RLG00000023184

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0005259
Physical Location & Seq
Forward (+)
19600872 .. 19603184
2313 bp
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UTR
Exon/CDS
Intron
RLM00000023184

Sequence Viewer

Length: 1137 bp
ATGGAGGAAGTAGAGGTAGTCATAGTAGGTGCAGGTCCTGCTGGTCTAGCAACCTCTGCATGTCTTAACCGCCTCAATATCTCAAATGTCATACTCGAAAGAGAAGATTGCTATGCTTCTCTTTGGAAGAATAGGACATATGATCGTTTGAAGCTTCACTTAGCAAAGCAATTTTGTGAACTACCCTATATGCCCTTTCCTAAAAATGCACCCACATATATTCCTAGGAGAGAGTTTGTTCAATACCTAGATACTTACGTATCCACCTTCAACATAAACCCTATGTACCACAGAAGTGTGGAGACTGCTTTTTACAGTGAGAATGTAGAAAAATGGTATGTCGTAGTCAACAACACACGATTAGGTGTAAAAGAAACATATTATGGGAAGTTTCTTGTGGTAGCAAGTGGAGAAAATGGTGAAGGCTATGTTCCTGAAATAAAAGGTTTGGATACCTTTAACGGCGAATACATTCATTCGAGCAAGTATGAAAATGGCATGAAGTACTGTGGGAAAGATGTTTTGGTTGTCGGATCAGGAAATTCGGGAATGGAAATTGCCTACGACTTATCTAATTACGGCGCAAATACTTCCATGGTTATTCGTAGCTCGGTACATGTTCTTACCAAAGAAATTGTGTTCTTTGGAATGGTTTTATCCAAATATCTTCCGGTTAAAGTTATTGATGGCATTGTCCTGATCTTAGGGAAATTGAAATTTGGAAATTTATCGAAGTATGGAATTCATAAACCAACAATAGGGCCATTTTATCTCAAGGAACACGAGGGTCAAGCCCCCATCATCGATGTTGGGACCATTGAAAAGATCAAGAGTGACGAAATCAAGGTTTTGCCATCCATAACAAGCATAGAAGGAAAGGAAATCCGATTTGAGAATGGCTACCTTAAAAGTTATGATGCTATAATATTTGCTACAGGCTATAAAAGCACTGATGACAATTATCTCTTTAATGACAATGGAATGCCGAATAAAAGTTTTCCGAACCACTGGAAGTCAGAAAATGGTCTTTATTGTGCTGGTTTCTCAAGGCGTGGACTATTTGGAATTTCGCATGATGCACTGAAAATAACAAATGATATCAATTTCTCTCTTGGTCGGAACAAAAAGGGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

379

Amino Acids

42.55

Weight (kDa)

8.06

Isoelectric Point (pI)

