Prupe.1G512500_v2.0.a1

Phosphoglycerate mutase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001245
Physical Location & Seq
Forward (+)
42187890 .. 42192709
4820 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G512500.3

Sequence Viewer

Length: 1038 bp
ATGGCTGCTGCTGTATTTAACCAAAGCATTGGGGCTTCTCAGTCCCTTGGGCATTTTAATACCTCCGGCCTGCATCAAGAGTTTGGGAAAGGTTCAGTGAGATTGATTTCAAAGGCTTTTGAGGTTGATGTTGGACTGTCAAAAAAAGGATGCTATAACTCCAGTCAGAGACACCTTAGTATAATTCGAGCCTCGACTTCCCAGACTTCATTGATCGATATAGTTTCATCCCCCTCACATAACAAATCCAATGATTCTCGGAAGAAATCTGGTGAAGCAGCTCTGATTTTGATTAGGCATGGCGAGTCATTGTGGAACGAAAAGAACTTGTTCACAGGCTGTGTTGATGTCCCTCTGACCAAGAAGGGTGTGGAAGAGGCAATCGAAGCTGGCAAGAGAATCAGCAACATACCTATCGACATGATCTATACATCTGCACTGATTCGTGCTCAGATGACTGCCATGCTTGCCATGACACAGCACCGTCGTAAGAAGGTGCCAGTTATAATGCATAATGAGAGTGAACAAGCTACGGCATGGAGTCAGATTTTTAGTGAAGACACAAAAAAGCAATCCATTCCTGTTGTAGCAGATTGGCGGTTGAATGAAAGAATGTATGGGGAATTACAGGGTCTCAATAAACAGGAAACAGCAGATAGATATGGGAAGGAACAAGTTCATGAGTGGCGTCGGAGTTATGACGTACCCCCTCCTAATGGCGAGAGTTTGGAAATGTGTGCTCAAAGAGCTGTTGCTTATTTCAAAGATCAAATTGAACCCCAACTTTTAGCTGGAAAGAATGTGATGATTGCTGCCCATGGGAATTCATTGAGATCCATAATAATGTATCTTGACAAACTAACTTCTCAAGAGGTTATTAGTTTAGAACTATCAACTGGAATACCCATGCTTTACATTTCCAAAGAGGGGAAATTCATTAGGAGGGGAAGTCCTGCCGGACCTGCTGAGGCTGGGGTTTATGCCTACACCAAGAAATTGGCTCTTTACAGGCAGAAGTTAGATGAGATGGTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko05230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map05230
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

346

Amino Acids

38.43

Weight (kDa)

9.22

Isoelectric Point (pI)

