Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023161.1

Orthogroup ID

OG0005259

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1277

Gene Structure 1277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023161.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atggaggaagtagaggtagtcatagtaggtgcaggtcctgctggtctagcaacctctgcatgtcttaaccgcctcaatatctcaaatgtcgtactcgaaagagaagattgctatgcttctctttggaagaataagacatacgatcgtttgaagcttcacttagcaaagcaattctgtgaactaccgtatatgcctttccctaaaaatgcacccacatatgttcctaggaaagagtttattcaatacttggatacttatgtgtccactttcaagataaaccctctgtaccacagaagtgtgaaggctgctttttatgatgaggatgtggaaaaatggagtgtccttgtcaacaacacaaaacaaggtgtacaagaaagttactacgggaaatctcttgtggttgcgaccggagaaaatagtgaaggctattttcctcaaacaaaaggtttgggtagctttaaaggtgaaatcattcactcaagtgagtatggaaatggcgagaagtaccgtgggaaaactgttttagttgttggaggtggaaattccggaatggaaattgcctacgacttattaaatttcggcgcaaatacttctattgttgtccgtaccccgatacatgttgttaccaaggagatcgtgttcattggaatggttctgttaaagtaccttcctgttaaggttgtagatgccattgtcatgttcttaaccaagtggaaatttggaaatttatccaagtatgggattcaaattccaaaaatggggccattttatctcaaggaagccaaaggtcgatcccccatcatcgatgttgggaccatcgaaaagatcaagagtggagagatacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

282

Amino Acids

31.55

Weight (kDa)

