Rh4BG383800

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0005259
Physical Location & Seq
Reverse (-)
53877664 .. 53878122
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG383800.1

Sequence Viewer

Length: 459 bp
ATGCCTTTCCCTAAAAATGCACCCACATATGTTCCTAGGAAAGAGTTTATTCAATACTTGGATACTTATGTGTCCACTTTCAAGATAAACCCTCTGTACCACAGAAGTGTGCAGGCTGCTTTTTATGATGAGGATGTGGAAAAATGGAGTGTCCTTGTCAACAACACAAAACAGGGTGTACAAGAAAGTTACTACGGGAAATCTCTTGTGGTTGCGACCGGAGAAAATAGTGAAGGCTATTTTCCTCAAACGAAAGGATTGGGTAGCTTTAAAGGCGAAATCATTCATTCAAGTGAGTATGGAAATGGCAAGAAGTACCGTGGGAAAAATGTTTTAGTTGTTGGAGGTGGAAATTCTGGAATGGAAATTGCCTACGACTTATCAAATTTCGGCGCAAATACTTCTATTGTTGTCCGTACCCGGGTAATATTTCTCTTCTTCTCTCTGCCTCCACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

152

Amino Acids

17.01

Weight (kDa)

9.0

Isoelectric Point (pI)

29.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMO-like PF00743 2 - 137 9.5e-15 Flavin-binding monooxygenase-like
Lys_Orn_oxgnase PF13434 6 - 140 3.1e-15 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
Pyr_redox_3 PF13738 9 - 141 5.6e-15 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_2 PF07992 47 - 141 7.5e-12 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox PF00070 110 - 141 5.4e-06 Pyridine nucleotide-disulphide oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 352, 385
AfaI GTAC 4 cut(s) 98, 180, 317, 418
AfiI CCNNNNNNNGG 1 cut(s) 421
AgsI TTSAA 3 cut(s) 53, 82, 291
AleI CACNNNNGTG 1 cut(s) 105
AluBI AGCT 1 cut(s) 267
AluI AGCT 1 cut(s) 267
Ama87I CYCGRG 1 cut(s) 420
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 2 cut(s) 352, 385
Asp700I GAANNNNTTC 1 cut(s) 282
AspA2I CCTAGG 1 cut(s) 35
AspLEI GCGC 1 cut(s) 395
AsuC2I CCSGG 2 cut(s) 421, 422
AvaI CYCGRG 1 cut(s) 420
AvrII CCTAGG 1 cut(s) 35
BaeI ACNNNNGTAYC 2 cut(s) 54, 87
BbvI GCAGC 1 cut(s) 103
BciVI GTATCC 1 cut(s) 55
BcnI CCSGG 2 cut(s) 421, 422
BfaI CTAG 1 cut(s) 36
BfuI GTATCC 1 cut(s) 55
BisI GCNGC 1 cut(s) 117
BlnI CCTAGG 1 cut(s) 35
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 2 cut(s) 421, 422
BmeT110I CYCGRG 1 cut(s) 420
BmrFI CCNGG 2 cut(s) 421, 422
BpuMI CCSGG 2 cut(s) 421, 422
BsaJI CCNNGG 3 cut(s) 35, 319, 420
BsaWI WCCGGW 1 cut(s) 218
Bsc4I CCNNNNNNNGG 1 cut(s) 421
BseDI CCNNGG 3 cut(s) 35, 319, 420
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 421
BseXI GCAGC 1 cut(s) 103
BsgI GTGCAG 1 cut(s) 131
Bsh1285I CGRYCG 1 cut(s) 219
BsiEI CGRYCG 1 cut(s) 219
BsiHKCI CYCGRG 1 cut(s) 420
BsiSI CCGG 2 cut(s) 219, 421
BslI CCNNNNNNNGG 1 cut(s) 421
BsoBI CYCGRG 1 cut(s) 420
Bsp1407I TGTACA 1 cut(s) 178
BsrGI TGTACA 1 cut(s) 178
BssECI CCNNGG 3 cut(s) 35, 319, 420
BssT1I CCWWGG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 1 cut(s) 440
BstAUI TGTACA 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 114
