Rw3G023670

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0005259
Physical Location & Seq
Reverse (-)
29718697 .. 29720648
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G023670.1

Sequence Viewer

Length: 1173 bp
ATGGAGGAAGTAGAGGTAGTCATAGTAGGTGCAGGTCCTGCTGGTCTAGCAACCTCTGCATGTCTTAACCGCCTCAATATCTCAAATGTCATACTCGAAAGAGAAGATTGCCATGCTTCTCTTTGGAAGAGTAGGACATATGATCGTTTGAAGCTTCACTTAGCAAAGCAATTTTGTGAACTACCCTATATGCCCTTTCCTAAAAATGCACCCACATATATTCCTAGGAGAGACTTTGTTCAATACCTGGATACTTACGTATCCACCTTCAACATAAACCCTATGTACCACAGAAGTGTGGAGACTGCTTTTTACAATGAGAATGTAGAAAAATGGTATGTCGTAGTCAACAACACACGATTAGGTGTAAAAGAAACATATTATGGGAAGTTTCTTGTGGTAGCAAGTGGTGAAAATGGTGAAGGCTATGTTCCTGAAACAAAAGGTTTGGATACCTTTAACGGCGAATATATTCATTCGAGCAAGTATGAAAATGGCATGAAGTACCGTGGAAAAGATGTTTTGGTTGTCGGATCAGGAAATTCGGGAATGGAAATTGCCTACGACTTGTCTAATTACGGCGCAAATACTTTCATTGTTGTTCGTAGCCCGGTACATGTTCTTACCAAAGAAATTGTGTTCTTTGGAATGGTTTTATCCAAATATCTTCCGGTTAAAGTTATCGATGGCATTGTCCTGATTTTAGGGAAATTGAAATTTGGAAATTTATCGAAGTATGGAATTCATAAACCAAAAATAGGGCCATTTTATCTCAAGGAACACGAGGGTCAAGCCCCCATCATCGATGTTGGGACCATTGAAAAGATCAAGAGTGACGAAATCAAGGTTTTGCCTTCCATAACAAGCATAGAAGGAAATGAAATCCGATTTGAGAATGGCTACCTTAAAAGTTATGATGCTATAATATTTGCTACGGGCTATAAAAGCACTGTGCTAAAGTGGCTCAAGGATGACAATCATCTCTTTAATGACAATGGAATGCCGAATAAAAGTTTTCCGAACCACTGGAAGTCAGAAAATGGTCTTTACTGTGTTGGTTTCTCAAGGCGTGGACTATTTGGAATTTCGCATGATGCACTAAAAATAACAAATGATATCAATCACTCTCTCTTGGTCGGAACAAAAAGGGGATTTGATCATTCAGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

390

Amino Acids

44.05

Weight (kDa)

7.67

Isoelectric Point (pI)