33.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 3 - 36 9.8e-06 FAD binding domain
FMO-like PF00743 5 - 315 1.7e-19 Flavin-binding monooxygenase-like
Pyr_redox_2 PF07992 5 - 204 1.2e-12 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3 PF13738 7 - 204 2e-24 Pyridine nucleotide-disulphide oxidoreductase
Lys_Orn_oxgnase PF13434 68 - 199 9.7e-13 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 23
AciI CCGC 1 cut(s) 70
AclWI GGATC 1 cut(s) 541
AcsI RAATTY 5 cut(s) 541, 716, 724, 741, 1065
AfaI GTAC 3 cut(s) 287, 506, 615
AfiI CCNNNNNNNGG 1 cut(s) 758
AflIII ACRYGT 1 cut(s) 616
AgsI TTSAA 5 cut(s) 151, 242, 271, 715, 821
AjuI GAANNNNNNNTTGG 2 cut(s) 506, 538
AleI CACNNNNGTG 1 cut(s) 294
AluBI AGCT 2 cut(s) 154, 609
AluI AGCT 2 cut(s) 154, 609
Alw26I GTCTC 1 cut(s) 296
AlwI GGATC 1 cut(s) 541
AlwNI CAGNNNCTG 1 cut(s) 38
AoxI GGCC 1 cut(s) 761
ApoI RAATTY 5 cut(s) 541, 716, 724, 741, 1065
Asp700I GAANNNNTTC 1 cut(s) 471
AspA2I CCTAGG 1 cut(s) 224
AspLEI GCGC 1 cut(s) 584
AspS9I GGNCC 3 cut(s) 35, 761, 813
AsuHPI GGTGA 1 cut(s) 431
AvaII GGWCC 2 cut(s) 35, 813
AvrII CCTAGG 1 cut(s) 224
BaeI ACNNNNGTAYC 4 cut(s) 243, 243, 276, 276
BauI CACGAG 1 cut(s) 782
BccI CCATC 3 cut(s) 680, 806, 862
BceAI ACGGC 2 cut(s) 478, 595
BciVI GTATCC 2 cut(s) 271, 445
BcoDI GTCTC 1 cut(s) 296
BfaI CTAG 3 cut(s) 47, 225, 248
BfmI CTRYAG 1 cut(s) 933
BfuAI ACCTGC 1 cut(s) 23
BfuI GTATCC 2 cut(s) 271, 445
BlnI CCTAGG 1 cut(s) 224
BmcAI AGTACT 1 cut(s) 506
Bme18I GGWCC 2 cut(s) 35, 813
BmgT120I GGNCC 3 cut(s) 35, 761, 813
BmiI GGNNCC 1 cut(s) 814
BmsI GCATC 2 cut(s) 907, 1066
BpuEI CTTGAG 2 cut(s) 758, 1030
Bsa29I ATCGAT 1 cut(s) 804
BsaAI YACGTR 1 cut(s) 259
BsaJI CCNNGG 2 cut(s) 224, 594
BsaWI WCCGGW 1 cut(s) 670
Bsc4I CCNNNNNNNGG 1 cut(s) 758
Bse1I ACTGG 1 cut(s) 1013
BseCI ATCGAT 1 cut(s) 804
BseDI CCNNGG 2 cut(s) 224, 594
BseGI GGATG 1 cut(s) 854
BseLI CCNNNNNNNGG 1 cut(s) 758
BseNI ACTGG 1 cut(s) 1013
BsgI GTGCAG 1 cut(s) 51
BshFI GGCC 1 cut(s) 763
BshVI ATCGAT 1 cut(s) 804
BsiSI CCGG 1 cut(s) 671
BslFI GGGAC 1 cut(s) 826
BslI CCNNNNNNNGG 1 cut(s) 758
BsmAI GTCTC 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 826
BsmI GAATGC 1 cut(s) 987
BsnI GGCC 1 cut(s) 763
Bsp143I GATC 4 cut(s) 142, 533, 699, 825
Bsp19I CCATGG 1 cut(s) 594
BspACI CCGC 1 cut(s) 70
BspANI GGCC 1 cut(s) 763
BspDI ATCGAT 1 cut(s) 804
BspLI GGNNCC 1 cut(s) 814
BspMI ACCTGC 1 cut(s) 23
BspPI GGATC 1 cut(s) 541
BsrI ACTGG 1 cut(s) 1013
BssECI CCNNGG 2 cut(s) 224, 594
