FvH4_5g37930

Phosphoglycerate mutase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001245
Physical Location & Seq
Reverse (-)
27979825 .. 27983362
3538 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37930.t6

Sequence Viewer

Length: 1038 bp
ATGGCTACTGCTGTGTTTCACCAATCCATTGGAACTCACCAGTCCCATGGACATCTCTGTAACTCTGGCATTCATCAAGAATTGGGGAAAAGTTCAGTGAGATTGATTTCAAAGGCTTTTGATGTTAATGTTGGACTGTCTAAAGGAGTATGCTACAGCCCTGGTAAGAGGAACCTTGGTGTAATTCGAGCTTCGAGTTCCCAAACTTCAGTGATTGATCATGTTTCGTCCCCCTCAAAGAACAAAGAAAGTGATTCGCGAAAGAAACCTAATGAAGCAGCTTTGATTTTGATTAGGCATGGTGAATCATTGTGGAACGAAAAGAACTTGTTCACAGGCTGTGTTGATGTGCCTCTGAGCAAGAAGGGTGTAGAAGAGGCAATCGAAGCTGGTAAGAGAATCAGCAACATACCTGTCGACATGATCTATACATCTGCACTGATTCGTGCACAGATGACTGCCATGCTTGCCATGACACAGCACCGTCGTAAGAAGGTGCCAGTTATGTTGCATAATGAAAGCGAACAGGCTAGGGCATGGAGTCAGATTTTTAGTGAAGACACCAAATTGCAATCCATTCCTGTGGTAGCAGATTGGCGTTTGAATGAAAGAATGTATGGGGAATTGCAGGGTCTTAATAAACAAGAAACAGCAGATAGATATGGGAAGGAACAAGTTCATGAGTGGCGTCGGAGTTATGACGTACCCCCTCCCAATGGCGAGAGTTTGGAAATGTGTGCTGAAAGAGCTGTTGCTTATTTCAAAGATCAAATTGAACCCCAACTCTTATCTGGGAAGAATATTATGATTGCTGCCCATGGGAATTCATTGAGATCTATTATCATGTATCTGGACAAGCTAACTTCCCAAGAGGTTATTAGTTTAGAACTGTCAACTGGAATACCCATGCTTTACATTTTCAAAGAAGGAAAATTCACTCGGAGGGGAAGTCCTGCGGCACCTACTGAGGCTGGGGTTTATGCCTACACCAAGAAATTGGCACTTTACAGGCAGAAGTTAGATGAGATGGTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko05230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map05230
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

346

Amino Acids

38.6

Weight (kDa)

