Rh3BG300400

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0005259
Physical Location & Seq
Reverse (-)
30164163 .. 30165838
1676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG300400.1

Sequence Viewer

Length: 1155 bp
ATGGAGGAAGTAGAGGTAGTCATAGTAGGTGCAGGTCCTGCTGGTCTAGCAACCTCTGCATGTCTTAACCGCCTCAATATCTCAAATGTCATACTCGAAAGAGAAGATTGCTATGCTTCTCTTTGGAAGAATAGGACATATGATCGTTTGAAGCTTCACTTAGCAAAGCAATTTTGTCAACTACCCTATATGCCCTTTCCTAAAAACGCACCCACATATATTCCTAGGAGAGAGTTTATTCAATACCTACATACTTACGTATCCACCTTCAACATAAACCCTATGTACCACAGAAGTGTGGAGACTGCTTTTTACAATGAGAATGTAGAAAAATGGTATGTCGTTGTCAACAACACACGACTAGGTGTAAAAGAAACATATTATGGGAAGTTTCTTGTGGTAGCAAGTGGTGAGAATGGTGAAGGTTATGTTCCTGAAACAAAAGGTTTGGATACCTTTAACGGCGAATACATTCATTCGAGCAAGTATGAAAGTGGCATGAAGTACCGTGGGAAAGATGTTTTGGTTGTCGGATCAGGAAATTCGGGAATGGAAATTGCCTATGACTTATCTAATTACGGCGCAAATACTTCCATTGTTGTTCGTAGCCCGGTACATGTTCTTACCAAAGAAATTGTGTTCCTTGGAATGGTTTTATCCAAATATCTTCCGGTTAAAGTTATCGATGGCATTGCCCTGATCTTAGGGAAATTGAAATTTGGAAATTTATCGAAGTATGGAATTCATAAACCAACAAAAGGGCCATTTTATCTCAAGGAACACGAGGGTCAAGCCCCCATCATCGATGTTGGGACCATTGAAAAGATCAAGAGTGACGAAATCAAGGTTTTGCCATCCATAACAAGCATAGAAGGAAATGAAATCCGATTTGAGAATGGCTACCTTAAAAGTTATGATGCTATAATATTTGCTACAGGCTATAAAAGCACTGTGCTAAAGTGGCTCAAGGATGACAATTATTTCTTTAATGACAAAGGAATGCCGAATAAAAGTTTTCCGAACCACTGGAAGTCGGAAAATGGTCTTTACTGTGCTGGTTTCTCAAGGCGTGGACTATTTGGAATTTCACATGATGCACTGAAAATAACAAATGATATCAATTTCTCTCTTGGTCGGAACAAAAAGGGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

384

Amino Acids

43.36

Weight (kDa)

8.98

Isoelectric Point (pI)