BssMI GATC 4 cut(s) 142, 533, 699, 825
BssSI CACGAG 1 cut(s) 782
BssT1I CCWWGG 2 cut(s) 224, 594
Bst2BI CACGAG 1 cut(s) 782
Bst4CI ACNGT 2 cut(s) 317, 509
BstAPI GCANNNNNTGC 2 cut(s) 38, 56
BstBAI YACGTR 1 cut(s) 259
BstDEI CTNAG 2 cut(s) 160, 703
BstDSI CCRYGG 1 cut(s) 594
BstF5I GGATG 1 cut(s) 854
BstHHI GCGC 1 cut(s) 584
BstKTI GATC 4 cut(s) 145, 536, 702, 828
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 4 cut(s) 142, 533, 699, 825
BstMWI GCNNNNNNNGC 4 cut(s) 38, 47, 56, 945
BstNSI RCATGY 2 cut(s) 63, 620
BstSFI CTRYAG 1 cut(s) 933
BstSNI TACGTA 1 cut(s) 259
Bsu15I ATCGAT 1 cut(s) 804
BsuI GTATCC 2 cut(s) 271, 445
BsuRI GGCC 1 cut(s) 763
BsuTUI ATCGAT 1 cut(s) 804
BtgI CCRYGG 1 cut(s) 594
BtsCI GGATG 1 cut(s) 854
BtsIMutI CAGTG 4 cut(s) 322, 948, 1006, 1079
BveI ACCTGC 1 cut(s) 23
CaiI CAGNNNCTG 1 cut(s) 38
CfoI GCGC 1 cut(s) 584
Cfr13I GGNCC 3 cut(s) 35, 761, 813
ClaI ATCGAT 1 cut(s) 804
Csp6I GTAC 3 cut(s) 286, 505, 614
CviAII CATG 5 cut(s) 60, 499, 595, 617, 1073
CviJI RGCY 7 cut(s) 154, 426, 609, 763, 794, 900, 939
CviKI_1 RGCY 7 cut(s) 154, 426, 609, 763, 794, 900, 939
CviQI GTAC 3 cut(s) 286, 505, 614
DdeI CTNAG 2 cut(s) 160, 703
DpnI GATC 4 cut(s) 144, 535, 701, 827
DpnII GATC 4 cut(s) 142, 533, 699, 825
Eco105I TACGTA 1 cut(s) 259
Eco130I CCWWGG 2 cut(s) 224, 594
Eco32I GATATC 1 cut(s) 1099
Eco47I GGWCC 2 cut(s) 35, 813
EcoO109I RGGNCCY 1 cut(s) 35
EcoRI GAATTC 1 cut(s) 741
EcoRV GATATC 1 cut(s) 1099
EcoT14I CCWWGG 2 cut(s) 224, 594
ErhI CCWWGG 2 cut(s) 224, 594
FaeI CATG 5 cut(s) 63, 502, 598, 620, 1076
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FaqI GGGAC 1 cut(s) 826
FatI CATG 5 cut(s) 59, 498, 594, 616, 1072
FauNDI CATATG 1 cut(s) 139
FokI GGATG 1 cut(s) 841
FspBI CTAG 3 cut(s) 47, 225, 248
GlaI GCGC 1 cut(s) 583
HaeIII GGCC 1 cut(s) 763
HapII CCGG 1 cut(s) 671
HhaI GCGC 1 cut(s) 584
Hin1II CATG 5 cut(s) 63, 502, 598, 620, 1076
Hin6I GCGC 1 cut(s) 582
HinP1I GCGC 1 cut(s) 582
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HindIII AAGCTT 1 cut(s) 152
HpaII CCGG 1 cut(s) 671
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 3 cut(s) 179, 349, 1055
Hpy188I TCNGA 5 cut(s) 533, 887, 1002, 1018, 1119
Hpy188III TCNNGA 5 cut(s) 434, 537, 546, 697, 829
Hpy8I GTNNAC 3 cut(s) 179, 349, 1055
HpyAV CCTTC 3 cut(s) 277, 416, 866
HpyCH4III ACNGT 2 cut(s) 317, 509
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 4 cut(s) 32, 59, 209, 1079
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 47, 56, 945