9.17

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 95 - 162 7.9e-18 Histidine phosphatase superfamily (branch 1)
His_Phos_1 PF00300 182 - 302 8.4e-17 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 496, 958
AccI GTMKAC 1 cut(s) 417
AccII CGCG 1 cut(s) 259
AciI CCGC 1 cut(s) 956
AcsI RAATTY 2 cut(s) 823, 932
AcuI CTGAAG 1 cut(s) 192
AcyI GRCGYC 1 cut(s) 688
AfaI GTAC 1 cut(s) 705
AfiI CCNNNNNNNGG 1 cut(s) 716
AgsI TTSAA 5 cut(s) 111, 604, 763, 776, 922
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 5 cut(s) 191, 281, 389, 749, 859
AluI AGCT 5 cut(s) 191, 281, 389, 749, 859
Alw21I GWGCWC 1 cut(s) 451
Alw44I GTGCAC 1 cut(s) 447
ApaLI GTGCAC 1 cut(s) 447
ApeKI GCWGC 2 cut(s) 278, 812
ApoI RAATTY 2 cut(s) 823, 932
Asp700I GAANNNNTTC 2 cut(s) 329, 675
AsuHPI GGTGA 3 cut(s) 11, 29, 314
BaeGI GKGCMC 1 cut(s) 451
BanI GGYRCC 2 cut(s) 496, 958
BbsI GAAGAC 1 cut(s) 564
Bbv12I GWGCWC 1 cut(s) 451
BbvI GCAGC 2 cut(s) 290, 799
BccI CCATC 1 cut(s) 1021
BciT130I CCWGG 1 cut(s) 162
BclI TGATCA 1 cut(s) 217
BfaI CTAG 1 cut(s) 531
BfmI CTRYAG 1 cut(s) 154
BglII AGATCT 1 cut(s) 833
BisI GCNGC 3 cut(s) 279, 813, 957
BlsI GCNGC 3 cut(s) 280, 814, 958
Bme1390I CCNGG 1 cut(s) 162
BmiI GGNNCC 3 cut(s) 173, 498, 960
BmrFI CCNGG 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 564
BsaHI GRCGYC 1 cut(s) 688
BsaJI CCNNGG 4 cut(s) 46, 160, 175, 817
BsaXI ACNNNNNCTCC 2 cut(s) 934, 964
Bsc4I CCNNNNNNNGG 1 cut(s) 716
Bse1I ACTGG 3 cut(s) 40, 500, 901
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 4 cut(s) 46, 160, 175, 817
BseLI CCNNNNNNNGG 1 cut(s) 716
BseMII CTCAG 2 cut(s) 347, 957
BseNI ACTGG 3 cut(s) 40, 500, 901
BseSI GKGCMC 1 cut(s) 451
BseXI GCAGC 2 cut(s) 290, 799
BseYI CCCAGC 1 cut(s) 971
BsgI GTGCAG 1 cut(s) 420
Bsh1236I CGCG 1 cut(s) 259
BshNI GGYRCC 2 cut(s) 496, 958
BsiHKAI GWGCWC 1 cut(s) 451
BslFI GGGAC 2 cut(s) 28, 214
BslI CCNNNNNNNGG 1 cut(s) 716
BsmFI GGGAC 2 cut(s) 28, 214
BsmI GAATGC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 451
Bsp143I GATC 4 cut(s) 217, 423, 766, 833
Bsp19I CCATGG 2 cut(s) 46, 817
Bsp68I TCGCGA 1 cut(s) 259
BspACI CCGC 1 cut(s) 956
BspCNI CTCAG 2 cut(s) 348, 958
BspFNI CGCG 1 cut(s) 259
BspHI TCATGA 1 cut(s) 679
BspLI GGNNCC 3 cut(s) 173, 498, 960
BspT107I GGYRCC 2 cut(s) 496, 958
BsrI ACTGG 3 cut(s) 40, 500, 901
BssECI CCNNGG 4 cut(s) 46, 160, 175, 817
BssMI GATC 4 cut(s) 217, 423, 766, 833
BssNI GRCGYC 1 cut(s) 688
BssT1I CCWWGG 3 cut(s) 46, 175, 817
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 3 cut(s) 138, 485, 891
Bst6I CTCTTC 1 cut(s) 369
BstACI GRCGYC 1 cut(s) 688
BstC8I GCNNGC 1 cut(s) 468
BstDEI CTNAG 2 cut(s) 356, 966
BstDSI CCRYGG 2 cut(s) 46, 817
BstFNI CGCG 1 cut(s) 259
BstKTI GATC 4 cut(s) 220, 426, 769, 836
BstMBI GATC 4 cut(s) 217, 423, 766, 833
BstMWI GCNNNNNNNGC 3 cut(s) 386, 467, 746
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 154
BstSLI GKGCMC 1 cut(s) 451
BstUI CGCG 1 cut(s) 259
BstV1I GCAGC 2 cut(s) 290, 799
BstV2I GAAGAC 1 cut(s) 564
BstX2I RGATCY 1 cut(s) 833
BstXI CCANNNNNNTGG 4 cut(s) 29, 47, 583, 997
BstYI RGATCY 1 cut(s) 833
BtgI CCRYGG 2 cut(s) 46, 817
BtsIMutI CAGTG 3 cut(s) 102, 216, 437
BtuMI TCGCGA 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 468
CciI TCATGA 1 cut(s) 679
CseI GACGC 1 cut(s) 677
Csp6I GTAC 1 cut(s) 704
CviQI GTAC 1 cut(s) 704
DdeI CTNAG 2 cut(s) 356, 966
DpnI GATC 4 cut(s) 219, 425, 768, 835
DpnII GATC 4 cut(s) 217, 423, 766, 833
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco130I CCWWGG 3 cut(s) 46, 175, 817