33.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 3 - 47 2.6e-06 FAD binding domain
FMO-like PF00743 5 - 316 4.2e-21 Flavin-binding monooxygenase-like
Pyr_redox_2 PF07992 5 - 204 1.9e-12 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3 PF13738 7 - 204 1.2e-22 Pyridine nucleotide-disulphide oxidoreductase
Lys_Orn_oxgnase PF13434 68 - 196 2.4e-12 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 23
AciI CCGC 1 cut(s) 70
AclWI GGATC 1 cut(s) 541
AcsI RAATTY 5 cut(s) 541, 716, 724, 741, 1083
AfaI GTAC 3 cut(s) 287, 506, 615
AfiI CCNNNNNNNGG 1 cut(s) 758
AflIII ACRYGT 1 cut(s) 616
AgsI TTSAA 5 cut(s) 151, 242, 271, 715, 821
AjnI CCWGG 1 cut(s) 246
AleI CACNNNNGTG 1 cut(s) 294
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw26I GTCTC 2 cut(s) 225, 296
AlwI GGATC 1 cut(s) 541
AlwNI CAGNNNCTG 1 cut(s) 38
AoxI GGCC 1 cut(s) 761
ApoI RAATTY 5 cut(s) 541, 716, 724, 741, 1083
Asp700I GAANNNNTTC 1 cut(s) 471
AspA2I CCTAGG 1 cut(s) 224
AspLEI GCGC 1 cut(s) 584
AspS9I GGNCC 3 cut(s) 35, 761, 813
AsuC2I CCSGG 1 cut(s) 611
AsuHPI GGTGA 2 cut(s) 422, 431
AvaII GGWCC 2 cut(s) 35, 813
AvrII CCTAGG 1 cut(s) 224
BaeI ACNNNNGTAYC 4 cut(s) 243, 243, 276, 276
BauI CACGAG 1 cut(s) 782
BccI CCATC 2 cut(s) 680, 806
BceAI ACGGC 2 cut(s) 478, 595
BciT130I CCWGG 1 cut(s) 248
BciVI GTATCC 3 cut(s) 244, 271, 445
BclI TGATCA 1 cut(s) 1156
BcnI CCSGG 1 cut(s) 611
BcoDI GTCTC 2 cut(s) 225, 296
BfaI CTAG 2 cut(s) 47, 225
BfuAI ACCTGC 1 cut(s) 23
BfuI GTATCC 3 cut(s) 244, 271, 445
BlnI CCTAGG 1 cut(s) 224
Bme1390I CCNGG 2 cut(s) 248, 611
Bme18I GGWCC 2 cut(s) 35, 813
BmgT120I GGNCC 3 cut(s) 35, 761, 813
BmiI GGNNCC 1 cut(s) 814
BmrFI CCNGG 2 cut(s) 248, 611
BmsI GCATC 2 cut(s) 907, 1084
BpuEI CTTGAG 3 cut(s) 758, 950, 1048
BpuMI CCSGG 1 cut(s) 611
Bsa29I ATCGAT 2 cut(s) 684, 804
BsaAI YACGTR 1 cut(s) 259
BsaBI GATNNNNATC 2 cut(s) 975, 1119
BsaJI CCNNGG 2 cut(s) 224, 508
BsaWI WCCGGW 1 cut(s) 670
Bsc4I CCNNNNNNNGG 1 cut(s) 758
Bse1I ACTGG 1 cut(s) 1031
Bse8I GATNNNNATC 2 cut(s) 975, 1119
BseBI CCWGG 1 cut(s) 248
BseCI ATCGAT 2 cut(s) 684, 804
BseDI CCNNGG 2 cut(s) 224, 508
BseGI GGATG 1 cut(s) 976
BseJI GATNNNNATC 2 cut(s) 975, 1119
BseLI CCNNNNNNNGG 1 cut(s) 758
BseNI ACTGG 1 cut(s) 1031
BsgI GTGCAG 1 cut(s) 51
BshFI GGCC 1 cut(s) 763
BshVI ATCGAT 2 cut(s) 684, 804
BsiSI CCGG 2 cut(s) 611, 671
BslFI GGGAC 1 cut(s) 826
BslI CCNNNNNNNGG 1 cut(s) 758
BsmAI GTCTC 2 cut(s) 225, 296
BsmFI GGGAC 1 cut(s) 826
BsmI GAATGC 1 cut(s) 1005
BsnI GGCC 1 cut(s) 763
Bsp143I GATC 4 cut(s) 142, 533, 825, 1156
BspACI CCGC 1 cut(s) 70
BspANI GGCC 1 cut(s) 763
BspDI ATCGAT 2 cut(s) 684, 804
BspLI GGNNCC 1 cut(s) 814
BspMI ACCTGC 1 cut(s) 23
BspPI GGATC 1 cut(s) 541