33.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 3 - 36 9.3e-06 FAD binding domain
FMO-like PF00743 5 - 315 2.7e-20 Flavin-binding monooxygenase-like
Pyr_redox_2 PF07992 5 - 204 8.4e-13 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3 PF13738 7 - 204 5e-23 Pyridine nucleotide-disulphide oxidoreductase
Lys_Orn_oxgnase PF13434 68 - 199 2.4e-13 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 23
AciI CCGC 1 cut(s) 70
AclWI GGATC 1 cut(s) 541
AcsI RAATTY 5 cut(s) 541, 716, 724, 741, 1083
AfaI GTAC 3 cut(s) 287, 506, 615
AfiI CCNNNNNNNGG 2 cut(s) 649, 758
AflIII ACRYGT 1 cut(s) 616
AgsI TTSAA 5 cut(s) 151, 242, 271, 715, 821
AjuI GAANNNNNNNTTGG 2 cut(s) 506, 538
AleI CACNNNNGTG 1 cut(s) 294
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 296
AlwI GGATC 1 cut(s) 541
AlwNI CAGNNNCTG 1 cut(s) 38
AoxI GGCC 1 cut(s) 761
ApoI RAATTY 5 cut(s) 541, 716, 724, 741, 1083
Asp700I GAANNNNTTC 1 cut(s) 471
AspA2I CCTAGG 1 cut(s) 224
AspLEI GCGC 1 cut(s) 584
AspS9I GGNCC 3 cut(s) 35, 761, 813
AsuC2I CCSGG 1 cut(s) 611
AsuHPI GGTGA 2 cut(s) 422, 431
AvaII GGWCC 2 cut(s) 35, 813
AvrII CCTAGG 1 cut(s) 224
BaeI ACNNNNGTAYC 2 cut(s) 243, 276
BauI CACGAG 1 cut(s) 782
BccI CCATC 3 cut(s) 680, 806, 862
BceAI ACGGC 2 cut(s) 478, 595
BcgI CGANNNNNNTGC 2 cut(s) 674, 708
BciVI GTATCC 2 cut(s) 271, 445
BcnI CCSGG 1 cut(s) 611
BcoDI GTCTC 1 cut(s) 296
BfaI CTAG 3 cut(s) 47, 225, 362
BfmI CTRYAG 1 cut(s) 933
BfuAI ACCTGC 1 cut(s) 23
BfuI GTATCC 2 cut(s) 271, 445
BlnI CCTAGG 1 cut(s) 224
Bme1390I CCNGG 1 cut(s) 611
Bme18I GGWCC 2 cut(s) 35, 813
BmgT120I GGNCC 3 cut(s) 35, 761, 813
BmiI GGNNCC 1 cut(s) 814
BmrFI CCNGG 1 cut(s) 611
BmsI GCATC 2 cut(s) 907, 1084
BpuEI CTTGAG 3 cut(s) 758, 950, 1048
BpuMI CCSGG 1 cut(s) 611
Bsa29I ATCGAT 2 cut(s) 684, 804
BsaAI YACGTR 1 cut(s) 259
BsaJI CCNNGG 3 cut(s) 224, 508, 643
BsaWI WCCGGW 1 cut(s) 670
Bsc4I CCNNNNNNNGG 2 cut(s) 649, 758
Bse1I ACTGG 1 cut(s) 1031
Bse3DI GCAATG 1 cut(s) 690
BseCI ATCGAT 2 cut(s) 684, 804
BseDI CCNNGG 3 cut(s) 224, 508, 643
BseGI GGATG 2 cut(s) 854, 976
BseLI CCNNNNNNNGG 2 cut(s) 649, 758
BseMI GCAATG 1 cut(s) 690
BseNI ACTGG 1 cut(s) 1031
BsgI GTGCAG 1 cut(s) 51
BshFI GGCC 1 cut(s) 763
BshVI ATCGAT 2 cut(s) 684, 804
BsiSI CCGG 2 cut(s) 611, 671
BslFI GGGAC 1 cut(s) 826
BslI CCNNNNNNNGG 2 cut(s) 649, 758
BsmAI GTCTC 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 826
BsmI GAATGC 1 cut(s) 1005
BsnI GGCC 1 cut(s) 763
Bsp143I GATC 4 cut(s) 142, 533, 699, 825
BspACI CCGC 1 cut(s) 70
BspANI GGCC 1 cut(s) 763
BspDI ATCGAT 2 cut(s) 684, 804
BspLI GGNNCC 1 cut(s) 814
