Rw7G040620

Phosphoglycerate mutase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001245
Physical Location & Seq
Reverse (-)
63258019 .. 63260280
2262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G040620.1

Sequence Viewer

Length: 1032 bp
ATGGCTACTGCTGTGTTTCACCAATCCATTGGAACTCACCAGTCCCATGGACTTATCTCTGGCATTCATCAACAGTTGGGGAAAAGTTCAGTGAGATTGATTTCAAAGGCGTTCGAGGTTGATGTTGGACTGTCAAGAAGAGTATGCTACAACTCTGGTCTAAGAAACCTTGGTGTAATTCAAGCTTCGACTTCCCAAACTTCAGTGATTGATCATGCTTCGTCCCCCTCAAAGAACAAAGAAAGTGACCCGCGAAAGAAATCTAATGAAGCAGCTTTGATTTTGATTAGGCATGGTGAATCATTGTGGAACGAAAAGAACTTGTTCACTGGCTGTGTTGATGTGCCGCTGAGCAAGAAGGGTGTAGAAGAGGCACTTGAAGCTGGCAAGAGAATCAGCAACATACCTGTCGACATGATCTATACATCTGCACTGATTCGTGCACAGATGACTGCCATGCTTGCCATGACACAGCACCGTCGTAAGAAGGTGCCAGTTATGTTGCATAATGAAAGCGAACAGGCTAGGGCATGGAGCCAGATTTTTAGTGAAGACACAAAATTGCAATCCATTCCTGTGGTCGCGGATTGGCGCTTGAATGAAAGAATGTATGGGGAATTACAGGGTCTCAATAAACAAGAAACAGCAGATAGATATGGGAAGGAACAAGTTCATGAGTGGCGTAGGAGTTATGATGTACCCCCTCCCAATGGCGAGAGTTTGGAAATGTGTGCTGAAAGAGCTGTTGCTTATTTTAAAGATCAAATTGAACCCCAACTCTTATCTGGAAAGAATATTATGATTGCTGCCCACGGGAATTCATTGAGATCTATTATCATGTATCTGGATAAGCTAACTTCCCAAGAGGTTATTAGTTTAGAACTGTCAACTGGAATACCGATGCTTTACATTTTCAAAGAGGGAAAATTCACTCGGAGGGGAAGTCCTTCGGCACCTACTGAGGCTGGGGTTTATGCCTACACCAAGAAGTTGGCCCTTTACAGGCAGAAGTTAGATGAGATGGTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko05230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map05230
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

343

Amino Acids

38.47

Weight (kDa)