46.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 506
Acc36I ACCTGC 1 cut(s) 970
AccB1I GGYRCC 1 cut(s) 496
AciI CCGC 1 cut(s) 598
AclWI GGATC 1 cut(s) 828
AcsI RAATTY 2 cut(s) 823, 932
AcyI GRCGYC 1 cut(s) 688
AfaI GTAC 1 cut(s) 705
AfiI CCNNNNNNNGG 2 cut(s) 716, 927
AgsI TTSAA 4 cut(s) 111, 604, 763, 776
AluBI AGCT 5 cut(s) 281, 389, 530, 749, 791
AluI AGCT 5 cut(s) 281, 389, 530, 749, 791
Alw21I GWGCWC 2 cut(s) 451, 742
Alw26I GTCTC 2 cut(s) 163, 638
AlwI GGATC 1 cut(s) 828
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 4 cut(s) 5, 8, 278, 812
ApoI RAATTY 2 cut(s) 823, 932
Asp700I GAANNNNTTC 2 cut(s) 329, 675
AspS9I GGNCC 1 cut(s) 959
AsuHPI GGTGA 1 cut(s) 284
AvaII GGWCC 1 cut(s) 959
BanI GGYRCC 1 cut(s) 496
BbsI GAAGAC 1 cut(s) 564
Bbv12I GWGCWC 2 cut(s) 451, 742
BbvCI CCTCAGC 1 cut(s) 966
BbvI GCAGC 2 cut(s) 290, 799
BccI CCATC 1 cut(s) 1021
BceAI ACGGC 1 cut(s) 549
BcoDI GTCTC 2 cut(s) 163, 638
BfuAI ACCTGC 1 cut(s) 970
BisI GCNGC 4 cut(s) 6, 9, 279, 813
BlsI GCNGC 4 cut(s) 7, 10, 280, 814
Bme18I GGWCC 1 cut(s) 959
BmgT120I GGNCC 1 cut(s) 959
BmiI GGNNCC 1 cut(s) 498
BmsI GCATC 2 cut(s) 82, 140
BpiI GAAGAC 1 cut(s) 564
BpmI CTGGAG 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 966
BpuEI CTTGAG 1 cut(s) 852
Bsa29I ATCGAT 1 cut(s) 216
BsaHI GRCGYC 1 cut(s) 688
BsaI GGTCTC 1 cut(s) 638
BsaJI CCNNGG 2 cut(s) 46, 817
BsaXI ACNNNNNCTCC 2 cut(s) 934, 964
Bsc4I CCNNNNNNNGG 2 cut(s) 716, 927
Bse1I ACTGG 3 cut(s) 162, 500, 901
BseCI ATCGAT 1 cut(s) 216
BseDI CCNNGG 2 cut(s) 46, 817
BseGI GGATG 2 cut(s) 155, 227
BseLI CCNNNNNNNGG 2 cut(s) 716, 927
BseMII CTCAG 3 cut(s) 53, 464, 957
BseNI ACTGG 3 cut(s) 162, 500, 901
BseXI GCAGC 2 cut(s) 290, 799
BseYI CCCAGC 1 cut(s) 971
BsgI GTGCAG 1 cut(s) 420
BshFI GGCC 1 cut(s) 69
BshNI GGYRCC 1 cut(s) 496
BshVI ATCGAT 1 cut(s) 216
BsiHKAI GWGCWC 2 cut(s) 451, 742
BsiSI CCGG 2 cut(s) 66, 957
BslFI GGGAC 2 cut(s) 28, 335
BslI CCNNNNNNNGG 2 cut(s) 716, 927
BsmAI GTCTC 2 cut(s) 163, 638
BsmFI GGGAC 2 cut(s) 28, 335
BsnI GGCC 1 cut(s) 69
Bso31I GGTCTC 1 cut(s) 638
Bsp1286I GDGCHC 2 cut(s) 451, 742
Bsp143I GATC 4 cut(s) 213, 423, 766, 833
Bsp19I CCATGG 1 cut(s) 817
BspACI CCGC 1 cut(s) 598
BspANI GGCC 1 cut(s) 69
BspCNI CTCAG 3 cut(s) 52, 463, 958
BspDI ATCGAT 1 cut(s) 216
BspHI TCATGA 1 cut(s) 679
BspLI GGNNCC 1 cut(s) 498
BspMI ACCTGC 1 cut(s) 970
BspPI GGATC 1 cut(s) 828
BspT107I GGYRCC 1 cut(s) 496
BspTNI GGTCTC 1 cut(s) 638
BsrI ACTGG 3 cut(s) 162, 500, 901
BssECI CCNNGG 2 cut(s) 46, 817
BssMI GATC 4 cut(s) 213, 423, 766, 833
BssNI GRCGYC 1 cut(s) 688
BssT1I CCWWGG 2 cut(s) 46, 817
Bst4CI ACNGT 2 cut(s) 138, 485
Bst6I CTCTTC 1 cut(s) 369
BstACI GRCGYC 1 cut(s) 688
BstC8I GCNNGC 3 cut(s) 71, 391, 468
BstDEI CTNAG 4 cut(s) 39, 176, 450, 966
BstDSI CCRYGG 1 cut(s) 817
BstF5I GGATG 2 cut(s) 155, 227
BstKTI GATC 4 cut(s) 216, 426, 769, 836
BstMAI GTCTC 2 cut(s) 163, 638
BstMBI GATC 4 cut(s) 213, 423, 766, 833
BstMWI GCNNNNNNNGC 4 cut(s) 386, 467, 746, 962
