AT1G21430

indole-3-pyruvate monooxygenase YUCCA11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005259
Physical Location & Seq
Forward (+)
7500845 .. 7502186
1342 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G21430.1

Sequence Viewer

Length: 1176 bp
ATGGAGAAAGAAATCAAGATTCTGGTTTTGATTATCGGTGCAGGACCAGCCGGTTTAGCAACATCAGCTTGTCTTAACCGGTTGAACATACCAAACATAGTAGTGGAAAGAGATGTTTGCAGTGCCTCTCTGTGGAAAAGAAGGTCTTACGATCGTCTCAAGCTCCACCTCGCAAAGCAATTCTGTCAACTCCCTCACATGCCATTCCCCTCAAACACTCCTACCTTCGTCTCCAAGCTAGGTTTCATCAATTACCTTGACGAATACGCCACACGTTTCAACGTAAACCCTAGGTACAACCGGAACGTCAAATCCGCGTACTTCAAAGATGGTCAATGGATCGTGAAGGTGGTGAACAAAACCACGGCGTTGATAGAAGTTTACTCGGCGAAGTTTATGGTTGCTGCGACGGGAGAGAATGGCGAAGGTGTGATTCCAGAGATTCCGGGGCTTGTAGAGAGCTTTCAAGGAAAGTATTTGCACTCAAGTGAGTACAAGAACGGAGAGAAGTTCGCTGGAAAAGATGTTTTGGTCGTCGGATGTGGAAATTCTGGCATGGAGATTGCTTATGATCTATCTAAGTGCAACGCTAATGTCTCCATCGTTGTTCGTAGCCAGGTGCACGTGTTAACGAGATGTATCGTACGGATAGGAATGTCGTTGCTCAGGTTTTTCCCGGTAAAATTAGTTGACCGTTTGTGTCTATTACTAGCGGAGCTGAGGTTTCGGAATACTTCGAGATATGGGCTTGTAAGACCCAATAATGGCCCATTTCTGAACAAGCTAATCACCGGCCGGTCAGCTACCATTGACGTCGGCTGCGTCGGAGAGATAAAGTCCGGCAAGATTCAGGTTGTGACGTCGATTAAGCGTATAGAAGGGAAGACAGTAGAATTCATCGATGGAAACACCAAAAATGTGGACTCCATTGTCTTCGCAACTGGTTACAAAAGCAGCGTTTCAAAATGGCTTGAGGTCGATGATGGAGATCTGTTCAACGAGAATGGGATGCCGAAACGCGAGTTCCCGGATCACTGGAAGGGGAAGAATGGTTTGTATAGTGCTGGCTTTGGGAAACAAGGCTTGGCTGGTATTTCAAGAGATGCTCGGAACATTGCTAGAGACATTGATTCTCTGGTTTGTGGGAGAAGCAGCAAGAACAAGCTTTCCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
FMO-like Pyr_redox_3

Protein Analysis

391

Amino Acids

43.36

Weight (kDa)

9.57

Isoelectric Point (pI)