BspMI ACCTGC 1 cut(s) 23
BspPI GGATC 1 cut(s) 541
BsrDI GCAATG 1 cut(s) 690
BsrI ACTGG 1 cut(s) 1031
BssECI CCNNGG 3 cut(s) 224, 508, 643
BssMI GATC 4 cut(s) 142, 533, 699, 825
BssSI CACGAG 1 cut(s) 782
BssT1I CCWWGG 2 cut(s) 224, 643
Bst2BI CACGAG 1 cut(s) 782
Bst4CI ACNGT 3 cut(s) 509, 952, 1052
BstAPI GCANNNNNTGC 2 cut(s) 38, 56
BstBAI YACGTR 1 cut(s) 259
BstDEI CTNAG 2 cut(s) 160, 703
BstDSI CCRYGG 1 cut(s) 508
BstF5I GGATG 2 cut(s) 854, 976
BstHHI GCGC 1 cut(s) 584
BstKTI GATC 4 cut(s) 145, 536, 702, 828
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 4 cut(s) 142, 533, 699, 825
BstMWI GCNNNNNNNGC 5 cut(s) 38, 47, 56, 945, 961
BstNSI RCATGY 2 cut(s) 63, 620
BstSCI CCNGG 1 cut(s) 609
BstSFI CTRYAG 1 cut(s) 933
BstSNI TACGTA 1 cut(s) 259
Bsu15I ATCGAT 2 cut(s) 684, 804
BsuI GTATCC 2 cut(s) 271, 445
BsuRI GGCC 1 cut(s) 763
BsuTUI ATCGAT 2 cut(s) 684, 804
BtgI CCRYGG 1 cut(s) 508
BtsCI GGATG 2 cut(s) 854, 976
BtsIMutI CAGTG 3 cut(s) 948, 1024, 1097
BveI ACCTGC 1 cut(s) 23
CaiI CAGNNNCTG 1 cut(s) 38
CfoI GCGC 1 cut(s) 584
Cfr13I GGNCC 3 cut(s) 35, 761, 813
ClaI ATCGAT 2 cut(s) 684, 804
Csp6I GTAC 3 cut(s) 286, 505, 614
CviAII CATG 4 cut(s) 60, 499, 617, 1091
CviJI RGCY 7 cut(s) 154, 609, 763, 794, 900, 939, 964
CviKI_1 RGCY 7 cut(s) 154, 609, 763, 794, 900, 939, 964
CviQI GTAC 3 cut(s) 286, 505, 614
DdeI CTNAG 2 cut(s) 160, 703
DpnI GATC 4 cut(s) 144, 535, 701, 827
DpnII GATC 4 cut(s) 142, 533, 699, 825
Eco105I TACGTA 1 cut(s) 259
Eco130I CCWWGG 2 cut(s) 224, 643
Eco32I GATATC 1 cut(s) 1117
Eco47I GGWCC 2 cut(s) 35, 813
EcoO109I RGGNCCY 1 cut(s) 35
EcoRI GAATTC 1 cut(s) 741
EcoRV GATATC 1 cut(s) 1117
EcoT14I CCWWGG 2 cut(s) 224, 643
ErhI CCWWGG 2 cut(s) 224, 643
FaeI CATG 4 cut(s) 63, 502, 620, 1094
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FaqI GGGAC 1 cut(s) 826
FatI CATG 4 cut(s) 59, 498, 616, 1090
FauNDI CATATG 1 cut(s) 139
FokI GGATG 2 cut(s) 841, 983
FspBI CTAG 3 cut(s) 47, 225, 362
GlaI GCGC 1 cut(s) 583
HaeIII GGCC 1 cut(s) 763
HapII CCGG 2 cut(s) 611, 671
HhaI GCGC 1 cut(s) 584
Hin1II CATG 4 cut(s) 63, 502, 620, 1094
Hin6I GCGC 1 cut(s) 582
HinP1I GCGC 1 cut(s) 582
HincII GTYRAC 2 cut(s) 179, 349
HindII GTYRAC 2 cut(s) 179, 349
HindIII AAGCTT 1 cut(s) 152
HpaII CCGG 2 cut(s) 611, 671
HphI GGTGA 2 cut(s) 422, 431
Hpy166II GTNNAC 3 cut(s) 179, 349, 1073
Hpy188I TCNGA 5 cut(s) 533, 887, 1020, 1036, 1137
Hpy188III TCNNGA 4 cut(s) 434, 537, 546, 829
Hpy8I GTNNAC 3 cut(s) 179, 349, 1073
HpyAV CCTTC 3 cut(s) 277, 416, 866
HpyCH4III ACNGT 3 cut(s) 509, 952, 1052
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 3 cut(s) 32, 59, 1097
