
BmsI	GCATC	1 cut(s)	151
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	54, 376
BsaXI	ACNNNNNCTCC	4 cut(s)	135, 165, 224, 254
Bsc4I	CCNNNNNNNGG	3 cut(s)	250, 310, 371
Bse118I	RCCGGY	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	54, 376
BseLI	CCNNNNNNNGG	3 cut(s)	250, 310, 371
BseMII	CTCAG	3 cut(s)	117, 156, 335
BseXI	GCAGC	2 cut(s)	184, 187
Bsh1236I	CGCG	1 cut(s)	306
Bsh1285I	CGRYCG	1 cut(s)	310
BshFI	GGCC	2 cut(s)	131, 375
BshNI	GGYRCC	1 cut(s)	240
BsiEI	CGRYCG	1 cut(s)	310
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	227
BslI	CCNNNNNNNGG	3 cut(s)	250, 310, 371
BsnI	GGCC	2 cut(s)	131, 375
BsoBI	CYCGRG	1 cut(s)	245
Bsp143I	GATC	1 cut(s)	307
BspACI	CCGC	5 cut(s)	69, 177, 230, 238, 304
BspANI	GGCC	2 cut(s)	131, 375
BspCNI	CTCAG	3 cut(s)	118, 157, 336
BspFNI	CGCG	1 cut(s)	306
BspLI	GGNNCC	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	240
BsrFI	RCCGGY	1 cut(s)	226
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	2 cut(s)	54, 376
BssMI	GATC	1 cut(s)	307
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	378
BstACI	GRCGYC	1 cut(s)	60
BstC8I	GCNNGC	3 cut(s)	195, 252, 350
BstDEI	CTNAG	3 cut(s)	126, 165, 344
BstENI	CCTNNNNNAGG	2 cut(s)	248, 369
BstFNI	CGCG	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	1 cut(s)	310
BstMBI	GATC	1 cut(s)	307
BstMCI	CGRYCG	1 cut(s)	310
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 206
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	376
BstUI	CGCG	1 cut(s)	306
BstV1I	GCAGC	2 cut(s)	184, 187
BsuRI	GGCC	2 cut(s)	131, 375
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	3 cut(s)	195, 252, 350
CaiI	CAGNNNCTG	1 cut(s)	334
CfoI	GCGC	1 cut(s)	107
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	374
CseI	GACGC	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	241
CviJI	RGCY	8 cut(s)	34, 40, 53, 131, 197, 277, 338, 375
CviKI_1	RGCY	8 cut(s)	34, 40, 53, 131, 197, 277, 338, 375
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	3 cut(s)	126, 165, 344
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
EciI	GGCGGA	1 cut(s)	245
Eco130I	CCWWGG	1 cut(s)	54
Eco147I	AGGCCT	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	56
Eco88I	CYCGRG	1 cut(s)	245
EcoNI	CCTNNNNNAGG	2 cut(s)	248, 369
EcoO109I	RGGNCCY	1 cut(s)	374
EcoRI	GAATTC	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaiI	YATR	2 cut(s)	213, 357
Fnu4HI	GCNGC	3 cut(s)	178, 198, 201
Fsp4HI	GCNGC	3 cut(s)	178, 198, 201
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	3 cut(s)	178, 198, 201
HaeIII	GGCC	2 cut(s)	131, 375
HapII	CCGG	1 cut(s)	227
HgaI	GACGC	1 cut(s)	199
HhaI	GCGC	1 cut(s)	107
Hin1I	GRCGYC	1 cut(s)	60
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HinfI	GANTC	1 cut(s)	262
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	1 cut(s)	107
Hpy188I	TCNGA	3 cut(s)	127, 222, 345
Hpy188III	TCNNGA	1 cut(s)	317
Hpy99I	CGWCG	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	167
HpyCH4IV	ACGT	2 cut(s)	18, 60
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 206
HpyF3I	CTNAG	3 cut(s)	126, 165, 344
HpySE526I	ACGT	2 cut(s)	18, 60
Hsp92I	GRCGYC	1 cut(s)	60
HspAI	GCGC	1 cut(s)	105
KpnI	GGTACC	1 cut(s)	244
Kzo9I	GATC	1 cut(s)	307
LpnPI	CCDG	9 cut(s)	123, 179, 236, 240, 284, 296, 302, 320, 363
Lsp1109I	GCAGC	2 cut(s)	184, 187
LweI	GCATC	1 cut(s)	151
MaeII	ACGT	2 cut(s)	18, 60
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	2 cut(s)	103, 106
MfeI	CAATTG	1 cut(s)	119
MluCI	AATT	2 cut(s)	119, 320
MnlI	CCTC	6 cut(s)	121, 142, 228, 252, 254, 267
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	378
MunI	CAATTG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	378
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	2 cut(s)	183, 206
NdeII	GATC	1 cut(s)	307
NlaIV	GGNNCC	1 cut(s)	242
NmuCI	GTSAC	1 cut(s)	151
PaeR7I	CTCGAG	1 cut(s)	245
PceI	AGGCCT	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	262
PkrI	GCNGC	3 cut(s)	179, 199, 202
Ple19I	CGATCG	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	242
PspPI	GGNCC	1 cut(s)	374
PspXI	VCTCGAGB	1 cut(s)	245
PstNI	CAGNNNCTG	1 cut(s)	334
PvuI	CGATCG	1 cut(s)	310
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SatI	GCNGC	3 cut(s)	178, 198, 201
Sau3AI	GATC	1 cut(s)	307
Sau96I	GGNCC	1 cut(s)	374
ScrFI	CCNGG	1 cut(s)	378
SetI	ASST	6 cut(s)	21, 36, 42, 63, 142, 246
SfaNI	GCATC	1 cut(s)	151
Sfr274I	CTCGAG	1 cut(s)	245
SgrAI	CRCCGGYG	1 cut(s)	226
SlaI	CTCGAG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	119, 320
SseBI	AGGCCT	1 cut(s)	131
SsiI	CCGC	5 cut(s)	69, 177, 230, 238, 304
StuI	AGGCCT	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	376
StyI	CCWWGG	1 cut(s)	54
TaiI	ACGT	2 cut(s)	21, 63
TaqI	TCGA	3 cut(s)	12, 246, 292
TasI	AATT	2 cut(s)	119, 320
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	1 cut(s)	262
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	2 cut(s)	197, 200
Tsp45I	GTSAC	1 cut(s)	151
TspRI	CASTG	1 cut(s)	156
XagI	CCTNNNNNAGG	2 cut(s)	248, 369
XapI	RAATTY	1 cut(s)	320
XhoI	CTCGAG	1 cut(s)	245
ZraI	GACGTC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.