AT1G22170

phosphoglycerate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001245
Physical Location & Seq
Forward (+)
7826268 .. 7828326
2059 bp
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UTR
Exon/CDS
Intron
AT1G22170.2

Sequence Viewer

Length: 1005 bp
ATGGCTACTGCTACGTCTCACCAATCAGTCGTTTCATTTGCTTCTCTCCGGTCTTCTCCTTCTTCTACAATCTCTCAATGTGGATTCAAGATCGATTCTTCACTGAGCTTTACATCGAAAAAGACAAACTTTTGCAAGATTAAAGCAATGGCATCATCAGTTTCTTATGACAACACTCTCTTGTCTCCTTCCAAGACAATCCCTGACAATTCTCAAAAGAAATCAAATGAAGCAGCTTTGATATTGATTAGGCATGGAGAATCTTTATGGAACGAGAAGAATCTTTTTACTGGTTGTGTTGATGTGCCATTGACTGAGAAAGGTGTTGAAGAAGCTATTGAAGCAGGGAAGAGGATTAGTAACATTCCTGTTGATGTTATCTTTACATCTTCTTTGATTCGTGCTCAGATGACTGCAATGCTTGCTATGATTCAACACCGTCGTAAGAAGGTACCGATCATCTTGCACGATGAAAGCGAACAGGCGAAAACTTGGAGTCAAGTTTTTAGTGATGAGACTAAAAACCAATCCATTCCTGTCATACCTGCTTGGCAGCTCAATGAAAGAATGTATGGAGAATTACAAGGTCTTAACAAGCAAGAAACAGCCGAGAGATATGGGAAAGAGCAAGTTCACGAATGGCGTAGGAGTTATGATATTCCTCCTCCCAAAGGAGAGAGTTTGGAGATGTGTGCTGAGAGAGCAGTAGCTTATTTTCAGGACAATATCGAACCGAAGCTTGCAGCTGGAAAGAACGTAATGATAGCTGCTCACGGGAACTCGCTGCGGTCTATCATTATGTATCTTGACAAATTGACTTGCCAGGAGGTGATAAGTCTAGAGCTATCGACAGGTATACCTCTTCTCTACATATTCAAAGAAGGCAAATTCATGAAGCGGGGAAGCCCGGTTGGTCCAACAGAAGCTGGTGTTTATGCTTATACCAAGAGATTGGCTCAATACAGACAGAAGCTAGAGGACGATAGTGAAGTACTCTGTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko05230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map05230
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

334

Amino Acids

37.29

Weight (kDa)

8.39

Isoelectric Point (pI)