34.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMO-like PF00743 9 - 318 7e-27 Flavin-binding monooxygenase-like
Pyr_redox_2 PF07992 9 - 205 2.9e-12 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3 PF13738 10 - 206 4.9e-24 Pyridine nucleotide-disulphide oxidoreductase
Lys_Orn_oxgnase PF13434 73 - 204 4.3e-12 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 929
AatII GACGTC 2 cut(s) 816, 863
AccII CGCG 2 cut(s) 317, 1020
AciI CCGC 2 cut(s) 315, 713
AclWI GGATC 2 cut(s) 347, 1038
AcoI YGGCCR 1 cut(s) 793
AcsI RAATTY 2 cut(s) 547, 893
AcvI CACGTG 1 cut(s) 625
AcyI GRCGYC 2 cut(s) 813, 860
AfaI GTAC 4 cut(s) 296, 320, 494, 645
AfiI CCNNNNNNNGG 2 cut(s) 132, 764
AflIII ACRYGT 2 cut(s) 272, 624
AgeI ACCGGT 1 cut(s) 78
AgsI TTSAA 7 cut(s) 85, 280, 325, 467, 963, 997, 1098
AjnI CCWGG 1 cut(s) 615
AjuI GAANNNNNNNTTGG 4 cut(s) 227, 259, 1067, 1099
AleI CACNNNNGTG 1 cut(s) 486
AloI GAACNNNNNNTCC 3 cut(s) 296, 328, 1151
AluBI AGCT 8 cut(s) 68, 163, 238, 462, 718, 784, 803, 1165
AluI AGCT 8 cut(s) 68, 163, 238, 462, 718, 784, 803, 1165
Alw21I GWGCWC 1 cut(s) 624
Alw26I GTCTC 4 cut(s) 161, 235, 601, 1116
Alw44I GTGCAC 1 cut(s) 620
AlwI GGATC 2 cut(s) 347, 1038
AoxI GGCC 2 cut(s) 766, 793
ApaLI GTGCAC 1 cut(s) 620
ApeKI GCWGC 4 cut(s) 404, 819, 954, 1152
ApoI RAATTY 2 cut(s) 547, 893
AsiGI ACCGGT 1 cut(s) 78
AspA2I CCTAGG 1 cut(s) 290
AspS9I GGNCC 2 cut(s) 44, 767
AsuC2I CCSGG 3 cut(s) 447, 677, 1028
AsuHPI GGTGA 2 cut(s) 364, 781
AvaII GGWCC 1 cut(s) 44
AvrII CCTAGG 1 cut(s) 290
BaeGI GKGCMC 1 cut(s) 624
BbrPI CACGTG 1 cut(s) 625
BbsI GAAGAC 2 cut(s) 890, 925
Bbv12I GWGCWC 1 cut(s) 624
BbvCI CCTCAGC 1 cut(s) 719
BbvI GCAGC 4 cut(s) 391, 806, 966, 1164
BccI CCATC 4 cut(s) 323, 608, 896, 977
BceAI ACGGC 1 cut(s) 381
BciT130I CCWGG 1 cut(s) 617
BcnI CCSGG 3 cut(s) 447, 677, 1028
BcoDI GTCTC 4 cut(s) 161, 235, 601, 1116
BfaI CTAG 4 cut(s) 239, 291, 710, 1119
BglII AGATCT 1 cut(s) 988
BisI GCNGC 4 cut(s) 405, 820, 955, 1153
BlnI CCTAGG 1 cut(s) 290
BlsI GCNGC 4 cut(s) 406, 821, 956, 1154
Bme1390I CCNGG 4 cut(s) 447, 617, 677, 1028
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 2 cut(s) 44, 767
BmrFI CCNGG 4 cut(s) 447, 617, 677, 1028
BmsI GCATC 2 cut(s) 999, 1093
BpiI GAAGAC 2 cut(s) 890, 925
Bpu10I CCTNAGC 2 cut(s) 665, 719
BpuEI CTTGAG 3 cut(s) 143, 469, 992
BpuMI CCSGG 3 cut(s) 447, 677, 1028
Bsa29I ATCGAT 1 cut(s) 900
BsaAI YACGTR 1 cut(s) 625
BsaBI GATNNNNATC 1 cut(s) 987
BsaHI GRCGYC 2 cut(s) 813, 860
BsaJI CCNNGG 3 cut(s) 290, 363, 446
BsaWI WCCGGW 2 cut(s) 78, 300
BsaXI ACNNNNNCTCC 2 cut(s) 707, 737
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 764