BsrI ACTGG 1 cut(s) 1031
BssECI CCNNGG 2 cut(s) 224, 508
BssMI GATC 4 cut(s) 142, 533, 825, 1156
BssSI CACGAG 1 cut(s) 782
BssT1I CCWWGG 1 cut(s) 224
Bst2BI CACGAG 1 cut(s) 782
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 3 cut(s) 509, 952, 1052
Bst6I CTCTTC 1 cut(s) 122
BstAPI GCANNNNNTGC 2 cut(s) 38, 56
BstBAI YACGTR 1 cut(s) 259
BstDEI CTNAG 1 cut(s) 160
BstDSI CCRYGG 1 cut(s) 508
BstF5I GGATG 1 cut(s) 976
BstHHI GCGC 1 cut(s) 584
BstKTI GATC 4 cut(s) 145, 536, 828, 1159
BstMAI GTCTC 2 cut(s) 225, 296
BstMBI GATC 4 cut(s) 142, 533, 825, 1156
BstMWI GCNNNNNNNGC 5 cut(s) 38, 47, 56, 945, 961
BstNI CCWGG 1 cut(s) 248
BstNSI RCATGY 2 cut(s) 63, 620
BstSCI CCNGG 2 cut(s) 246, 609
BstSNI TACGTA 1 cut(s) 259
Bsu15I ATCGAT 2 cut(s) 684, 804
BsuI GTATCC 3 cut(s) 244, 271, 445
BsuRI GGCC 1 cut(s) 763
BsuTUI ATCGAT 2 cut(s) 684, 804
BtgI CCRYGG 1 cut(s) 508
BtsCI GGATG 1 cut(s) 976
BtsIMutI CAGTG 2 cut(s) 948, 1024
BveI ACCTGC 1 cut(s) 23
CaiI CAGNNNCTG 1 cut(s) 38
CfoI GCGC 1 cut(s) 584
Cfr13I GGNCC 3 cut(s) 35, 761, 813
ClaI ATCGAT 2 cut(s) 684, 804
Csp6I GTAC 3 cut(s) 286, 505, 614
CviAII CATG 5 cut(s) 60, 113, 499, 617, 1091
CviJI RGCY 8 cut(s) 154, 426, 609, 763, 794, 900, 939, 964
CviKI_1 RGCY 8 cut(s) 154, 426, 609, 763, 794, 900, 939, 964
CviQI GTAC 3 cut(s) 286, 505, 614
DdeI CTNAG 1 cut(s) 160
DpnI GATC 4 cut(s) 144, 535, 827, 1158
DpnII GATC 4 cut(s) 142, 533, 825, 1156
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Eco105I TACGTA 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 224
Eco32I GATATC 1 cut(s) 1117
Eco47I GGWCC 2 cut(s) 35, 813
EcoO109I RGGNCCY 1 cut(s) 35
EcoRI GAATTC 1 cut(s) 741
EcoRII CCWGG 1 cut(s) 246
EcoRV GATATC 1 cut(s) 1117
EcoT14I CCWWGG 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 224
FaeI CATG 5 cut(s) 63, 116, 502, 620, 1094
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FaqI GGGAC 1 cut(s) 826
FatI CATG 5 cut(s) 59, 112, 498, 616, 1090
FauNDI CATATG 1 cut(s) 139
FbaI TGATCA 1 cut(s) 1156
FokI GGATG 1 cut(s) 983
FspBI CTAG 2 cut(s) 47, 225
GlaI GCGC 1 cut(s) 583
HaeIII GGCC 1 cut(s) 763
HapII CCGG 2 cut(s) 611, 671
HhaI GCGC 1 cut(s) 584
Hin1II CATG 5 cut(s) 63, 116, 502, 620, 1094
Hin6I GCGC 1 cut(s) 582
HinP1I GCGC 1 cut(s) 582
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HindIII AAGCTT 1 cut(s) 152
HpaII CCGG 2 cut(s) 611, 671
HphI GGTGA 2 cut(s) 422, 431
Hpy166II GTNNAC 3 cut(s) 179, 349, 1073
Hpy188I TCNGA 6 cut(s) 533, 887, 1020, 1036, 1139, 1165
Hpy188III TCNNGA 5 cut(s) 434, 537, 546, 697, 829
Hpy8I GTNNAC 3 cut(s) 179, 349, 1073
HpyAV CCTTC 4 cut(s) 277, 416, 864, 866
HpyCH4III ACNGT 3 cut(s) 509, 952, 1052