9.15

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 93 - 160 5.5e-18 Histidine phosphatase superfamily (branch 1)
His_Phos_1 PF00300 179 - 297 8.7e-16 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 490, 952
AccI GTMKAC 1 cut(s) 411
AccII CGCG 2 cut(s) 253, 584
AciI CCGC 3 cut(s) 251, 347, 584
AcsI RAATTY 2 cut(s) 817, 926
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 1 cut(s) 699
AfiI CCNNNNNNNGG 2 cut(s) 710, 1002
AgsI TTSAA 6 cut(s) 105, 182, 380, 598, 770, 916
AluBI AGCT 5 cut(s) 185, 275, 383, 743, 853
AluI AGCT 5 cut(s) 185, 275, 383, 743, 853
Alw21I GWGCWC 1 cut(s) 445
Alw26I GTCTC 1 cut(s) 632
Alw44I GTGCAC 1 cut(s) 441
AoxI GGCC 1 cut(s) 993
ApaLI GTGCAC 1 cut(s) 441
ApeKI GCWGC 2 cut(s) 272, 806
ApoI RAATTY 2 cut(s) 817, 926
Asp700I GAANNNNTTC 3 cut(s) 323, 669, 946
AspLEI GCGC 1 cut(s) 594
AspS9I GGNCC 1 cut(s) 994
AsuHPI GGTGA 3 cut(s) 11, 29, 308
BaeGI GKGCMC 1 cut(s) 445
BanI GGYRCC 2 cut(s) 490, 952
BbsI GAAGAC 1 cut(s) 558
Bbv12I GWGCWC 1 cut(s) 445
BbvI GCAGC 2 cut(s) 284, 793
BccI CCATC 1 cut(s) 1015
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 632
BfaI CTAG 1 cut(s) 525
BfoI RGCGCY 1 cut(s) 595
BglII AGATCT 1 cut(s) 827
BisI GCNGC 3 cut(s) 273, 347, 807
BlpI GCTNAGC 1 cut(s) 350
BlsI GCNGC 3 cut(s) 274, 348, 808
BmgT120I GGNCC 1 cut(s) 994
BmiI GGNNCC 3 cut(s) 492, 536, 954
BmsI GCATC 1 cut(s) 891
BpiI GAAGAC 1 cut(s) 558
Bpu1102I GCTNAGC 1 cut(s) 350
BsaI GGTCTC 1 cut(s) 632
BsaJI CCNNGG 3 cut(s) 46, 169, 811
BsaXI ACNNNNNCTCC 2 cut(s) 928, 958
Bsc4I CCNNNNNNNGG 2 cut(s) 710, 1002
Bse1I ACTGG 4 cut(s) 40, 334, 494, 895
BseDI CCNNGG 3 cut(s) 46, 169, 811
BseLI CCNNNNNNNGG 2 cut(s) 710, 1002
BseMII CTCAG 2 cut(s) 341, 951
BseNI ACTGG 4 cut(s) 40, 334, 494, 895
BseSI GKGCMC 1 cut(s) 445
BseXI GCAGC 2 cut(s) 284, 793
BseYI CCCAGC 1 cut(s) 965
BsgI GTGCAG 1 cut(s) 414
Bsh1236I CGCG 2 cut(s) 253, 584
BshFI GGCC 1 cut(s) 995
BshNI GGYRCC 2 cut(s) 490, 952
BsiHKAI GWGCWC 1 cut(s) 445
BslFI GGGAC 2 cut(s) 28, 208
BslI CCNNNNNNNGG 2 cut(s) 710, 1002
BsmAI GTCTC 1 cut(s) 632
BsmFI GGGAC 2 cut(s) 28, 208
BsmI GAATGC 1 cut(s) 63
BsnI GGCC 1 cut(s) 995
Bso31I GGTCTC 1 cut(s) 632
Bsp1286I GDGCHC 1 cut(s) 445
Bsp143I GATC 4 cut(s) 211, 417, 760, 827
Bsp1720I GCTNAGC 1 cut(s) 350
Bsp19I CCATGG 1 cut(s) 46
BspACI CCGC 3 cut(s) 251, 347, 584
BspANI GGCC 1 cut(s) 995
BspCNI CTCAG 2 cut(s) 342, 952
BspFNI CGCG 2 cut(s) 253, 584
BspHI TCATGA 1 cut(s) 673
BspLI GGNNCC 3 cut(s) 492, 536, 954
BspT107I GGYRCC 2 cut(s) 490, 952
BspTNI GGTCTC 1 cut(s) 632
