Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002762

Physical Location & Seq

Genomic Coordinates Forward (+)

27715702 .. 27716547

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008248

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTCATCGGTGACTAGTGTAGAGAAGGTGAACTGGTTCGACGTTGAGAGAAAGCCATCGAGCAAACTCAACATTGCTCGGGGCATTGAGGCTCAGGACACCCAAGTCTTGGTCCTGATGATTAGAACGACGTCGTTTGACACCATCACTTCCACCAGTAGCGCCACTGCCACACAATATCTAGGTTCATCAACACCGTCCTCCGCTACTGGTACAAGTAATTCGTCACTGCTCAATGGAGAAGCTAGCGTTGGTGAAGTTGAAGCTGGTGGAGTTGTCGCCAAAGGAAAAGAGTCCGAAGGAGGAGGATTTAGAGTGTGGCCTGATGCTGAACTTGGACTACGATCGACCAGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

12.48

Weight (kDa)

5.1

Isoelectric Point (pI)

32.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16810 AT1G16810 AT1G16810
fragaria_vesca	FvH4_2g30690 FvH4_6g37010 FvH4_6g37010
malus_domestica	MD09G1165100.v1.1 MD15G1110000.v1.1
prunus_persica	Prupe.1G462200_v2.0.a1 Prupe.3G022600_v2.0.a1 Prupe.3G022600_v2.0.a1
pyrus_communis	pycom09g08240 pycom15g10010
rosa_chinensis	RchiOBHm_Chr2g0149551 RchiOBHm_Chr6g0312211
rosa_laevigata	RLG00000008248 RLG00000009118 RLG00000010342 RLG00000020419
rosa_multiflora	Rmu_sc0006867.1_g000014 Rmu_sc0010924.1_g000005 Rmu_sc0023979.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098020 Rroxscaffold_3G00254310 Rroxscaffold_7G00156950 Rroxscaffold_7G00195390
rosa_rugosa	Rorug02G0412100 Rorug02G0412100 Rorug02G0412200 Rorug02G0412300
rosa_samantha	Rh2AG472700 Rh2BG484700 Rh2CG458600 Rh2DG493900 Rh6AG511000 Rh6BG522000 Rh6DG513200
rosa_wichuraiana	Rw2G038530 Rw6G044440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	104
AatII	GACGTC	1 cut(s)	134
AccB7I	CCANNNNNTGG	1 cut(s)	109
AciI	CCGC	1 cut(s)	204
AcyI	GRCGYC	1 cut(s)	131
AfaI	GTAC	1 cut(s)	214
AfiI	CCNNNNNNNGG	1 cut(s)	109
AgsI	TTSAA	1 cut(s)	263
AhlI	ACTAGT	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	350
AjuI	GAANNNNNNNTTGG	2 cut(s)	234, 266
AluBI	AGCT	2 cut(s)	245, 266
AluI	AGCT	2 cut(s)	245, 266
Ama87I	CYCGRG	1 cut(s)	78
AoxI	GGCC	1 cut(s)	320
Asp700I	GAANNNNTTC	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	112
AsuHPI	GGTGA	3 cut(s)	22, 40, 266
AsuNHI	GCTAGC	1 cut(s)	245
AvaI	CYCGRG	1 cut(s)	78
AvaII	GGWCC	1 cut(s)	112
BccI	CCATC	2 cut(s)	64, 152
BciT130I	CCWGG	1 cut(s)	352
BcuI	ACTAGT	1 cut(s)	14
BfaI	CTAG	3 cut(s)	15, 182, 246
BfoI	RGCGCY	1 cut(s)	165
Bme1390I	CCNGG	1 cut(s)	352
Bme18I	GGWCC	1 cut(s)	112
BmeT110I	CYCGRG	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	352
BmsI	GCATC	1 cut(s)	316
BmtI	GCTAGC	1 cut(s)	249
Bpu10I	CCTNAGC	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse1I	ACTGG	3 cut(s)	38, 156, 214
Bse3DI	GCAATG	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	352
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	3 cut(s)	38, 156, 214
BseRI	GAGGAG	1 cut(s)	318
Bsh1285I	CGRYCG	1 cut(s)	347
BshFI	GGCC	1 cut(s)	322
BsiEI	CGRYCG	1 cut(s)	347
BsiHKCI	CYCGRG	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	109
BsnI	GGCC	1 cut(s)	322
BsoBI	CYCGRG	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	344
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	1 cut(s)	322
BspCNI	CTCAG	1 cut(s)	106
BspOI	GCTAGC	1 cut(s)	249
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	3 cut(s)	38, 156, 214
BssMI	GATC	1 cut(s)	344