BstDSI CCRYGG 1 cut(s) 319
BstF5I GGATG 1 cut(s) 139
BstHHI GCGC 1 cut(s) 395
BstMCI CGRYCG 1 cut(s) 219
BstMWI GCNNNNNNNGC 1 cut(s) 273
BstSCI CCNGG 2 cut(s) 419, 420
BstV1I GCAGC 1 cut(s) 103
BsuI GTATCC 1 cut(s) 55
BtgI CCRYGG 1 cut(s) 319
BtsCI GGATG 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 114
CfoI GCGC 1 cut(s) 395
Cfr9I CCCGGG 1 cut(s) 420
Csp6I GTAC 4 cut(s) 97, 179, 316, 417
CviJI RGCY 3 cut(s) 116, 237, 267
CviKI_1 RGCY 3 cut(s) 116, 237, 267
CviQI GTAC 4 cut(s) 97, 179, 316, 417
DraI TTTAAA 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 440
EarI CTCTTC 1 cut(s) 440
Eco130I CCWWGG 1 cut(s) 35
Eco88I CYCGRG 1 cut(s) 420
EcoT14I CCWWGG 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 35
FaiI YATR 6 cut(s) 28, 30, 69, 126, 300, 457
FauNDI CATATG 1 cut(s) 28
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 1 cut(s) 36
GlaI GCGC 1 cut(s) 394
GluI GCNGC 1 cut(s) 117
HapII CCGG 2 cut(s) 219, 421
HhaI GCGC 1 cut(s) 395
Hin6I GCGC 1 cut(s) 393
HinP1I GCGC 1 cut(s) 393
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HpaII CCGG 2 cut(s) 219, 421
Hpy166II GTNNAC 3 cut(s) 75, 160, 179
Hpy188III TCNNGA 2 cut(s) 82, 357
Hpy8I GTNNAC 3 cut(s) 75, 160, 179
HpyAV CCTTC 1 cut(s) 227
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4V TGCA 2 cut(s) 20, 112
HpyF10VI GCNNNNNNNGC 1 cut(s) 273
HspAI GCGC 1 cut(s) 393
LpnPI CCDG 5 cut(s) 98, 158, 232, 342, 434
Lsp1109I GCAGC 1 cut(s) 103
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 188
MboII GAAGA 2 cut(s) 427, 430
MluCI AATT 3 cut(s) 352, 366, 385
MmeI TCCRAC 1 cut(s) 322
MnlI CCTC 5 cut(s) 102, 124, 255, 338, 459
MroXI GAANNNNTTC 1 cut(s) 282
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 2 cut(s) 105, 291
MspI CCGG 2 cut(s) 219, 421
MspR9I CCNGG 2 cut(s) 421, 422
MwoI GCNNNNNNNGC 1 cut(s) 273
NciI CCSGG 2 cut(s) 421, 422
NdeI CATATG 1 cut(s) 28
OliI CACNNNNGTG 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 282
PkrI GCNGC 1 cut(s) 118
RsaI GTAC 4 cut(s) 98, 180, 317, 418
RsaNI GTAC 4 cut(s) 97, 179, 316, 417
RseI CAYNNNNRTG 2 cut(s) 105, 291
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 1 cut(s) 117
ScrFI CCNGG 2 cut(s) 421, 422
SetI ASST 2 cut(s) 269, 349
SmaI CCCGGG 1 cut(s) 422
SmiMI CAYNNNNRTG 2 cut(s) 105, 291
Sse9I AATT 3 cut(s) 352, 366, 385
SspI AATATT 1 cut(s) 429
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 2 cut(s) 419, 420
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 1 cut(s) 320
TasI AATT 3 cut(s) 352, 366, 385
TatI WGTACW 1 cut(s) 178
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 275
TspGWI ACGGA 1 cut(s) 404
TspMI CCCGGG 1 cut(s) 420
XapI RAATTY 2 cut(s) 352, 385
XmaI CCCGGG 1 cut(s) 420
XmaJI CCTAGG 1 cut(s) 35
XmnI GAANNNNTTC 1 cut(s) 282
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.