Rh2BG262000

phosphoglycerate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001245
Physical Location & Seq
Reverse (-)
27973535 .. 27978778
5244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG262000.1

Sequence Viewer

Length: 1083 bp
ATGTTTGTTCAATTTGGTTCAAAGCACTGTTTGATTTTGATTTTACTGGCTTATTGGATATCTAACAGAATGGTTGCCGCTGCTTTTCGCCACCCCGTTGGGATCATTCAGCTCCATGGTTCTCTTAGTGATGCTGGTTCTGCTAGCAAATGTGGGCATTCGTCTTTCAGATTTATCTCCAAGAATTTTGCAGTTGATGTTGCTTTGCTTAGAAAAGGACATTGTAGCTATAGACAGGGTCAACAGCATGTAGTTCGGGCATTATCTTCTCAGGCTCAAACTACTTGTCCAAGTTCATCCAGCTCCCATGTTGAGAGTGCTTTGATATTAATTCGTCATGGCGAATCTATGTGGAATGAGAAGAACTTGTTCACTGGTTGTGTTGATGTGCCTTTAACAAAGAGAGGTGTAGATGAAGCAATAGAAGGTGGTAAGAGAATTAGCAACATCCCTGTAGATATGATTTATACATCTTCGCTGATTCGTGCACAGATGACAGCCATGCTTACCATGACCCAACACCACTGCAAGAAGGTTCCAATCATAATGCACAACGAGAATCGACAGGCAAAGTCATGGAGTCAAATCTACAGTGAAGATACTGAGAAGCAATCAATTCCAGTTATAACTGCTTGGCAATTGAATGAAAGAATGTATGGTGAATTACAGGGTCTCAATAAGCTAGAGACAGCTGAAAGATATGGAAAGGAACAAGTGCATGAGTGGCGTAGGAGTTACAATGGTCCTCCTCCCAATGGTGAGAGCTTGGAAATGTGTTCCCATAGAGCTGTAGCTTATTTTAAAGACCATATTCAACCACAACTACAATCTGGAAGGCATGTGATGGTTGCTGCCCATGGGAATTCATTAAGGTCTATAATCATGTATCTCGAGAATTTAACTTCTCTAGAGGTTGTTAACTTAGAATTACCAACTGGGCTACCACTGCTTTATATCTATAAGGAGGGGAAATTTATGAGGAGGGGAAGTCCGGTTGGACCTACAGAAGCTGGTGTTTATGCTTACACTGAGCAATTAATAGTTCATGGCACTTGCCAAGCCAGCTCTCATAAGCCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko05230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map05230
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

360

Amino Acids

40.29

Weight (kDa)

