RchiOBHm_Chr4g0439711

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0005259
Physical Location & Seq
Reverse (-)
62095531 .. 62097310
1780 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40775

Sequence Viewer

Length: 1134 bp
ATGGAGGAAGTAGAGGTAGTCATAGTAGGTGCAGGTCCTGCTGGTCTAGCAACCTCTGCATGTCTTAACCGCCTCAATATCTCAAATGTCGTACTCGAAAGAGAAGATTGCTATGCTTCTCTTTGGAAGAATAGGACATACGATCGTTTGAAGCTTCACTTAGCAAAGCAATTCTGTGAACTACCGTATATGCCTTTCCCTAAAAATGCACCCACATATGTTCCTAGGAAAGAGTTTATTCAATACTTGGATACTTATGTGTCCACTTTCAAGATAAACCCTCTGTACCACAGAAGTGTGAAGGCTGCTTTTTATGATGAGGATGTGGAAAAATGGAGTGTCCTTGTCAACAACACAAAACAAGGTGTACAAGAAAGTTACTACGGGAAATCTCTTGTGGTTGCGACCGGAGAAAATAGTGAAGGCTATTTTCCTCAAACAAAAGGTTTGGGTAGCTTTAAAGGTGAAATCATTCATTCAAGTGAGTATGGAAATGGCAAGAAGTACCGTGGGAAAAATGTTTTAGTTGTTGGAGGTGGAAATTCTGGAATGGAAATTGCCTACGACTTATTAAATTTTAGCGCAAATGTTTCTATTGTTGTCCGTACCCCGATCGTGTTCATTGGAATGGTTCTGTTAAAGTACCTTCCTGTTAAGGTTGTAGATGCCATTGTCATGTTCTTAATCAAATGGAAATTTGGAAATTTATCCAAGTATGGGGTTCAAATTCCAAAAATGGGGCCATTTTATCTCAAGGAAGCCAAAGGTCGATCCCCCATCATCGATGTTGGGACCATCGAAAAGATCAAGAGTGGAGAGATACAGGTTTTGCCATCCATAACAAGCATAGAAGGAAATGAAATCCGGTTTGAGAATGGCTACCTGAAATGTTACGATGCTATAGTATTTGCTACAGGCTATAAAAGCACTGTGCTAAAGTGGCTTAAGGGCGAAAACAACCTCTTTAATGATAATGGAATGCCGAAGAAAAGTTTCCCTAACCACTGGAAGTCACAAAATGGCCTTTACTGTGTTGGATTCTCAAGACGTGGATTATTTGGCATTTCACAGGATGCACAAAATATAACAAATGATATAAATTCCTCTCTCAATGAGAGCAAAAGAAGGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko00380 ko01100 map00380 map01100
Pfam Domains
Protein Families
FMO-like K_oxygenase Pyr_redox_3

Protein Analysis

377

Amino Acids

42.36

Weight (kDa)