8.96

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21430
fragaria_vesca	FvH4_2g14550 FvH4_2g15120
malus_domestica	MD10G1010000.v1.1 MD10G1010100.v1.1 MD10G1010200.v1.1 MD10G1010300.v1.1 MD15G1274600.v1.1
prunus_persica	Prupe.8G014100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0484941 RchiOBHm_Chr4g0439711
rosa_laevigata	RLG00000006243 RLG00000023184
rosa_multiflora	Rmu_sc0002724.1_g000045 Rmu_sc0023161.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380650 Rroxscaffold_6G00397340 Rroxscaffold_7G00191000
rosa_rugosa	Rorug03G0214400 Rorug04G0320900 Rorug06G0110500
rosa_samantha	Rh3AG264900 Rh3BG300400 Rh3DG294100 Rh4AG371900 Rh4BG383800 Rh4CG398500
rosa_wichuraiana	Rw3G023670 Rw4G031740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	23
AccIII	TCCGGA	1 cut(s)	545
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	1 cut(s)	786
AcsI	RAATTY	5 cut(s)	541, 574, 716, 724, 747
AfaI	GTAC	6 cut(s)	93, 287, 369, 506, 607, 665
AfiI	CCNNNNNNNGG	2 cut(s)	738, 758
AflIII	ACRYGT	1 cut(s)	616
AgsI	TTSAA	4 cut(s)	151, 242, 271, 746
AleI	CACNNNNGTG	2 cut(s)	294, 480
AloI	GAACNNNNNNTCC	2 cut(s)	623, 655
AluBI	AGCT	2 cut(s)	154, 456
AluI	AGCT	2 cut(s)	154, 456
AlwI	GGATC	1 cut(s)	786
AlwNI	CAGNNNCTG	1 cut(s)	38
Aor13HI	TCCGGA	1 cut(s)	545
AoxI	GGCC	1 cut(s)	761
ApeKI	GCWGC	1 cut(s)	305
ApoI	RAATTY	5 cut(s)	541, 574, 716, 724, 747
Asp700I	GAANNNNTTC	1 cut(s)	471
AspA2I	CCTAGG	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	584
AspS9I	GGNCC	3 cut(s)	35, 761, 813
AsuHPI	GGTGA	1 cut(s)	476
AvaII	GGWCC	2 cut(s)	35, 813
AvrII	CCTAGG	1 cut(s)	224
BaeI	ACNNNNGTAYC	2 cut(s)	243, 276
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	2 cut(s)	806, 824
BciVI	GTATCC	1 cut(s)	244
BfaI	CTAG	2 cut(s)	47, 225
BfuAI	ACCTGC	1 cut(s)	23
BfuI	GTATCC	1 cut(s)	244
BisI	GCNGC	1 cut(s)	306
BlnI	CCTAGG	1 cut(s)	224
BlsI	GCNGC	1 cut(s)	307
Bme18I	GGWCC	2 cut(s)	35, 813
BmgT120I	GGNCC	3 cut(s)	35, 761, 813
BmiI	GGNNCC	2 cut(s)	762, 814
BmsI	GCATC	1 cut(s)	676
BpuEI	CTTGAG	2 cut(s)	463, 758
Bsa29I	ATCGAT	1 cut(s)	804
BsaJI	CCNNGG	3 cut(s)	224, 508, 627
BsaWI	WCCGGW	2 cut(s)	407, 545
BsaXI	ACNNNNNCTCC	2 cut(s)	623, 653
Bsc4I	CCNNNNNNNGG	2 cut(s)	738, 758
BseAI	TCCGGA	1 cut(s)	545
BseCI	ATCGAT	1 cut(s)	804
BseDI	CCNNGG	3 cut(s)	224, 508, 627
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	2 cut(s)	738, 758
BseXI	GCAGC	1 cut(s)	292
BsgI	GTGCAG	1 cut(s)	51
Bsh1285I	CGRYCG	2 cut(s)	145, 408
BshFI	GGCC	1 cut(s)	763
BshVI	ATCGAT	1 cut(s)	804
BsiEI	CGRYCG	2 cut(s)	145, 408
BsiSI	CCGG	2 cut(s)	408, 546
BslFI	GGGAC	1 cut(s)	826
BslI	CCNNNNNNNGG	2 cut(s)	738, 758
BsmFI	GGGAC	1 cut(s)	826
BsnI	GGCC	1 cut(s)	763
Bsp13I	TCCGGA	1 cut(s)	545
Bsp1407I	TGTACA	1 cut(s)	367
Bsp143I	GATC	4 cut(s)	142, 633, 791, 825
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	1 cut(s)	763
BspDI	ATCGAT	1 cut(s)	804
BspEI	TCCGGA	1 cut(s)	545
BspLI	GGNNCC	2 cut(s)	762, 814
BspMI	ACCTGC	1 cut(s)	23
BspPI	GGATC	1 cut(s)	786
BsrGI	TGTACA	1 cut(s)	367
BssECI	CCNNGG	3 cut(s)	224, 508, 627
BssMI	GATC	4 cut(s)	142, 633, 791, 825
BssT1I	CCWWGG	2 cut(s)	224, 627
Bst4CI	ACNGT	3 cut(s)	186, 509, 520
BstAPI	GCANNNNNTGC	2 cut(s)	38, 56
BstAUI	TGTACA	1 cut(s)	367
BstDEI	CTNAG	1 cut(s)	160
BstDSI	CCRYGG	1 cut(s)	508
BstF5I	GGATG	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	584
BstKTI	GATC	4 cut(s)	145, 636, 794, 828
BstMBI	GATC	4 cut(s)	142, 633, 791, 825
BstMCI	CGRYCG	2 cut(s)	145, 408
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 47, 56
BstNSI	RCATGY	2 cut(s)	63, 620
BstV1I	GCAGC	1 cut(s)	292
Bsu15I	ATCGAT	1 cut(s)	804
BsuI	GTATCC	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	763
BsuTUI	ATCGAT	1 cut(s)	804
BtgI	CCRYGG	1 cut(s)	508
BtsCI	GGATG	1 cut(s)	328
BveI	ACCTGC	1 cut(s)	23
CaiI	CAGNNNCTG	1 cut(s)	38
CfoI	GCGC	1 cut(s)	584
Cfr13I	GGNCC	3 cut(s)	35, 761, 813
ClaI	ATCGAT	1 cut(s)	804
Csp6I	GTAC	6 cut(s)	92, 286, 368, 505, 606, 664
CviAII	CATG	3 cut(s)	60, 617, 697