Bse118I RCCGGY 4 cut(s) 50, 78, 791, 795
Bse1I ACTGG 2 cut(s) 946, 1040
Bse3DI GCAATG 1 cut(s) 1113
Bse8I GATNNNNATC 1 cut(s) 987
BseBI CCWGG 1 cut(s) 617
BseCI ATCGAT 1 cut(s) 900
BseDI CCNNGG 3 cut(s) 290, 363, 446
BseGI GGATG 2 cut(s) 545, 1014
BseJI GATNNNNATC 1 cut(s) 987
BseLI CCNNNNNNNGG 2 cut(s) 132, 764
BseMI GCAATG 1 cut(s) 1113
BseMII CTCAG 2 cut(s) 679, 710
BseNI ACTGG 2 cut(s) 946, 1040
BseSI GKGCMC 1 cut(s) 624
BseX3I CGGCCG 1 cut(s) 793
BseXI GCAGC 4 cut(s) 391, 806, 966, 1164
BsgI GTGCAG 1 cut(s) 60
Bsh1236I CGCG 2 cut(s) 317, 1020
Bsh1285I CGRYCG 2 cut(s) 154, 796
BshFI GGCC 2 cut(s) 768, 795
BshTI ACCGGT 1 cut(s) 78
BshVI ATCGAT 1 cut(s) 900
BsiEI CGRYCG 2 cut(s) 154, 796
BsiHKAI GWGCWC 1 cut(s) 624
BsiSI CCGG 9 cut(s) 51, 79, 301, 446, 677, 792, 796, 840, 1028
BsiWI CGTACG 1 cut(s) 643
BslI CCNNNNNNNGG 2 cut(s) 132, 764
BsmAI GTCTC 4 cut(s) 161, 235, 601, 1116
BsmBI CGTCTC 2 cut(s) 161, 235
BsnI GGCC 2 cut(s) 768, 795
Bsp1286I GDGCHC 1 cut(s) 624
Bsp143I GATC 5 cut(s) 151, 339, 571, 988, 1030
BspACI CCGC 2 cut(s) 315, 713
BspANI GGCC 2 cut(s) 768, 795
BspCNI CTCAG 2 cut(s) 678, 711
BspDI ATCGAT 1 cut(s) 900
BspFNI CGCG 2 cut(s) 317, 1020
BspPI GGATC 2 cut(s) 347, 1038
BsrDI GCAATG 1 cut(s) 1113
BsrFI RCCGGY 4 cut(s) 50, 78, 791, 795
BsrI ACTGG 2 cut(s) 946, 1040
BssAI RCCGGY 4 cut(s) 50, 78, 791, 795
BssECI CCNNGG 3 cut(s) 290, 363, 446
BssMI GATC 5 cut(s) 151, 339, 571, 988, 1030
BssNI GRCGYC 2 cut(s) 813, 860
BssT1I CCWWGG 1 cut(s) 290
Bst2UI CCWGG 1 cut(s) 617
Bst4CI ACNGT 2 cut(s) 695, 889
BstACI GRCGYC 2 cut(s) 813, 860
BstBAI YACGTR 1 cut(s) 625
BstC8I GCNNGC 1 cut(s) 1066
BstDEI CTNAG 3 cut(s) 579, 665, 719
BstDSI CCRYGG 1 cut(s) 363
BstF5I GGATG 2 cut(s) 545, 1014
BstFNI CGCG 2 cut(s) 317, 1020
BstKTI GATC 5 cut(s) 154, 342, 574, 991, 1033
BstMAI GTCTC 4 cut(s) 161, 235, 601, 1116
BstMBI GATC 5 cut(s) 151, 339, 571, 988, 1030
BstMCI CGRYCG 2 cut(s) 154, 796
BstMWI GCNNNNNNNGC 3 cut(s) 47, 56, 65
BstNI CCWGG 1 cut(s) 617
BstNSI RCATGY 1 cut(s) 202
BstSCI CCNGG 4 cut(s) 445, 615, 675, 1026
BstSLI GKGCMC 1 cut(s) 624
BstUI CGCG 2 cut(s) 317, 1020
BstV1I GCAGC 4 cut(s) 391, 806, 966, 1164
BstV2I GAAGAC 2 cut(s) 890, 925
BstX2I RGATCY 1 cut(s) 988
BstXI CCANNNNNNTGG 1 cut(s) 919
BstYI RGATCY 1 cut(s) 988
BstZI CGGCCG 1 cut(s) 793
Bsu15I ATCGAT 1 cut(s) 900
BsuRI GGCC 2 cut(s) 768, 795
BsuTUI ATCGAT 1 cut(s) 900
BtgI CCRYGG 1 cut(s) 363
BtsCI GGATG 2 cut(s) 545, 1014
BtsI GCAGTG 1 cut(s) 127
BtsIMutI CAGTG 2 cut(s) 127, 1033
Cac8I GCNNGC 1 cut(s) 1066
Cfr10I RCCGGY 4 cut(s) 50, 78, 791, 795
Cfr13I GGNCC 2 cut(s) 44, 767
ClaI ATCGAT 1 cut(s) 900