Eco57I CTGAAG 1 cut(s) 192
EcoRI GAATTC 1 cut(s) 823
EcoRII CCWGG 1 cut(s) 160
EcoT14I CCWWGG 3 cut(s) 46, 175, 817
ErhI CCWWGG 3 cut(s) 46, 175, 817
FaqI GGGAC 2 cut(s) 28, 214
FbaI TGATCA 1 cut(s) 217
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 3 cut(s) 279, 813, 957
Fsp4HI GCNGC 3 cut(s) 279, 813, 957
FspBI CTAG 1 cut(s) 531
GluI GCNGC 3 cut(s) 279, 813, 957
GsaI CCCAGC 1 cut(s) 975
HgaI GACGC 1 cut(s) 677
Hin1I GRCGYC 1 cut(s) 688
HincII GTYRAC 2 cut(s) 418, 894
HindII GTYRAC 2 cut(s) 418, 894
HinfI GANTC 5 cut(s) 254, 305, 399, 442, 541
HphI GGTGA 3 cut(s) 11, 29, 314
Hpy166II GTNNAC 4 cut(s) 333, 418, 449, 894
Hpy188I TCNGA 4 cut(s) 357, 546, 693, 942
Hpy188III TCNNGA 4 cut(s) 77, 258, 680, 851
Hpy8I GTNNAC 4 cut(s) 333, 418, 449, 894
Hpy99I CGWCG 2 cut(s) 489, 693
HpyAV CCTTC 4 cut(s) 358, 487, 661, 920
HpyCH4III ACNGT 3 cut(s) 138, 485, 891
HpyCH4IV ACGT 1 cut(s) 702
HpyCH4V TGCA 5 cut(s) 437, 449, 511, 571, 628
HpyF10VI GCNNNNNNNGC 3 cut(s) 386, 467, 746
HpyF3I CTNAG 2 cut(s) 356, 966
HpySE526I ACGT 1 cut(s) 702
Hsp92I GRCGYC 1 cut(s) 688
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 4 cut(s) 217, 423, 766, 833
Lsp1109I GCAGC 2 cut(s) 290, 799
MaeI CTAG 1 cut(s) 531
MaeII ACGT 1 cut(s) 702
MaeIII GTNAC 1 cut(s) 59
MalI GATC 4 cut(s) 219, 425, 768, 835
MboI GATC 4 cut(s) 217, 423, 766, 833
MboII GAAGA 3 cut(s) 386, 569, 808
MflI RGATCY 1 cut(s) 833
MhlI GDGCHC 1 cut(s) 451
MluCI AATT 8 cut(s) 80, 183, 566, 623, 771, 823, 932, 995
MlyI GAGTC 1 cut(s) 550
MmeI TCCRAC 2 cut(s) 112, 671
MnlI CCTC 8 cut(s) 162, 244, 363, 370, 720, 865, 936, 961
MroXI GAANNNNTTC 2 cut(s) 329, 675
MseI TTAA 2 cut(s) 126, 636
MslI CAYNNNNRTG 1 cut(s) 581
MspR9I CCNGG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 69
MvaI CCWGG 1 cut(s) 162
MvnI CGCG 1 cut(s) 259
MwoI GCNNNNNNNGC 3 cut(s) 386, 467, 746
NcoI CCATGG 2 cut(s) 46, 817
NdeII GATC 4 cut(s) 217, 423, 766, 833
NlaIV GGNNCC 3 cut(s) 173, 498, 960
NruI TCGCGA 1 cut(s) 259
PagI TCATGA 1 cut(s) 679
PctI GAATGC 1 cut(s) 69
PdmI GAANNNNTTC 2 cut(s) 329, 675
PfeI GAWTC 4 cut(s) 254, 305, 399, 442
PkrI GCNGC 3 cut(s) 280, 814, 958
PleI GAGTC 1 cut(s) 549
PpsI GAGTC 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 160
PspFI CCCAGC 1 cut(s) 971
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 3 cut(s) 173, 498, 960
PsuI RGATCY 1 cut(s) 833
RruI TCGCGA 1 cut(s) 259
RsaI GTAC 1 cut(s) 705
RsaNI GTAC 1 cut(s) 704
RseI CAYNNNNRTG 1 cut(s) 581
SalI GTCGAC 1 cut(s) 416
SaqAI TTAA 2 cut(s) 126, 636
SatI GCNGC 3 cut(s) 279, 813, 957
Sau3AI GATC 4 cut(s) 217, 423, 766, 833
SchI GAGTC 1 cut(s) 550
ScrFI CCNGG 1 cut(s) 162
SduI GDGCHC 1 cut(s) 451
SfcI CTRYAG 1 cut(s) 154
SmiMI CAYNNNNRTG 1 cut(s) 581
Sse9I AATT 8 cut(s) 80, 183, 566, 623, 771, 823, 932, 995
SsiI CCGC 1 cut(s) 956
SspI AATATT 1 cut(s) 802
SspMI CTAG 1 cut(s) 531
StyD4I CCNGG 1 cut(s) 160
StyI CCWWGG 3 cut(s) 46, 175, 817
TaaI ACNGT 3 cut(s) 138, 485, 891
TaiI ACGT 1 cut(s) 705
TaqI TCGA 4 cut(s) 187, 194, 384, 417
TasI AATT 8 cut(s) 80, 183, 566, 623, 771, 823, 932, 995
TauI GCSGC 1 cut(s) 959
TfiI GAWTC 4 cut(s) 254, 305, 399, 442
Tru1I TTAA 2 cut(s) 126, 636
Tru9I TTAA 2 cut(s) 126, 636
TscAI CASTG 3 cut(s) 102, 216, 444
TseI GCWGC 2 cut(s) 278, 812
TspDTI ATGAA 7 cut(s) 62, 288, 531, 621, 668, 816, 1022
TspRI CASTG 3 cut(s) 102, 216, 444
VneI GTGCAC 1 cut(s) 447
XapI RAATTY 2 cut(s) 823, 932
XcmI CCANNNNNNNNNTGG 1 cut(s) 788
XmiI GTMKAC 1 cut(s) 417
XmnI GAANNNNTTC 2 cut(s) 329, 675
XspI CTAG 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.