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 4 cut(s) 32, 59, 209, 1097
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 47, 56, 945, 961
HpyF3I CTNAG 1 cut(s) 160
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 5 cut(s) 63, 116, 502, 620, 1094
HspAI GCGC 1 cut(s) 582
Ksp22I TGATCA 1 cut(s) 1156
Kzo9I GATC 4 cut(s) 142, 533, 825, 1156
LweI GCATC 2 cut(s) 907, 1084
MaeI CTAG 2 cut(s) 47, 225
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 833
MalI GATC 4 cut(s) 144, 535, 827, 1158
MboI GATC 4 cut(s) 142, 533, 825, 1156
MboII GAAGA 3 cut(s) 116, 139, 659
MmeI TCCRAC 2 cut(s) 511, 1117
MnlI CCTC 4 cut(s) 7, 64, 83, 778
MroXI GAANNNNTTC 1 cut(s) 471
MseI TTAA 6 cut(s) 66, 459, 675, 906, 987, 1171
MslI CAYNNNNRTG 1 cut(s) 294
MspI CCGG 2 cut(s) 611, 671
MspR9I CCNGG 2 cut(s) 248, 611
Mva1269I GAATGC 1 cut(s) 1005
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 5 cut(s) 38, 47, 56, 945, 961
NciI CCSGG 1 cut(s) 611
NdeI CATATG 1 cut(s) 139
NdeII GATC 4 cut(s) 142, 533, 825, 1156
NlaIII CATG 5 cut(s) 63, 116, 502, 620, 1094
NlaIV GGNNCC 1 cut(s) 814
NmuCI GTSAC 1 cut(s) 833
NspI RCATGY 2 cut(s) 63, 620
OliI CACNNNNGTG 1 cut(s) 294
PciI ACATGT 1 cut(s) 616
PctI GAATGC 1 cut(s) 1005
PdmI GAANNNNTTC 1 cut(s) 471
Ppu21I YACGTR 1 cut(s) 259
PpuMI RGGWCCY 1 cut(s) 35
PscI ACATGT 1 cut(s) 616
Psp5II RGGWCCY 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 1 cut(s) 814
PspPI GGNCC 3 cut(s) 35, 761, 813
PspPPI RGGWCCY 1 cut(s) 35
PstNI CAGNNNCTG 1 cut(s) 38
RsaI GTAC 3 cut(s) 287, 506, 615
RsaNI GTAC 3 cut(s) 286, 505, 614
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 6 cut(s) 66, 459, 675, 906, 987, 1171
Sau3AI GATC 4 cut(s) 142, 533, 825, 1156
Sau96I GGNCC 3 cut(s) 35, 761, 813
ScrFI CCNGG 2 cut(s) 248, 611
SfaNI GCATC 2 cut(s) 907, 1084
SinI GGWCC 2 cut(s) 35, 813
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 3 cut(s) 773, 965, 1063
SmoI CTYRAG 3 cut(s) 773, 965, 1063
SnaBI TACGTA 1 cut(s) 259
SsiI CCGC 1 cut(s) 70
SspI AATATT 1 cut(s) 927
SspMI CTAG 2 cut(s) 47, 225
StyD4I CCNGG 2 cut(s) 246, 609
StyI CCWWGG 1 cut(s) 224
TaaI ACNGT 3 cut(s) 509, 952, 1052
TaiI ACGT 1 cut(s) 261
TaqI TCGA 5 cut(s) 96, 479, 684, 731, 804
Tru1I TTAA 6 cut(s) 66, 459, 675, 906, 987, 1171
Tru9I TTAA 6 cut(s) 66, 459, 675, 906, 987, 1171
TscAI CASTG 2 cut(s) 955, 1031
TseFI GTSAC 1 cut(s) 833
Tsp45I GTSAC 1 cut(s) 833
TspDTI ATGAA 6 cut(s) 464, 504, 515, 583, 734, 894
TspRI CASTG 2 cut(s) 955, 1031
VpaK11BI GGWCC 2 cut(s) 35, 813
XapI RAATTY 5 cut(s) 541, 716, 724, 741, 1083
XceI RCATGY 2 cut(s) 63, 620
XmaJI CCTAGG 1 cut(s) 224
XmnI GAANNNNTTC 1 cut(s) 471
XspI CTAG 2 cut(s) 47, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.