CseI GACGC 1 cut(s) 811
Csp6I GTAC 4 cut(s) 295, 319, 493, 644
CspAI ACCGGT 1 cut(s) 78
CviAII CATG 2 cut(s) 199, 556
CviQI GTAC 4 cut(s) 295, 319, 493, 644
DdeI CTNAG 3 cut(s) 579, 665, 719
DpnI GATC 5 cut(s) 153, 341, 573, 990, 1032
DpnII GATC 5 cut(s) 151, 339, 571, 988, 1030
DrdI GACNNNNNNGTC 1 cut(s) 929
DseDI GACNNNNNNGTC 1 cut(s) 929
EaeI YGGCCR 1 cut(s) 793
EagI CGGCCG 1 cut(s) 793
EclXI CGGCCG 1 cut(s) 793
Eco130I CCWWGG 1 cut(s) 290
Eco47I GGWCC 1 cut(s) 44
Eco52I CGGCCG 1 cut(s) 793
Eco72I CACGTG 1 cut(s) 625
EcoRI GAATTC 1 cut(s) 893
EcoRII CCWGG 1 cut(s) 615
EcoT14I CCWWGG 1 cut(s) 290
ErhI CCWWGG 1 cut(s) 290
Esp3I CGTCTC 2 cut(s) 161, 235
FaeI CATG 2 cut(s) 202, 559
FaiI YATR 9 cut(s) 89, 98, 200, 398, 557, 570, 744, 875, 1059
FalI AAGNNNNNCTT 2 cut(s) 130, 162
FatI CATG 2 cut(s) 198, 555
Fnu4HI GCNGC 4 cut(s) 405, 820, 955, 1153
FokI GGATG 2 cut(s) 552, 1021
Fsp4HI GCNGC 4 cut(s) 405, 820, 955, 1153
FspBI CTAG 4 cut(s) 239, 291, 710, 1119
GluI GCNGC 4 cut(s) 405, 820, 955, 1153
HaeIII GGCC 2 cut(s) 768, 795
HapII CCGG 9 cut(s) 51, 79, 301, 446, 677, 792, 796, 840, 1028
HgaI GACGC 1 cut(s) 811
Hin1I GRCGYC 2 cut(s) 813, 860
Hin1II CATG 2 cut(s) 202, 559
HincII GTYRAC 3 cut(s) 188, 630, 691
HindII GTYRAC 3 cut(s) 188, 630, 691
HindIII AAGCTT 1 cut(s) 1163
HinfI GANTC 6 cut(s) 19, 433, 442, 847, 923, 1130
HpaI GTTAAC 1 cut(s) 630
HpaII CCGG 9 cut(s) 51, 79, 301, 446, 677, 792, 796, 840, 1028
HphI GGTGA 2 cut(s) 364, 781
Hpy166II GTNNAC 8 cut(s) 188, 286, 355, 382, 622, 630, 691, 922
Hpy188I TCNGA 5 cut(s) 539, 729, 777, 827, 1110
Hpy188III TCNNGA 5 cut(s) 16, 343, 437, 738, 1098
Hpy8I GTNNAC 8 cut(s) 188, 286, 355, 382, 622, 630, 691, 922
Hpy99I CGWCG 5 cut(s) 412, 539, 818, 827, 865
HpyAV CCTTC 6 cut(s) 135, 235, 340, 419, 872, 1033
HpyCH4III ACNGT 2 cut(s) 695, 889
HpyCH4IV ACGT 6 cut(s) 274, 282, 306, 624, 813, 860
HpyCH4V TGCA 5 cut(s) 41, 120, 481, 585, 622
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 56, 65
HpyF3I CTNAG 3 cut(s) 579, 665, 719
HpySE526I ACGT 6 cut(s) 274, 282, 306, 624, 813, 860
Hsp92I GRCGYC 2 cut(s) 813, 860
Hsp92II CATG 2 cut(s) 202, 559
KspAI GTTAAC 1 cut(s) 630
Kzo9I GATC 5 cut(s) 151, 339, 571, 988, 1030
LmnI GCTCC 2 cut(s) 168, 715
Lsp1109I GCAGC 4 cut(s) 391, 806, 966, 1164
LweI GCATC 2 cut(s) 999, 1093
MaeI CTAG 4 cut(s) 239, 291, 710, 1119
MaeII ACGT 6 cut(s) 274, 282, 306, 624, 813, 860
MaeIII GTNAC 2 cut(s) 856, 944
MalI GATC 5 cut(s) 153, 341, 573, 990, 1032
MboI GATC 5 cut(s) 151, 339, 571, 988, 1030
MboII GAAGA 3 cut(s) 895, 925, 1057
MflI RGATCY 1 cut(s) 988
MhlI GDGCHC 1 cut(s) 624