9.23

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 3 - 36 9.1e-06 FAD binding domain
FMO-like PF00743 5 - 309 2.7e-21 Flavin-binding monooxygenase-like
Pyr_redox_2 PF07992 5 - 207 3.3e-16 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3 PF13738 7 - 203 1.1e-22 Pyridine nucleotide-disulphide oxidoreductase
Lys_Orn_oxgnase PF13434 68 - 199 1.8e-14 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 23
AciI CCGC 1 cut(s) 70
AclWI GGATC 1 cut(s) 765
AcsI RAATTY 6 cut(s) 541, 574, 695, 703, 726, 1099
AfaI GTAC 6 cut(s) 93, 287, 369, 506, 607, 644
AfiI CCNNNNNNNGG 2 cut(s) 717, 737
AflII CTTAAG 1 cut(s) 944
AgsI TTSAA 5 cut(s) 151, 242, 271, 480, 725
AjiI CACGTC 1 cut(s) 1049
AleI CACNNNNGTG 1 cut(s) 294
AluBI AGCT 2 cut(s) 154, 456
AluI AGCT 2 cut(s) 154, 456
AlwI GGATC 1 cut(s) 765
AlwNI CAGNNNCTG 1 cut(s) 38
AoxI GGCC 2 cut(s) 740, 1021
ApeKI GCWGC 1 cut(s) 305
ApoI RAATTY 6 cut(s) 541, 574, 695, 703, 726, 1099
Asp700I GAANNNNTTC 2 cut(s) 471, 992
AspA2I CCTAGG 1 cut(s) 224
AspLEI GCGC 1 cut(s) 584
AspS9I GGNCC 3 cut(s) 35, 740, 792
AsuHPI GGTGA 1 cut(s) 476
AvaII GGWCC 2 cut(s) 35, 792
AvrII CCTAGG 1 cut(s) 224
BaeI ACNNNNGTAYC 2 cut(s) 243, 276
BbvI GCAGC 1 cut(s) 292
BccI CCATC 3 cut(s) 785, 803, 841
BciVI GTATCC 1 cut(s) 244
BfaI CTAG 2 cut(s) 47, 225
BfmI CTRYAG 2 cut(s) 900, 912
BfrI CTTAAG 1 cut(s) 944
BfuAI ACCTGC 1 cut(s) 23
BfuI GTATCC 1 cut(s) 244
BisI GCNGC 1 cut(s) 306
BlnI CCTAGG 1 cut(s) 224
BlsI GCNGC 1 cut(s) 307
Bme18I GGWCC 2 cut(s) 35, 792
BmgBI CACGTC 1 cut(s) 1049
BmgT120I GGNCC 3 cut(s) 35, 740, 792
BmiI GGNNCC 2 cut(s) 741, 793
BmsI GCATC 3 cut(s) 655, 886, 1063
BpuEI CTTGAG 2 cut(s) 737, 1027
Bsa29I ATCGAT 1 cut(s) 783
BsaJI CCNNGG 2 cut(s) 224, 508
BsaWI WCCGGW 2 cut(s) 407, 864
Bsc4I CCNNNNNNNGG 2 cut(s) 717, 737
Bse1I ACTGG 1 cut(s) 1010
BseCI ATCGAT 1 cut(s) 783
BseDI CCNNGG 2 cut(s) 224, 508
BseGI GGATG 3 cut(s) 328, 833, 1078
BseLI CCNNNNNNNGG 2 cut(s) 717, 737
BseNI ACTGG 1 cut(s) 1010
BseXI GCAGC 1 cut(s) 292
BsgI GTGCAG 1 cut(s) 51
Bsh1285I CGRYCG 3 cut(s) 145, 408, 615
BshFI GGCC 2 cut(s) 742, 1023
BshVI ATCGAT 1 cut(s) 783
BsiEI CGRYCG 3 cut(s) 145, 408, 615
BsiSI CCGG 2 cut(s) 408, 865
BslFI GGGAC 1 cut(s) 805
BslI CCNNNNNNNGG 2 cut(s) 717, 737
BsmFI GGGAC 1 cut(s) 805
BsmI GAATGC 1 cut(s) 984
BsnI GGCC 2 cut(s) 742, 1023
Bsp1407I TGTACA 1 cut(s) 367
Bsp143I GATC 4 cut(s) 142, 612, 770, 804
BspACI CCGC 1 cut(s) 70
BspANI GGCC 2 cut(s) 742, 1023
BspDI ATCGAT 1 cut(s) 783
BspLI GGNNCC 2 cut(s) 741, 793
BspMI ACCTGC 1 cut(s) 23
BspPI GGATC 1 cut(s) 765
BspTI CTTAAG 1 cut(s) 944
BsrGI TGTACA 1 cut(s) 367