9.03

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 108 - 175 9.4e-17 Histidine phosphatase superfamily (branch 1)
His_Phos_1 PF00300 203 - 310 1.2e-13 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 626
AciI CCGC 1 cut(s) 78
AclWI GGATC 1 cut(s) 110
AcsI RAATTY 4 cut(s) 184, 862, 895, 971
AfiI CCNNNNNNNGG 1 cut(s) 755
AgsI TTSAA 4 cut(s) 11, 21, 643, 815
AjnI CCWGG 1 cut(s) 1075
Alw21I GWGCWC 1 cut(s) 490
Alw26I GTCTC 2 cut(s) 677, 680
Alw44I GTGCAC 1 cut(s) 486
AlwI GGATC 1 cut(s) 110
AlwNI CAGNNNCTG 1 cut(s) 1010
Ama87I CYCGRG 1 cut(s) 890
ApaLI GTGCAC 1 cut(s) 486
ApeKI GCWGC 2 cut(s) 80, 851
ApoI RAATTY 4 cut(s) 184, 862, 895, 971
ArsI GACNNNNNNTTYG 2 cut(s) 271, 303
AseI ATTAAT 2 cut(s) 329, 1037
Asp700I GAANNNNTTC 1 cut(s) 368
AspS9I GGNCC 2 cut(s) 743, 998
AsuHPI GGTGA 2 cut(s) 671, 770
AsuNHI GCTAGC 1 cut(s) 143
AvaI CYCGRG 1 cut(s) 890
AvaII GGWCC 2 cut(s) 743, 998
BaeGI GKGCMC 1 cut(s) 490
Bbv12I GWGCWC 1 cut(s) 490
BbvI GCAGC 2 cut(s) 67, 838
BccI CCATC 1 cut(s) 838
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BciT130I CCWGG 1 cut(s) 1077
BcoDI GTCTC 2 cut(s) 677, 680
BfaI CTAG 3 cut(s) 144, 683, 908
BfmI CTRYAG 5 cut(s) 229, 453, 589, 789, 1002
BisI GCNGC 3 cut(s) 78, 81, 852
BlsI GCNGC 3 cut(s) 79, 82, 853
Bme1390I CCNGG 1 cut(s) 1077
Bme18I GGWCC 2 cut(s) 743, 998
BmeT110I CYCGRG 1 cut(s) 890
BmgT120I GGNCC 2 cut(s) 743, 998
BmiI GGNNCC 1 cut(s) 537
BmrFI CCNGG 1 cut(s) 1077
BmrI ACTGGG 1 cut(s) 945
BmsI GCATC 1 cut(s) 121
BmtI GCTAGC 1 cut(s) 147
BmuI ACTGGG 1 cut(s) 945
BsaI GGTCTC 1 cut(s) 677
BsaJI CCNNGG 2 cut(s) 115, 856
BsaWI WCCGGW 1 cut(s) 991
BsaXI ACNNNNNCTCC 2 cut(s) 973, 1003
Bsc4I CCNNNNNNNGG 1 cut(s) 755
Bse1I ACTGG 4 cut(s) 51, 379, 620, 940
BseBI CCWGG 1 cut(s) 1077
BseDI CCNNGG 2 cut(s) 115, 856
BseGI GGATG 2 cut(s) 296, 447
BseLI CCNNNNNNNGG 1 cut(s) 755
BseMII CTCAG 3 cut(s) 284, 594, 1020
BseNI ACTGG 4 cut(s) 51, 379, 620, 940
BseRI GAGGAG 2 cut(s) 738, 994
BseSI GKGCMC 1 cut(s) 490
BseXI GCAGC 2 cut(s) 67, 838
BsiHKAI GWGCWC 1 cut(s) 490
BsiHKCI CYCGRG 1 cut(s) 890
BsiSI CCGG 1 cut(s) 992
BslI CCNNNNNNNGG 1 cut(s) 755
BsmAI GTCTC 2 cut(s) 677, 680
BsmI GAATGC 1 cut(s) 157
Bso31I GGTCTC 1 cut(s) 677
BsoBI CYCGRG 1 cut(s) 890
Bsp1286I GDGCHC 1 cut(s) 490
Bsp143I GATC 1 cut(s) 102
Bsp19I CCATGG 2 cut(s) 115, 856
BspACI CCGC 1 cut(s) 78
BspCNI CTCAG 3 cut(s) 283, 595, 1021
BspLI GGNNCC 1 cut(s) 537