MluCI AATT 5 cut(s) 179, 250, 547, 683, 893
MlyI GAGTC 1 cut(s) 917
MmeI TCCRAC 2 cut(s) 517, 805
MnlI CCTC 6 cut(s) 136, 179, 204, 220, 714, 967
MseI TTAA 3 cut(s) 75, 629, 867
MslI CAYNNNNRTG 2 cut(s) 101, 486
MspI CCGG 9 cut(s) 51, 79, 301, 446, 677, 792, 796, 840, 1028
MspR9I CCNGG 4 cut(s) 447, 617, 677, 1028
MvaI CCWGG 1 cut(s) 617
MvnI CGCG 2 cut(s) 317, 1020
MwoI GCNNNNNNNGC 3 cut(s) 47, 56, 65
NciI CCSGG 3 cut(s) 447, 677, 1028
NdeII GATC 5 cut(s) 151, 339, 571, 988, 1030
NlaIII CATG 2 cut(s) 202, 559
NmeAIII GCCGAG 1 cut(s) 365
NmuCI GTSAC 1 cut(s) 856
NspI RCATGY 1 cut(s) 202
OliI CACNNNNGTG 1 cut(s) 486
PcsI WCGNNNNNNNCGW 1 cut(s) 819
PfeI GAWTC 5 cut(s) 19, 433, 442, 847, 1130
Pfl23II CGTACG 1 cut(s) 643
PfoI TCCNGGA 1 cut(s) 1026
PinAI ACCGGT 1 cut(s) 78
PkrI GCNGC 4 cut(s) 406, 821, 956, 1154
Ple19I CGATCG 1 cut(s) 154
PleI GAGTC 1 cut(s) 917
PmaCI CACGTG 1 cut(s) 625
PmlI CACGTG 1 cut(s) 625
PpsI GAGTC 1 cut(s) 917
Ppu21I YACGTR 1 cut(s) 625
Psp6I CCWGG 1 cut(s) 615
PspCI CACGTG 1 cut(s) 625
PspGI CCWGG 1 cut(s) 615
PspLI CGTACG 1 cut(s) 643
PspPI GGNCC 2 cut(s) 44, 767
PsuI RGATCY 1 cut(s) 988
PvuI CGATCG 1 cut(s) 154
RsaI GTAC 4 cut(s) 296, 320, 494, 645
RsaNI GTAC 4 cut(s) 295, 319, 493, 644
RseI CAYNNNNRTG 2 cut(s) 101, 486
SaqAI TTAA 3 cut(s) 75, 629, 867
SatI GCNGC 4 cut(s) 405, 820, 955, 1153
Sau3AI GATC 5 cut(s) 151, 339, 571, 988, 1030
Sau96I GGNCC 2 cut(s) 44, 767
SchI GAGTC 1 cut(s) 917
ScrFI CCNGG 4 cut(s) 447, 617, 677, 1028
SduI GDGCHC 1 cut(s) 624
SfaNI GCATC 2 cut(s) 999, 1093
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 2 cut(s) 101, 486
SmlI CTYRAG 3 cut(s) 158, 484, 971
SmoI CTYRAG 3 cut(s) 158, 484, 971
Sse9I AATT 5 cut(s) 179, 250, 547, 683, 893
SsiI CCGC 2 cut(s) 315, 713
SspMI CTAG 4 cut(s) 239, 291, 710, 1119
StyD4I CCNGG 4 cut(s) 445, 615, 675, 1026
StyI CCWWGG 1 cut(s) 290
TaaI ACNGT 2 cut(s) 695, 889
TaiI ACGT 6 cut(s) 277, 285, 309, 627, 816, 863
TaqI TCGA 4 cut(s) 737, 863, 900, 978
TasI AATT 5 cut(s) 179, 250, 547, 683, 893
TatI WGTACW 1 cut(s) 492
TfiI GAWTC 5 cut(s) 19, 433, 442, 847, 1130
Tru1I TTAA 3 cut(s) 75, 629, 867
Tru9I TTAA 3 cut(s) 75, 629, 867
TscAI CASTG 2 cut(s) 127, 1040
TseFI GTSAC 1 cut(s) 856
TseI GCWGC 4 cut(s) 404, 819, 954, 1152
Tsp45I GTSAC 1 cut(s) 856
TspDTI ATGAA 2 cut(s) 235, 886
TspGWI ACGGA 2 cut(s) 516, 661
TspRI CASTG 2 cut(s) 127, 1040
VneI GTGCAC 1 cut(s) 620
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 2 cut(s) 547, 893
XceI RCATGY 1 cut(s) 202
XmaJI CCTAGG 1 cut(s) 290
XspI CTAG 4 cut(s) 239, 291, 710, 1119
ZraI GACGTC 2 cut(s) 814, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.