HpyF3I CTNAG 2 cut(s) 160, 703
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 5 cut(s) 63, 502, 598, 620, 1076
HspAI GCGC 1 cut(s) 582
Kzo9I GATC 4 cut(s) 142, 533, 699, 825
LweI GCATC 2 cut(s) 907, 1066
MaeI CTAG 3 cut(s) 47, 225, 248
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 833
MalI GATC 4 cut(s) 144, 535, 701, 827
MboI GATC 4 cut(s) 142, 533, 699, 825
MboII GAAGA 3 cut(s) 116, 139, 659
MmeI TCCRAC 2 cut(s) 511, 1097
MnlI CCTC 4 cut(s) 7, 64, 83, 778
MroXI GAANNNNTTC 1 cut(s) 471
MseI TTAA 5 cut(s) 66, 459, 675, 906, 969
MslI CAYNNNNRTG 1 cut(s) 294
MspI CCGG 1 cut(s) 671
Mva1269I GAATGC 1 cut(s) 987
MwoI GCNNNNNNNGC 4 cut(s) 38, 47, 56, 945
NcoI CCATGG 1 cut(s) 594
NdeI CATATG 1 cut(s) 139
NdeII GATC 4 cut(s) 142, 533, 699, 825
NlaIII CATG 5 cut(s) 63, 502, 598, 620, 1076
NlaIV GGNNCC 1 cut(s) 814
NmuCI GTSAC 1 cut(s) 833
NspI RCATGY 2 cut(s) 63, 620
OliI CACNNNNGTG 1 cut(s) 294
PciI ACATGT 1 cut(s) 616
PctI GAATGC 1 cut(s) 987
PdmI GAANNNNTTC 1 cut(s) 471
Ppu21I YACGTR 1 cut(s) 259
PpuMI RGGWCCY 1 cut(s) 35
PscI ACATGT 1 cut(s) 616
Psp5II RGGWCCY 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 814
PspPI GGNCC 3 cut(s) 35, 761, 813
PspPPI RGGWCCY 1 cut(s) 35
PstNI CAGNNNCTG 1 cut(s) 38
RsaI GTAC 3 cut(s) 287, 506, 615
RsaNI GTAC 3 cut(s) 286, 505, 614
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 5 cut(s) 66, 459, 675, 906, 969
Sau3AI GATC 4 cut(s) 142, 533, 699, 825
Sau96I GGNCC 3 cut(s) 35, 761, 813
ScaI AGTACT 1 cut(s) 506
SfaNI GCATC 2 cut(s) 907, 1066
SfcI CTRYAG 1 cut(s) 933
SinI GGWCC 2 cut(s) 35, 813
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 2 cut(s) 773, 1045
SmoI CTYRAG 2 cut(s) 773, 1045
SnaBI TACGTA 1 cut(s) 259
SsiI CCGC 1 cut(s) 70
SspI AATATT 1 cut(s) 927
SspMI CTAG 3 cut(s) 47, 225, 248
StyI CCWWGG 2 cut(s) 224, 594
TaaI ACNGT 2 cut(s) 317, 509
TaiI ACGT 1 cut(s) 261
TaqI TCGA 4 cut(s) 96, 479, 731, 804
TatI WGTACW 1 cut(s) 504
Tru1I TTAA 5 cut(s) 66, 459, 675, 906, 969
Tru9I TTAA 5 cut(s) 66, 459, 675, 906, 969
TscAI CASTG 4 cut(s) 322, 955, 1013, 1086
TseFI GTSAC 1 cut(s) 833
Tsp45I GTSAC 1 cut(s) 833
TspDTI ATGAA 4 cut(s) 464, 504, 515, 734
TspRI CASTG 4 cut(s) 322, 955, 1013, 1086
VpaK11BI GGWCC 2 cut(s) 35, 813
XapI RAATTY 5 cut(s) 541, 716, 724, 741, 1065
XceI RCATGY 2 cut(s) 63, 620
XmaJI CCTAGG 1 cut(s) 224
XmnI GAANNNNTTC 1 cut(s) 471
XspI CTAG 3 cut(s) 47, 225, 248
ZrmI AGTACT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.