BsrI ACTGG 1 cut(s) 1010
BssECI CCNNGG 2 cut(s) 224, 508
BssMI GATC 4 cut(s) 142, 612, 770, 804
BssT1I CCWWGG 1 cut(s) 224
Bst4CI ACNGT 4 cut(s) 186, 509, 931, 1031
BstAFI CTTAAG 1 cut(s) 944
BstAPI GCANNNNNTGC 2 cut(s) 38, 56
BstAUI TGTACA 1 cut(s) 367
BstDEI CTNAG 1 cut(s) 160
BstDSI CCRYGG 1 cut(s) 508
BstF5I GGATG 3 cut(s) 328, 833, 1078
BstHHI GCGC 1 cut(s) 584
BstKTI GATC 4 cut(s) 145, 615, 773, 807
BstMBI GATC 4 cut(s) 142, 612, 770, 804
BstMCI CGRYCG 3 cut(s) 145, 408, 615
BstMWI GCNNNNNNNGC 5 cut(s) 38, 47, 56, 924, 940
BstNSI RCATGY 1 cut(s) 63
BstSFI CTRYAG 2 cut(s) 900, 912
BstV1I GCAGC 1 cut(s) 292
Bsu15I ATCGAT 1 cut(s) 783
BsuI GTATCC 1 cut(s) 244
BsuRI GGCC 2 cut(s) 742, 1023
BsuTUI ATCGAT 1 cut(s) 783
BtgI CCRYGG 1 cut(s) 508
BtrI CACGTC 1 cut(s) 1049
BtsCI GGATG 3 cut(s) 328, 833, 1078
BtsIMutI CAGTG 2 cut(s) 927, 1003
BveI ACCTGC 1 cut(s) 23
CaiI CAGNNNCTG 1 cut(s) 38
CfoI GCGC 1 cut(s) 584
Cfr13I GGNCC 3 cut(s) 35, 740, 792
ClaI ATCGAT 1 cut(s) 783
Csp6I GTAC 6 cut(s) 92, 286, 368, 505, 606, 643
CviAII CATG 2 cut(s) 60, 676
CviQI GTAC 6 cut(s) 92, 286, 368, 505, 606, 643
DdeI CTNAG 1 cut(s) 160
DpnI GATC 4 cut(s) 144, 614, 772, 806
DpnII GATC 4 cut(s) 142, 612, 770, 804
DraI TTTAAA 1 cut(s) 460
Eco130I CCWWGG 1 cut(s) 224
Eco47I GGWCC 2 cut(s) 35, 792
EcoO109I RGGNCCY 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 224
FaeI CATG 2 cut(s) 63, 679
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FaqI GGGAC 1 cut(s) 805
FatI CATG 2 cut(s) 59, 675
FauNDI CATATG 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 306
FokI GGATG 3 cut(s) 335, 820, 1085
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 2 cut(s) 47, 225
GlaI GCGC 1 cut(s) 583
GluI GCNGC 1 cut(s) 306
HaeIII GGCC 2 cut(s) 742, 1023
HapII CCGG 2 cut(s) 408, 865
HhaI GCGC 1 cut(s) 584
Hin1II CATG 2 cut(s) 63, 679
Hin6I GCGC 1 cut(s) 582
HinP1I GCGC 1 cut(s) 582
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 1 cut(s) 1038
HpaII CCGG 2 cut(s) 408, 865
HphI GGTGA 1 cut(s) 476
Hpy166II GTNNAC 4 cut(s) 179, 264, 349, 368
Hpy188III TCNNGA 4 cut(s) 271, 546, 808, 1044
Hpy8I GTNNAC 4 cut(s) 179, 264, 349, 368
HpyAV CCTTC 5 cut(s) 295, 416, 656, 845, 1119
HpyCH4III ACNGT 4 cut(s) 186, 509, 931, 1031
HpyCH4IV ACGT 1 cut(s) 1048
HpyCH4V TGCA 4 cut(s) 32, 59, 209, 1076
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 47, 56, 924, 940
HpyF3I CTNAG 1 cut(s) 160
HpySE526I ACGT 1 cut(s) 1048
Hsp92II CATG 2 cut(s) 63, 679
HspAI GCGC 1 cut(s) 582
Kzo9I GATC 4 cut(s) 142, 612, 770, 804
Lsp1109I GCAGC 1 cut(s) 292
LweI GCATC 3 cut(s) 655, 886, 1063
MaeI CTAG 2 cut(s) 47, 225