BsrI ACTGG 4 cut(s) 40, 334, 494, 895
BssECI CCNNGG 3 cut(s) 46, 169, 811
BssMI GATC 4 cut(s) 211, 417, 760, 827
BssT1I CCWWGG 2 cut(s) 46, 169
Bst4CI ACNGT 4 cut(s) 75, 132, 479, 885
Bst6I CTCTTC 2 cut(s) 133, 363
BstC8I GCNNGC 2 cut(s) 385, 462
BstDEI CTNAG 3 cut(s) 161, 350, 960
BstDSI CCRYGG 2 cut(s) 46, 811
BstFNI CGCG 2 cut(s) 253, 584
BstH2I RGCGCY 1 cut(s) 595
BstHHI GCGC 1 cut(s) 594
BstKTI GATC 4 cut(s) 214, 420, 763, 830
BstMAI GTCTC 1 cut(s) 632
BstMBI GATC 4 cut(s) 211, 417, 760, 827
BstMWI GCNNNNNNNGC 3 cut(s) 380, 461, 740
BstSLI GKGCMC 1 cut(s) 445
BstUI CGCG 2 cut(s) 253, 584
BstV1I GCAGC 2 cut(s) 284, 793
BstV2I GAAGAC 1 cut(s) 558
BstX2I RGATCY 1 cut(s) 827
BstXI CCANNNNNNTGG 4 cut(s) 29, 47, 577, 991
BstYI RGATCY 1 cut(s) 827
BsuRI GGCC 1 cut(s) 995
BtgI CCRYGG 2 cut(s) 46, 811
BtsIMutI CAGTG 4 cut(s) 96, 210, 327, 431
Cac8I GCNNGC 2 cut(s) 385, 462
CciI TCATGA 1 cut(s) 673
CfoI GCGC 1 cut(s) 594
Cfr13I GGNCC 1 cut(s) 994
Csp6I GTAC 1 cut(s) 698
CviAII CATG 9 cut(s) 47, 215, 293, 415, 457, 466, 531, 674, 838
CviQI GTAC 1 cut(s) 698
DdeI CTNAG 3 cut(s) 161, 350, 960
DpnI GATC 4 cut(s) 213, 419, 762, 829
DpnII GATC 4 cut(s) 211, 417, 760, 827
DraI TTTAAA 1 cut(s) 757
Eam1104I CTCTTC 2 cut(s) 133, 363
EarI CTCTTC 2 cut(s) 133, 363
Eco130I CCWWGG 2 cut(s) 46, 169
Eco31I GGTCTC 1 cut(s) 632
Eco57I CTGAAG 1 cut(s) 186
EcoRI GAATTC 1 cut(s) 817
EcoT14I CCWWGG 2 cut(s) 46, 169
ErhI CCWWGG 2 cut(s) 46, 169
FaeI CATG 9 cut(s) 50, 218, 296, 418, 460, 469, 534, 677, 841
FalI AAGNNNNNCTT 2 cut(s) 360, 392
FaqI GGGAC 2 cut(s) 28, 208
FatI CATG 9 cut(s) 46, 214, 292, 414, 456, 465, 530, 673, 837
FauI CCCGC 1 cut(s) 258
FbaI TGATCA 1 cut(s) 211
FblI GTMKAC 1 cut(s) 411
Fnu4HI GCNGC 3 cut(s) 273, 347, 807
Fsp4HI GCNGC 3 cut(s) 273, 347, 807
FspBI CTAG 1 cut(s) 525
GlaI GCGC 1 cut(s) 593
GluI GCNGC 3 cut(s) 273, 347, 807
GsaI CCCAGC 1 cut(s) 969
HaeII RGCGCY 1 cut(s) 595
HaeIII GGCC 1 cut(s) 995
HhaI GCGC 1 cut(s) 594
Hin1II CATG 9 cut(s) 50, 218, 296, 418, 460, 469, 534, 677, 841
Hin6I GCGC 1 cut(s) 592
HinP1I GCGC 1 cut(s) 592
HincII GTYRAC 2 cut(s) 412, 888
HindII GTYRAC 2 cut(s) 412, 888
HindIII AAGCTT 1 cut(s) 183
HinfI GANTC 3 cut(s) 299, 393, 436
HphI GGTGA 3 cut(s) 11, 29, 308
Hpy166II GTNNAC 4 cut(s) 327, 412, 443, 888
Hpy188I TCNGA 1 cut(s) 936
Hpy188III TCNNGA 4 cut(s) 135, 674, 786, 845
Hpy8I GTNNAC 4 cut(s) 327, 412, 443, 888
Hpy99I CGWCG 1 cut(s) 483
HpyAV CCTTC 4 cut(s) 352, 481, 655, 957
HpyCH4III ACNGT 4 cut(s) 75, 132, 479, 885
HpyCH4V TGCA 4 cut(s) 431, 443, 505, 565