BspOI GCTAGC 1 cut(s) 147
BspPI GGATC 1 cut(s) 110
BspTNI GGTCTC 1 cut(s) 677
BsrI ACTGG 4 cut(s) 51, 379, 620, 940
BssECI CCNNGG 2 cut(s) 115, 856
BssMI GATC 1 cut(s) 102
BssT1I CCWWGG 2 cut(s) 115, 856
Bst2UI CCWGG 1 cut(s) 1077
Bst4CI ACNGT 2 cut(s) 29, 593
BstC8I GCNNGC 2 cut(s) 145, 1063
BstDEI CTNAG 6 cut(s) 125, 209, 270, 603, 922, 1029
BstDSI CCRYGG 2 cut(s) 115, 856
BstF5I GGATG 2 cut(s) 296, 447
BstKTI GATC 1 cut(s) 105
BstMAI GTCTC 2 cut(s) 677, 680
BstMBI GATC 1 cut(s) 102
BstMWI GCNNNNNNNGC 4 cut(s) 140, 724, 946, 1062
BstNI CCWGG 1 cut(s) 1077
BstNSI RCATGY 2 cut(s) 251, 842
BstSCI CCNGG 1 cut(s) 1075
BstSFI CTRYAG 5 cut(s) 229, 453, 589, 789, 1002
BstSLI GKGCMC 1 cut(s) 490
BstV1I GCAGC 2 cut(s) 67, 838
BstXI CCANNNNNNTGG 1 cut(s) 98
BtgI CCRYGG 2 cut(s) 115, 856
BtsCI GGATG 2 cut(s) 296, 447
BtsI GCAGTG 2 cut(s) 523, 944
BtsIMutI CAGTG 6 cut(s) 25, 372, 523, 598, 944, 1026
Cac8I GCNNGC 2 cut(s) 145, 1063
CaiI CAGNNNCTG 1 cut(s) 1010
Cfr13I GGNCC 2 cut(s) 743, 998
DdeI CTNAG 6 cut(s) 125, 209, 270, 603, 922, 1029
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
DraI TTTAAA 1 cut(s) 802
Eco130I CCWWGG 2 cut(s) 115, 856
Eco31I GGTCTC 1 cut(s) 677
Eco32I GATATC 1 cut(s) 60
Eco47I GGWCC 2 cut(s) 743, 998
Eco88I CYCGRG 1 cut(s) 890
EcoRI GAATTC 1 cut(s) 862
EcoRII CCWGG 1 cut(s) 1075
EcoRV GATATC 1 cut(s) 60
EcoT14I CCWWGG 2 cut(s) 115, 856
ErhI CCWWGG 2 cut(s) 115, 856
Fnu4HI GCNGC 3 cut(s) 78, 81, 852
FokI GGATG 2 cut(s) 283, 434
Fsp4HI GCNGC 3 cut(s) 78, 81, 852
FspBI CTAG 3 cut(s) 144, 683, 908
GluI GCNGC 3 cut(s) 78, 81, 852
HapII CCGG 1 cut(s) 992
HincII GTYRAC 2 cut(s) 242, 919
HindII GTYRAC 2 cut(s) 242, 919
HinfI GANTC 4 cut(s) 344, 481, 559, 580
HpaI GTTAAC 1 cut(s) 919
HpaII CCGG 1 cut(s) 992
HphI GGTGA 2 cut(s) 671, 770
Hpy166II GTNNAC 4 cut(s) 242, 372, 488, 919
Hpy188I TCNGA 1 cut(s) 170
Hpy188III TCNNGA 4 cut(s) 831, 890, 892, 908
Hpy8I GTNNAC 4 cut(s) 242, 372, 488, 919
HpyAV CCTTC 3 cut(s) 419, 526, 828
HpyCH4III ACNGT 2 cut(s) 29, 593
HpyCH4V TGCA 5 cut(s) 191, 488, 528, 550, 718
HpyF10VI GCNNNNNNNGC 4 cut(s) 140, 724, 946, 1062
HpyF3I CTNAG 6 cut(s) 125, 209, 270, 603, 922, 1029
KspAI GTTAAC 1 cut(s) 919
Kzo9I GATC 1 cut(s) 102
LmnI GCTCC 2 cut(s) 117, 308
Lsp1109I GCAGC 2 cut(s) 67, 838
LweI GCATC 1 cut(s) 121
MaeI CTAG 3 cut(s) 144, 683, 908
MaeIII GTNAC 1 cut(s) 734
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MboII GAAGA 4 cut(s) 258, 373, 465, 608