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 47, 56, 945, 961
HpyF3I CTNAG 2 cut(s) 160, 703
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 4 cut(s) 63, 502, 620, 1094
HspAI GCGC 1 cut(s) 582
Kzo9I GATC 4 cut(s) 142, 533, 699, 825
LweI GCATC 2 cut(s) 907, 1084
MaeI CTAG 3 cut(s) 47, 225, 362
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 833
MalI GATC 4 cut(s) 144, 535, 701, 827
MboI GATC 4 cut(s) 142, 533, 699, 825
MboII GAAGA 3 cut(s) 116, 139, 659
MmeI TCCRAC 3 cut(s) 511, 1014, 1115
MnlI CCTC 4 cut(s) 7, 64, 83, 778
MroXI GAANNNNTTC 1 cut(s) 471
MseI TTAA 5 cut(s) 66, 459, 675, 906, 987
MslI CAYNNNNRTG 1 cut(s) 294
MspI CCGG 2 cut(s) 611, 671
MspR9I CCNGG 1 cut(s) 611
Mva1269I GAATGC 1 cut(s) 1005
MwoI GCNNNNNNNGC 5 cut(s) 38, 47, 56, 945, 961
NciI CCSGG 1 cut(s) 611
NdeI CATATG 1 cut(s) 139
NdeII GATC 4 cut(s) 142, 533, 699, 825
NlaIII CATG 4 cut(s) 63, 502, 620, 1094
NlaIV GGNNCC 1 cut(s) 814
NmuCI GTSAC 1 cut(s) 833
NspI RCATGY 2 cut(s) 63, 620
OliI CACNNNNGTG 1 cut(s) 294
PciI ACATGT 1 cut(s) 616
PctI GAATGC 1 cut(s) 1005
PdmI GAANNNNTTC 1 cut(s) 471
Ppu21I YACGTR 1 cut(s) 259
PpuMI RGGWCCY 1 cut(s) 35
PscI ACATGT 1 cut(s) 616
Psp5II RGGWCCY 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 814
PspPI GGNCC 3 cut(s) 35, 761, 813
PspPPI RGGWCCY 1 cut(s) 35
PstNI CAGNNNCTG 1 cut(s) 38
RsaI GTAC 3 cut(s) 287, 506, 615
RsaNI GTAC 3 cut(s) 286, 505, 614
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 5 cut(s) 66, 459, 675, 906, 987
Sau3AI GATC 4 cut(s) 142, 533, 699, 825
Sau96I GGNCC 3 cut(s) 35, 761, 813
ScrFI CCNGG 1 cut(s) 611
SfaNI GCATC 2 cut(s) 907, 1084
SfcI CTRYAG 1 cut(s) 933
SinI GGWCC 2 cut(s) 35, 813
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 3 cut(s) 773, 965, 1063
SmoI CTYRAG 3 cut(s) 773, 965, 1063
SnaBI TACGTA 1 cut(s) 259
SsiI CCGC 1 cut(s) 70
SspI AATATT 1 cut(s) 927
SspMI CTAG 3 cut(s) 47, 225, 362
StyD4I CCNGG 1 cut(s) 609
StyI CCWWGG 2 cut(s) 224, 643
TaaI ACNGT 3 cut(s) 509, 952, 1052
TaiI ACGT 1 cut(s) 261
TaqI TCGA 5 cut(s) 96, 479, 684, 731, 804
Tru1I TTAA 5 cut(s) 66, 459, 675, 906, 987
Tru9I TTAA 5 cut(s) 66, 459, 675, 906, 987
TscAI CASTG 3 cut(s) 955, 1031, 1104
TseFI GTSAC 1 cut(s) 833
Tsp45I GTSAC 1 cut(s) 833
TspDTI ATGAA 5 cut(s) 464, 504, 515, 734, 894
TspRI CASTG 3 cut(s) 955, 1031, 1104
VpaK11BI GGWCC 2 cut(s) 35, 813
XapI RAATTY 5 cut(s) 541, 716, 724, 741, 1083
XceI RCATGY 2 cut(s) 63, 620
XmaJI CCTAGG 1 cut(s) 224
XmnI GAANNNNTTC 1 cut(s) 471
XspI CTAG 3 cut(s) 47, 225, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.