HpyF10VI GCNNNNNNNGC 3 cut(s) 380, 461, 740
HpyF3I CTNAG 3 cut(s) 161, 350, 960
Hsp92II CATG 9 cut(s) 50, 218, 296, 418, 460, 469, 534, 677, 841
HspAI GCGC 1 cut(s) 592
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 4 cut(s) 211, 417, 760, 827
LmnI GCTCC 1 cut(s) 534
Lsp1109I GCAGC 2 cut(s) 284, 793
LweI GCATC 1 cut(s) 891
MaeI CTAG 1 cut(s) 525
MaeIII GTNAC 1 cut(s) 245
MalI GATC 4 cut(s) 213, 419, 762, 829
MboI GATC 4 cut(s) 211, 417, 760, 827
MboII GAAGA 3 cut(s) 150, 380, 563
MflI RGATCY 1 cut(s) 827
MhlI GDGCHC 1 cut(s) 445
MluCI AATT 6 cut(s) 177, 560, 617, 765, 817, 926
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 8 cut(s) 109, 238, 364, 714, 859, 913, 930, 955
MroXI GAANNNNTTC 3 cut(s) 323, 669, 946
MseI TTAA 1 cut(s) 756
MslI CAYNNNNRTG 1 cut(s) 575
MspA1I CMGCKG 1 cut(s) 349
Mva1269I GAATGC 1 cut(s) 63
MvnI CGCG 2 cut(s) 253, 584
MwoI GCNNNNNNNGC 3 cut(s) 380, 461, 740
NcoI CCATGG 1 cut(s) 46
NdeII GATC 4 cut(s) 211, 417, 760, 827
NlaIII CATG 9 cut(s) 50, 218, 296, 418, 460, 469, 534, 677, 841
NlaIV GGNNCC 3 cut(s) 492, 536, 954
NmuCI GTSAC 1 cut(s) 245
PagI TCATGA 1 cut(s) 673
PctI GAATGC 1 cut(s) 63
PdmI GAANNNNTTC 3 cut(s) 323, 669, 946
PfeI GAWTC 3 cut(s) 299, 393, 436
PkrI GCNGC 3 cut(s) 274, 348, 808
PspFI CCCAGC 1 cut(s) 965
PspN4I GGNNCC 3 cut(s) 492, 536, 954
PspPI GGNCC 1 cut(s) 994
PsuI RGATCY 1 cut(s) 827
RsaI GTAC 1 cut(s) 699
RsaNI GTAC 1 cut(s) 698
RseI CAYNNNNRTG 1 cut(s) 575
SalI GTCGAC 1 cut(s) 410
SaqAI TTAA 1 cut(s) 756
SatI GCNGC 3 cut(s) 273, 347, 807
Sau3AI GATC 4 cut(s) 211, 417, 760, 827
Sau96I GGNCC 1 cut(s) 994
SduI GDGCHC 1 cut(s) 445
SfaNI GCATC 1 cut(s) 891
SmiMI CAYNNNNRTG 1 cut(s) 575
Sse9I AATT 6 cut(s) 177, 560, 617, 765, 817, 926
SsiI CCGC 3 cut(s) 251, 347, 584
SspI AATATT 1 cut(s) 796
SspMI CTAG 1 cut(s) 525
StyI CCWWGG 2 cut(s) 46, 169
TaaI ACNGT 4 cut(s) 75, 132, 479, 885
TaqI TCGA 3 cut(s) 114, 188, 411
TasI AATT 6 cut(s) 177, 560, 617, 765, 817, 926
TauI GCSGC 1 cut(s) 349
TfiI GAWTC 3 cut(s) 299, 393, 436
Tru1I TTAA 1 cut(s) 756
Tru9I TTAA 1 cut(s) 756
TscAI CASTG 4 cut(s) 96, 210, 334, 438
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 2 cut(s) 272, 806
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 7 cut(s) 56, 282, 525, 615, 662, 810, 1016
TspRI CASTG 4 cut(s) 96, 210, 334, 438
VneI GTGCAC 1 cut(s) 441
XapI RAATTY 2 cut(s) 817, 926
XcmI CCANNNNNNNNNTGG 1 cut(s) 782
XmiI GTMKAC 1 cut(s) 411
XmnI GAANNNNTTC 3 cut(s) 323, 669, 946
XspI CTAG 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.