49.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 80 - 155 1.8e-18 Histidine phosphatase superfamily (branch 1)
His_Phos_1 PF00300 176 - 283 1.7e-14 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 553
Acc65I GGTACC 1 cut(s) 451
AccB1I GGYRCC 1 cut(s) 451
AccI GTMKAC 1 cut(s) 856
AciI CCGC 2 cut(s) 787, 898
AcsI RAATTY 1 cut(s) 887
AfaI GTAC 2 cut(s) 453, 993
AfiI CCNNNNNNNGG 1 cut(s) 671
AgsI TTSAA 5 cut(s) 88, 329, 341, 434, 877
AjnI CCWGG 1 cut(s) 822
Alw21I GWGCWC 1 cut(s) 406
Alw26I GTCTC 3 cut(s) 21, 189, 509
AlwNI CAGNNNCTG 1 cut(s) 926
ApeKI GCWGC 5 cut(s) 233, 553, 743, 767, 784
ApoI RAATTY 1 cut(s) 887
Asp718I GGTACC 1 cut(s) 451
AspS9I GGNCC 1 cut(s) 914
AsuC2I CCSGG 1 cut(s) 908
AsuHPI GGTGA 2 cut(s) 11, 841
AvaII GGWCC 1 cut(s) 914
BanI GGYRCC 1 cut(s) 451
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 406
BbvI GCAGC 5 cut(s) 245, 565, 754, 755, 771
BcgI CGANNNNNNTGC 2 cut(s) 445, 479
BciT130I CCWGG 1 cut(s) 824
BcnI CCSGG 1 cut(s) 908
BcoDI GTCTC 3 cut(s) 21, 189, 509
BfaI CTAG 2 cut(s) 839, 974
BfuAI ACCTGC 1 cut(s) 553
BisI GCNGC 5 cut(s) 234, 554, 744, 768, 785
BlsI GCNGC 5 cut(s) 235, 555, 745, 769, 786
BmcAI AGTACT 1 cut(s) 993
Bme1390I CCNGG 2 cut(s) 824, 908
Bme18I GGWCC 1 cut(s) 914
BmgT120I GGNCC 1 cut(s) 914
BmiI GGNNCC 1 cut(s) 453
BmrFI CCNGG 2 cut(s) 824, 908
BmsI GCATC 1 cut(s) 161
BpiI GAAGAC 1 cut(s) 45
BplI GAGNNNNNCTC 2 cut(s) 940, 972
BpuMI CCSGG 1 cut(s) 908
Bsa29I ATCGAT 1 cut(s) 93
BsaWI WCCGGW 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 671
Bse1I ACTGG 1 cut(s) 295
Bse3DI GCAATG 2 cut(s) 153, 423
BseBI CCWGG 1 cut(s) 824
BseCI ATCGAT 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 671
BseMI GCAATG 2 cut(s) 153, 423
BseMII CTCAG 4 cut(s) 95, 306, 419, 687
BseNI ACTGG 1 cut(s) 295
BseRI GAGGAG 1 cut(s) 654
BseXI GCAGC 5 cut(s) 245, 565, 754, 755, 771
BshNI GGYRCC 1 cut(s) 451
BshVI ATCGAT 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 406
BsiSI CCGG 2 cut(s) 49, 908
BslI CCNNNNNNNGG 1 cut(s) 671
BsmAI GTCTC 3 cut(s) 21, 189, 509
BsmBI CGTCTC 1 cut(s) 21
Bsp1286I GDGCHC 1 cut(s) 406
Bsp143I GATC 2 cut(s) 90, 456
BspACI CCGC 2 cut(s) 787, 898
BspCNI CTCAG 4 cut(s) 96, 307, 418, 688
BspDI ATCGAT 1 cut(s) 93
BspHI TCATGA 1 cut(s) 891
BspLI GGNNCC 1 cut(s) 453
BspMI ACCTGC 1 cut(s) 553
BspT107I GGYRCC 1 cut(s) 451
BsrDI GCAATG 2 cut(s) 153, 423
BsrI ACTGG 1 cut(s) 295
BssMI GATC 2 cut(s) 90, 456
BssNAI GTATAC 1 cut(s) 857
Bst1107I GTATAC 1 cut(s) 857
Bst2UI CCWGG 1 cut(s) 824
Bst4CI ACNGT 1 cut(s) 440
Bst6I CTCTTC 2 cut(s) 344, 867
BstAPI GCANNNNNTGC 1 cut(s) 422
BstC8I GCNNGC 2 cut(s) 423, 741
BstDEI CTNAG 4 cut(s) 104, 315, 405, 696
BstENI CCTNNNNNAGG 1 cut(s) 669
BstKTI GATC 2 cut(s) 93, 459
BstMAI GTCTC 3 cut(s) 21, 189, 509
BstMBI GATC 2 cut(s) 90, 456
BstMWI GCNNNNNNNGC 3 cut(s) 341, 422, 701
BstNI CCWGG 1 cut(s) 824
BstSCI CCNGG 2 cut(s) 822, 906
BstV1I GCAGC 5 cut(s) 245, 565, 754, 755, 771
BstV2I GAAGAC 1 cut(s) 45
BstXI CCANNNNNNTGG 1 cut(s) 952
BstZ17I GTATAC 1 cut(s) 857
Bsu15I ATCGAT 1 cut(s) 93
BsuTUI ATCGAT 1 cut(s) 93
BtsIMutI CAGTG 1 cut(s) 101
BveI ACCTGC 1 cut(s) 553
Cac8I GCNNGC 2 cut(s) 423, 741
CaiI CAGNNNCTG 1 cut(s) 926
CciI TCATGA 1 cut(s) 891
Cfr13I GGNCC 1 cut(s) 914
ClaI ATCGAT 1 cut(s) 93
Csp6I GTAC 2 cut(s) 452, 992
CviAII CATG 2 cut(s) 254, 892
CviQI GTAC 2 cut(s) 452, 992
DdeI CTNAG 4 cut(s) 104, 315, 405, 696
DpnI GATC 2 cut(s) 92, 458