BssNI	GRCGYC	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	352
Bst4CI	ACNGT	1 cut(s)	198
BstACI	GRCGYC	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	1 cut(s)	93
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	1 cut(s)	347
BstMBI	GATC	1 cut(s)	344
BstMCI	CGRYCG	1 cut(s)	347
BstNI	CCWGG	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	350
BsuRI	GGCC	1 cut(s)	322
BtsI	GCAGTG	2 cut(s)	165, 227
BtsIMutI	CAGTG	2 cut(s)	165, 227
Cac8I	GCNNGC	1 cut(s)	247
CfoI	GCGC	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	112
CsiI	ACCWGGT	1 cut(s)	350
Csp6I	GTAC	1 cut(s)	213
CviJI	RGCY	5 cut(s)	55, 92, 245, 266, 322
CviKI_1	RGCY	5 cut(s)	55, 92, 245, 266, 322
CviQI	GTAC	1 cut(s)	213
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	1 cut(s)	346
DpnII	GATC	1 cut(s)	344
DrdI	GACNNNNNNGTC	1 cut(s)	104
DseDI	GACNNNNNNGTC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	112
Eco88I	CYCGRG	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	350
FspBI	CTAG	3 cut(s)	15, 182, 246
GlaI	GCGC	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	322
HhaI	GCGC	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HinfI	GANTC	1 cut(s)	293
HphI	GGTGA	3 cut(s)	22, 40, 266
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	298
Hpy188III	TCNNGA	2 cut(s)	95, 115
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	3 cut(s)	44, 133, 136
HpyAV	CCTTC	2 cut(s)	19, 293
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4IV	ACGT	2 cut(s)	42, 131
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	2 cut(s)	42, 131
Hsp92I	GRCGYC	1 cut(s)	131
HspAI	GCGC	1 cut(s)	162
Kzo9I	GATC	1 cut(s)	344
LpnPI	CCDG	8 cut(s)	19, 80, 128, 169, 195, 252, 336, 337
LweI	GCATC	1 cut(s)	316
MabI	ACCWGGT	1 cut(s)	350
MaeI	CTAG	3 cut(s)	15, 182, 246
MaeII	ACGT	2 cut(s)	42, 131
MaeIII	GTNAC	2 cut(s)	10, 225
MalI	GATC	1 cut(s)	346
MboI	GATC	1 cut(s)	344
MluCI	AATT	1 cut(s)	220
MlyI	GAGTC	1 cut(s)	302
MnlI	CCTC	4 cut(s)	82, 211, 296, 299
MroXI	GAANNNNTTC	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	352
MvaI	CCWGG	1 cut(s)	352
NdeII	GATC	1 cut(s)	344
NheI	GCTAGC	1 cut(s)	245
NmuCI	GTSAC	2 cut(s)	10, 225
PdmI	GAANNNNTTC	1 cut(s)	35
PflMI	CCANNNNNTGG	1 cut(s)	109
Ple19I	CGATCG	1 cut(s)	347
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Psp6I	CCWGG	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	350
PspPI	GGNCC	1 cut(s)	112
PsrI	GAACNNNNNNTAC	2 cut(s)	324, 356
PvuI	CGATCG	1 cut(s)	347
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
Sau3AI	GATC	1 cut(s)	344
Sau96I	GGNCC	1 cut(s)	112
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	352
SetI	ASST	7 cut(s)	30, 45, 134, 187, 247, 268, 356
SexAI	ACCWGGT	1 cut(s)	350
SfaNI	GCATC	1 cut(s)	316
SinI	GGWCC	1 cut(s)	112
SpeI	ACTAGT	1 cut(s)	14
Sse9I	AATT	1 cut(s)	220
SsiI	CCGC	1 cut(s)	204
SspMI	CTAG	3 cut(s)	15, 182, 246
StyD4I	CCNGG	1 cut(s)	350
TaaI	ACNGT	1 cut(s)	198
TaiI	ACGT	2 cut(s)	45, 134
TaqI	TCGA	3 cut(s)	39, 59, 347
TasI	AATT	1 cut(s)	220
TscAI	CASTG	2 cut(s)	172, 234
TseFI	GTSAC	2 cut(s)	10, 225
Tsp45I	GTSAC	2 cut(s)	10, 225
TspDTI	ATGAA	1 cut(s)	177
TspRI	CASTG	2 cut(s)	172, 234
Van91I	CCANNNNNTGG	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	112
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	3 cut(s)	15, 182, 246
ZraI	GACGTC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.