MaeII ACGT 1 cut(s) 1048
MaeIII GTNAC 3 cut(s) 377, 890, 1011
MalI GATC 4 cut(s) 144, 614, 772, 806
MboI GATC 4 cut(s) 142, 612, 770, 804
MboII GAAGA 3 cut(s) 116, 139, 997
MluCI AATT 8 cut(s) 170, 541, 555, 574, 695, 703, 726, 1099
MmeI TCCRAC 2 cut(s) 511, 1015
MnlI CCTC 9 cut(s) 7, 64, 83, 291, 313, 444, 527, 971, 1114
MroXI GAANNNNTTC 2 cut(s) 471, 992
MseI TTAA 8 cut(s) 66, 459, 572, 638, 654, 683, 945, 966
MslI CAYNNNNRTG 4 cut(s) 294, 480, 626, 674
MspCI CTTAAG 1 cut(s) 944
MspI CCGG 2 cut(s) 408, 865
Mva1269I GAATGC 1 cut(s) 984
MwoI GCNNNNNNNGC 5 cut(s) 38, 47, 56, 924, 940
NdeI CATATG 1 cut(s) 217
NdeII GATC 4 cut(s) 142, 612, 770, 804
NlaIII CATG 2 cut(s) 63, 679
NlaIV GGNNCC 2 cut(s) 741, 793
NmuCI GTSAC 1 cut(s) 1011
NspI RCATGY 1 cut(s) 63
OliI CACNNNNGTG 1 cut(s) 294
PctI GAATGC 1 cut(s) 984
PdmI GAANNNNTTC 2 cut(s) 471, 992
PfeI GAWTC 1 cut(s) 1038
PkrI GCNGC 1 cut(s) 307
Ple19I CGATCG 2 cut(s) 145, 615
PpuMI RGGWCCY 1 cut(s) 35
Psp5II RGGWCCY 1 cut(s) 35
PspN4I GGNNCC 2 cut(s) 741, 793
PspPI GGNCC 3 cut(s) 35, 740, 792
PspPPI RGGWCCY 1 cut(s) 35
PstNI CAGNNNCTG 1 cut(s) 38
PvuI CGATCG 2 cut(s) 145, 615
RsaI GTAC 6 cut(s) 93, 287, 369, 506, 607, 644
RsaNI GTAC 6 cut(s) 92, 286, 368, 505, 606, 643
RseI CAYNNNNRTG 4 cut(s) 294, 480, 626, 674
SaqAI TTAA 8 cut(s) 66, 459, 572, 638, 654, 683, 945, 966
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 4 cut(s) 142, 612, 770, 804
Sau96I GGNCC 3 cut(s) 35, 740, 792
SfaNI GCATC 3 cut(s) 655, 886, 1063
SfcI CTRYAG 2 cut(s) 900, 912
SinI GGWCC 2 cut(s) 35, 792
SmiMI CAYNNNNRTG 4 cut(s) 294, 480, 626, 674
SmlI CTYRAG 3 cut(s) 752, 944, 1042
SmoI CTYRAG 3 cut(s) 752, 944, 1042
Sse9I AATT 8 cut(s) 170, 541, 555, 574, 695, 703, 726, 1099
SsiI CCGC 1 cut(s) 70
SspMI CTAG 2 cut(s) 47, 225
StyI CCWWGG 1 cut(s) 224
TaaI ACNGT 4 cut(s) 186, 509, 931, 1031
TaiI ACGT 1 cut(s) 1051
TaqI TCGA 4 cut(s) 96, 769, 783, 798
TasI AATT 8 cut(s) 170, 541, 555, 574, 695, 703, 726, 1099
TatI WGTACW 1 cut(s) 367
TfiI GAWTC 1 cut(s) 1038
Tru1I TTAA 8 cut(s) 66, 459, 572, 638, 654, 683, 945, 966
Tru9I TTAA 8 cut(s) 66, 459, 572, 638, 654, 683, 945, 966
TscAI CASTG 2 cut(s) 934, 1010
TseFI GTSAC 1 cut(s) 1011
TseI GCWGC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 1011
TspDTI ATGAA 3 cut(s) 464, 610, 873
TspGWI ACGGA 1 cut(s) 593
TspRI CASTG 2 cut(s) 934, 1010
Vha464I CTTAAG 1 cut(s) 944
VpaK11BI GGWCC 2 cut(s) 35, 792
XapI RAATTY 6 cut(s) 541, 574, 695, 703, 726, 1099
XceI RCATGY 1 cut(s) 63
XmaJI CCTAGG 1 cut(s) 224
XmnI GAANNNNTTC 2 cut(s) 471, 992
XspI CTAG 2 cut(s) 47, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.