CviJI	RGCY	6 cut(s)	154, 305, 426, 456, 763, 782
CviKI_1	RGCY	6 cut(s)	154, 305, 426, 456, 763, 782
CviQI	GTAC	6 cut(s)	92, 286, 368, 505, 606, 664
DdeI	CTNAG	1 cut(s)	160
DpnI	GATC	4 cut(s)	144, 635, 793, 827
DpnII	GATC	4 cut(s)	142, 633, 791, 825
DraI	TTTAAA	1 cut(s)	460
Eco130I	CCWWGG	2 cut(s)	224, 627
Eco47I	GGWCC	2 cut(s)	35, 813
EcoO109I	RGGNCCY	1 cut(s)	35
EcoT14I	CCWWGG	2 cut(s)	224, 627
ErhI	CCWWGG	2 cut(s)	224, 627
FaeI	CATG	3 cut(s)	63, 620, 700
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FaqI	GGGAC	1 cut(s)	826
FatI	CATG	3 cut(s)	59, 616, 696
FauNDI	CATATG	1 cut(s)	217
Fnu4HI	GCNGC	1 cut(s)	306
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	1 cut(s)	306
FspBI	CTAG	2 cut(s)	47, 225
GlaI	GCGC	1 cut(s)	583
GluI	GCNGC	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	763
HapII	CCGG	2 cut(s)	408, 546
HhaI	GCGC	1 cut(s)	584
Hin1II	CATG	3 cut(s)	63, 620, 700
Hin6I	GCGC	1 cut(s)	582
HinP1I	GCGC	1 cut(s)	582
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	1 cut(s)	742
HpaII	CCGG	2 cut(s)	408, 546
HphI	GGTGA	1 cut(s)	476
Hpy166II	GTNNAC	4 cut(s)	179, 264, 349, 368
Hpy188III	TCNNGA	3 cut(s)	271, 546, 829
Hpy8I	GTNNAC	4 cut(s)	179, 264, 349, 368
HpyAV	CCTTC	3 cut(s)	295, 416, 677
HpyCH4III	ACNGT	3 cut(s)	186, 509, 520
HpyCH4V	TGCA	3 cut(s)	32, 59, 209
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 47, 56
HpyF3I	CTNAG	1 cut(s)	160
Hsp92II	CATG	3 cut(s)	63, 620, 700
HspAI	GCGC	1 cut(s)	582
Kpn2I	TCCGGA	1 cut(s)	545
Kzo9I	GATC	4 cut(s)	142, 633, 791, 825
LpnPI	CCDG	6 cut(s)	18, 27, 51, 421, 559, 684
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	1 cut(s)	676
MaeI	CTAG	2 cut(s)	47, 225
MaeIII	GTNAC	2 cut(s)	377, 622
MalI	GATC	4 cut(s)	144, 635, 793, 827
MboI	GATC	4 cut(s)	142, 633, 791, 825
MboII	GAAGA	2 cut(s)	116, 139
MluCI	AATT	7 cut(s)	170, 541, 555, 574, 716, 724, 747
MmeI	TCCRAC	1 cut(s)	511
MnlI	CCTC	7 cut(s)	7, 64, 83, 291, 313, 444, 527
MroI	TCCGGA	1 cut(s)	545
MroXI	GAANNNNTTC	1 cut(s)	471
MseI	TTAA	6 cut(s)	66, 459, 572, 659, 675, 704
MslI	CAYNNNNRTG	4 cut(s)	294, 480, 647, 695
MspI	CCGG	2 cut(s)	408, 546
MwoI	GCNNNNNNNGC	3 cut(s)	38, 47, 56
NdeI	CATATG	1 cut(s)	217
NdeII	GATC	4 cut(s)	142, 633, 791, 825
NlaIII	CATG	3 cut(s)	63, 620, 700
NlaIV	GGNNCC	2 cut(s)	762, 814
NspI	RCATGY	2 cut(s)	63, 620
OliI	CACNNNNGTG	2 cut(s)	294, 480
PciI	ACATGT	1 cut(s)	616
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	1 cut(s)	742
PkrI	GCNGC	1 cut(s)	307
Ple19I	CGATCG	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	35
PscI	ACATGT	1 cut(s)	616
Psp5II	RGGWCCY	1 cut(s)	35
PspN4I	GGNNCC	2 cut(s)	762, 814
PspPI	GGNCC	3 cut(s)	35, 761, 813
PspPPI	RGGWCCY	1 cut(s)	35
PstNI	CAGNNNCTG	1 cut(s)	38
PvuI	CGATCG	1 cut(s)	145
RsaI	GTAC	6 cut(s)	93, 287, 369, 506, 607, 665
RsaNI	GTAC	6 cut(s)	92, 286, 368, 505, 606, 664
RseI	CAYNNNNRTG	4 cut(s)	294, 480, 647, 695
SaqAI	TTAA	6 cut(s)	66, 459, 572, 659, 675, 704
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	4 cut(s)	142, 633, 791, 825
Sau96I	GGNCC	3 cut(s)	35, 761, 813
SfaNI	GCATC	1 cut(s)	676
SinI	GGWCC	2 cut(s)	35, 813
SmiMI	CAYNNNNRTG	4 cut(s)	294, 480, 647, 695
SmlI	CTYRAG	2 cut(s)	478, 773
SmoI	CTYRAG	2 cut(s)	478, 773
Sse9I	AATT	7 cut(s)	170, 541, 555, 574, 716, 724, 747
SsiI	CCGC	1 cut(s)	70
SspMI	CTAG	2 cut(s)	47, 225
StyI	CCWWGG	2 cut(s)	224, 627
TaaI	ACNGT	3 cut(s)	186, 509, 520
TaqI	TCGA	4 cut(s)	96, 790, 804, 819
TasI	AATT	7 cut(s)	170, 541, 555, 574, 716, 724, 747
TatI	WGTACW	1 cut(s)	367
TfiI	GAWTC	1 cut(s)	742
Tru1I	TTAA	6 cut(s)	66, 459, 572, 659, 675, 704
Tru9I	TTAA	6 cut(s)	66, 459, 572, 659, 675, 704
TseI	GCWGC	1 cut(s)	305
TspDTI	ATGAA	1 cut(s)	631
TspGWI	ACGGA	1 cut(s)	593
VpaK11BI	GGWCC	2 cut(s)	35, 813
XapI	RAATTY	5 cut(s)	541, 574, 716, 724, 747
XceI	RCATGY	2 cut(s)	63, 620
XmaJI	CCTAGG	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	2 cut(s)	47, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.