DpnII GATC 2 cut(s) 90, 456
Eam1104I CTCTTC 2 cut(s) 344, 867
EarI CTCTTC 2 cut(s) 344, 867
Eco47I GGWCC 1 cut(s) 914
EcoNI CCTNNNNNAGG 1 cut(s) 669
EcoRII CCWGG 1 cut(s) 822
Esp3I CGTCTC 1 cut(s) 21
FaeI CATG 2 cut(s) 257, 895
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FatI CATG 2 cut(s) 253, 891
FauI CCCGC 1 cut(s) 891
FblI GTMKAC 1 cut(s) 856
Fnu4HI GCNGC 5 cut(s) 234, 554, 744, 768, 785
Fsp4HI GCNGC 5 cut(s) 234, 554, 744, 768, 785
FspBI CTAG 2 cut(s) 839, 974
GluI GCNGC 5 cut(s) 234, 554, 744, 768, 785
HapII CCGG 2 cut(s) 49, 908
Hin1II CATG 2 cut(s) 257, 895
HindIII AAGCTT 1 cut(s) 737
HinfI GANTC 7 cut(s) 84, 95, 260, 280, 397, 430, 496
HpaII CCGG 2 cut(s) 49, 908
HphI GGTGA 2 cut(s) 11, 841
Hpy166II GTNNAC 2 cut(s) 634, 857
Hpy188I TCNGA 1 cut(s) 408
Hpy188III TCNNGA 6 cut(s) 88, 635, 719, 806, 839, 892
Hpy8I GTNNAC 2 cut(s) 634, 857
Hpy99I CGWCG 1 cut(s) 444
HpyAV CCTTC 4 cut(s) 69, 198, 442, 875
HpyCH4III ACNGT 1 cut(s) 440
HpyCH4IV ACGT 2 cut(s) 14, 756
HpyCH4V TGCA 4 cut(s) 135, 416, 466, 743
HpyF10VI GCNNNNNNNGC 3 cut(s) 341, 422, 701
HpyF3I CTNAG 4 cut(s) 104, 315, 405, 696
HpySE526I ACGT 2 cut(s) 14, 756
Hsp92II CATG 2 cut(s) 257, 895
KpnI GGTACC 1 cut(s) 455
Kzo9I GATC 2 cut(s) 90, 456
Lsp1109I GCAGC 5 cut(s) 245, 565, 754, 755, 771
LweI GCATC 1 cut(s) 161
MaeI CTAG 2 cut(s) 839, 974
MaeII ACGT 2 cut(s) 14, 756
MaeIII GTNAC 1 cut(s) 359
MalI GATC 2 cut(s) 92, 458
MboI GATC 2 cut(s) 90, 456
MboII GAAGA 8 cut(s) 45, 54, 90, 289, 341, 361, 381, 854
MhlI GDGCHC 1 cut(s) 406
MluCI AATT 4 cut(s) 208, 578, 812, 887
MlyI GAGTC 1 cut(s) 505
MmeI TCCRAC 1 cut(s) 941
MnlI CCTC 6 cut(s) 345, 672, 675, 820, 870, 970
MseI TTAA 2 cut(s) 141, 591
MspA1I CMGCKG 1 cut(s) 746
MspI CCGG 2 cut(s) 49, 908
MspR9I CCNGG 2 cut(s) 824, 908
MvaI CCWGG 1 cut(s) 824
MwoI GCNNNNNNNGC 3 cut(s) 341, 422, 701
NciI CCSGG 1 cut(s) 908
NdeII GATC 2 cut(s) 90, 456
NlaIII CATG 2 cut(s) 257, 895
NlaIV GGNNCC 1 cut(s) 453
NmeAIII GCCGAG 1 cut(s) 634
PagI TCATGA 1 cut(s) 891
PcsI WCGNNNNNNNCGW 1 cut(s) 474
PfeI GAWTC 6 cut(s) 84, 95, 260, 280, 397, 430
PkrI GCNGC 5 cut(s) 235, 555, 745, 769, 786
PleI GAGTC 1 cut(s) 504
PpsI GAGTC 1 cut(s) 504
Psp6I CCWGG 1 cut(s) 822
PspGI CCWGG 1 cut(s) 822
PspN4I GGNNCC 1 cut(s) 453
PspPI GGNCC 1 cut(s) 914
PstNI CAGNNNCTG 1 cut(s) 926
PvuII CAGCTG 1 cut(s) 746
RsaI GTAC 2 cut(s) 453, 993
RsaNI GTAC 2 cut(s) 452, 992
SaqAI TTAA 2 cut(s) 141, 591
SatI GCNGC 5 cut(s) 234, 554, 744, 768, 785
Sau3AI GATC 2 cut(s) 90, 456
Sau96I GGNCC 1 cut(s) 914
ScaI AGTACT 1 cut(s) 993
SchI GAGTC 1 cut(s) 505
ScrFI CCNGG 2 cut(s) 824, 908
SduI GDGCHC 1 cut(s) 406
SfaNI GCATC 1 cut(s) 161
SinI GGWCC 1 cut(s) 914
Sse9I AATT 4 cut(s) 208, 578, 812, 887
SsiI CCGC 2 cut(s) 787, 898
SspMI CTAG 2 cut(s) 839, 974
StyD4I CCNGG 2 cut(s) 822, 906
TaaI ACNGT 1 cut(s) 440
TaiI ACGT 2 cut(s) 17, 759
TaqI TCGA 4 cut(s) 93, 116, 729, 848
TasI AATT 4 cut(s) 208, 578, 812, 887
TatI WGTACW 1 cut(s) 991
TfiI GAWTC 6 cut(s) 84, 95, 260, 280, 397, 430
Tru1I TTAA 2 cut(s) 141, 591
Tru9I TTAA 2 cut(s) 141, 591
TscAI CASTG 1 cut(s) 108
TseI GCWGC 5 cut(s) 233, 553, 743, 767, 784
TspDTI ATGAA 6 cut(s) 24, 243, 486, 576, 880, 908
TspRI CASTG 1 cut(s) 108
VpaK11BI GGWCC 1 cut(s) 914
XagI CCTNNNNNAGG 1 cut(s) 669
XapI RAATTY 1 cut(s) 887
XbaI TCTAGA 1 cut(s) 838
XmiI GTMKAC 1 cut(s) 856
XspI CTAG 2 cut(s) 839, 974
ZrmI AGTACT 1 cut(s) 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.