MfeI CAATTG 1 cut(s) 638
MhlI GDGCHC 1 cut(s) 490
MlyI GAGTC 1 cut(s) 589
MmeI TCCRAC 1 cut(s) 976
MnlI CCTC 7 cut(s) 398, 756, 759, 904, 958, 972, 975
MroXI GAANNNNTTC 1 cut(s) 368
MseI TTAA 7 cut(s) 329, 395, 801, 869, 899, 918, 1037
MspA1I CMGCKG 2 cut(s) 80, 692
MspI CCGG 1 cut(s) 992
MspR9I CCNGG 1 cut(s) 1077
MunI CAATTG 1 cut(s) 638
Mva1269I GAATGC 1 cut(s) 157
MvaI CCWGG 1 cut(s) 1077
MwoI GCNNNNNNNGC 4 cut(s) 140, 724, 946, 1062
NcoI CCATGG 2 cut(s) 115, 856
NdeII GATC 1 cut(s) 102
NheI GCTAGC 1 cut(s) 143
NlaIV GGNNCC 1 cut(s) 537
NspI RCATGY 2 cut(s) 251, 842
PaeR7I CTCGAG 1 cut(s) 890
PctI GAATGC 1 cut(s) 157
PdmI GAANNNNTTC 1 cut(s) 368
PfeI GAWTC 3 cut(s) 344, 481, 559
PflFI GACNNNGTC 1 cut(s) 237
PkrI GCNGC 3 cut(s) 79, 82, 853
PleI GAGTC 1 cut(s) 588
PpsI GAGTC 1 cut(s) 588
PshBI ATTAAT 2 cut(s) 329, 1037
PsiI TTATAA 1 cut(s) 626
Psp6I CCWGG 1 cut(s) 1075
PspGI CCWGG 1 cut(s) 1075
PspN4I GGNNCC 1 cut(s) 537
PspPI GGNCC 2 cut(s) 743, 998
PstNI CAGNNNCTG 1 cut(s) 1010
PsyI GACNNNGTC 1 cut(s) 237
PvuII CAGCTG 1 cut(s) 692
SaqAI TTAA 7 cut(s) 329, 395, 801, 869, 899, 918, 1037
SatI GCNGC 3 cut(s) 78, 81, 852
Sau3AI GATC 1 cut(s) 102
Sau96I GGNCC 2 cut(s) 743, 998
SchI GAGTC 1 cut(s) 589
ScrFI CCNGG 1 cut(s) 1077
SduI GDGCHC 1 cut(s) 490
SfaNI GCATC 1 cut(s) 121
SfcI CTRYAG 5 cut(s) 229, 453, 589, 789, 1002
Sfr274I CTCGAG 1 cut(s) 890
SinI GGWCC 2 cut(s) 743, 998
SlaI CTCGAG 1 cut(s) 890
SmlI CTYRAG 1 cut(s) 890
SmoI CTYRAG 1 cut(s) 890
SsiI CCGC 1 cut(s) 78
SspMI CTAG 3 cut(s) 144, 683, 908
StyD4I CCNGG 1 cut(s) 1075
StyI CCWWGG 2 cut(s) 115, 856
TaaI ACNGT 2 cut(s) 29, 593
TaqI TCGA 2 cut(s) 562, 891
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 3 cut(s) 344, 481, 559
Tru1I TTAA 7 cut(s) 329, 395, 801, 869, 899, 918, 1037
Tru9I TTAA 7 cut(s) 329, 395, 801, 869, 899, 918, 1037
TscAI CASTG 6 cut(s) 32, 379, 530, 598, 951, 1033
TseI GCWGC 2 cut(s) 80, 851
TspDTI ATGAA 5 cut(s) 285, 429, 660, 855, 1034
TspRI CASTG 6 cut(s) 32, 379, 530, 598, 951, 1033
Tth111I GACNNNGTC 1 cut(s) 237
VneI GTGCAC 1 cut(s) 486
VpaK11BI GGWCC 2 cut(s) 743, 998
VspI ATTAAT 2 cut(s) 329, 1037
XapI RAATTY 4 cut(s) 184, 862, 895, 971
XbaI TCTAGA 1 cut(s) 907
XceI RCATGY 2 cut(s) 251, 842
XhoI CTCGAG 1 cut(s) 890
XmnI GAANNNNTTC 1 cut(s) 368
XspI CTAG 3 cut(s) 144, 683, 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.