BstV1I GCAGC 2 cut(s) 290, 799
BstV2I GAAGAC 1 cut(s) 564
BstX2I RGATCY 1 cut(s) 833
BstXI CCANNNNNNTGG 2 cut(s) 29, 997
BstYI RGATCY 1 cut(s) 833
Bsu15I ATCGAT 1 cut(s) 216
BsuRI GGCC 1 cut(s) 69
BsuTUI ATCGAT 1 cut(s) 216
BtgI CCRYGG 1 cut(s) 817
BtsCI GGATG 2 cut(s) 155, 227
BtsIMutI CAGTG 2 cut(s) 102, 437
BveI ACCTGC 1 cut(s) 970
Cac8I GCNNGC 3 cut(s) 71, 391, 468
CciI TCATGA 1 cut(s) 679
Cfr13I GGNCC 1 cut(s) 959
ClaI ATCGAT 1 cut(s) 216
CseI GACGC 1 cut(s) 677
Csp6I GTAC 1 cut(s) 704
CviAII CATG 8 cut(s) 299, 421, 463, 472, 537, 680, 818, 907
CviQI GTAC 1 cut(s) 704
DdeI CTNAG 4 cut(s) 39, 176, 450, 966
DpnI GATC 4 cut(s) 215, 425, 768, 835
DpnII GATC 4 cut(s) 213, 423, 766, 833
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco130I CCWWGG 2 cut(s) 46, 817
Eco31I GGTCTC 1 cut(s) 638
Eco47I GGWCC 1 cut(s) 959
EcoRI GAATTC 1 cut(s) 823
EcoT14I CCWWGG 2 cut(s) 46, 817
EcoT22I ATGCAT 1 cut(s) 513
ErhI CCWWGG 2 cut(s) 46, 817
FaeI CATG 8 cut(s) 302, 424, 466, 475, 540, 683, 821, 910
FaqI GGGAC 2 cut(s) 28, 335
FatI CATG 8 cut(s) 298, 420, 462, 471, 536, 679, 817, 906
Fnu4HI GCNGC 4 cut(s) 6, 9, 279, 813
FokI GGATG 2 cut(s) 162, 214
Fsp4HI GCNGC 4 cut(s) 6, 9, 279, 813
GluI GCNGC 4 cut(s) 6, 9, 279, 813
GsaI CCCAGC 1 cut(s) 975
GsuI CTGGAG 1 cut(s) 145
HaeIII GGCC 1 cut(s) 69
HapII CCGG 2 cut(s) 66, 957
HgaI GACGC 1 cut(s) 677
Hin1I GRCGYC 1 cut(s) 688
Hin1II CATG 8 cut(s) 302, 424, 466, 475, 540, 683, 821, 910
HinfI GANTC 5 cut(s) 254, 305, 399, 442, 541
HpaII CCGG 2 cut(s) 66, 957
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 2 cut(s) 333, 524
Hpy188I TCNGA 7 cut(s) 168, 261, 285, 357, 453, 546, 693
Hpy188III TCNNGA 4 cut(s) 77, 680, 851, 869
Hpy8I GTNNAC 2 cut(s) 333, 524
Hpy99I CGWCG 2 cut(s) 489, 693
HpyAV CCTTC 3 cut(s) 358, 487, 661
HpyCH4III ACNGT 2 cut(s) 138, 485
HpyCH4IV ACGT 1 cut(s) 702
HpyCH4V TGCA 3 cut(s) 73, 437, 511
HpyF10VI GCNNNNNNNGC 4 cut(s) 386, 467, 746, 962
HpyF3I CTNAG 4 cut(s) 39, 176, 450, 966
HpySE526I ACGT 1 cut(s) 702
Hsp92I GRCGYC 1 cut(s) 688
Hsp92II CATG 8 cut(s) 302, 424, 466, 475, 540, 683, 821, 910
Kzo9I GATC 4 cut(s) 213, 423, 766, 833
Lsp1109I GCAGC 2 cut(s) 290, 799
LweI GCATC 2 cut(s) 82, 140
MaeII ACGT 1 cut(s) 702
MalI GATC 4 cut(s) 215, 425, 768, 835
MboI GATC 4 cut(s) 213, 423, 766, 833
MboII GAAGA 3 cut(s) 274, 386, 569
MflI RGATCY 1 cut(s) 833
MhlI GDGCHC 2 cut(s) 451, 742
MluCI AATT 6 cut(s) 183, 623, 771, 823, 932, 995
MlyI GAGTC 2 cut(s) 314, 550
MmeI TCCRAC 2 cut(s) 112, 671
Mph1103I ATGCAT 1 cut(s) 513
MroXI GAANNNNTTC 2 cut(s) 329, 675
MseI TTAA 2 cut(s) 18, 57
MslI CAYNNNNRTG 1 cut(s) 842
MspI CCGG 2 cut(s) 66, 957
MwoI GCNNNNNNNGC 4 cut(s) 386, 467, 746, 962
NcoI CCATGG 1 cut(s) 817
NdeII GATC 4 cut(s) 213, 423, 766, 833
NlaIII CATG 8 cut(s) 302, 424, 466, 475, 540, 683, 821, 910
NlaIV GGNNCC 1 cut(s) 498
NsiI ATGCAT 1 cut(s) 513
PagI TCATGA 1 cut(s) 679
PdmI GAANNNNTTC 2 cut(s) 329, 675
PfeI GAWTC 3 cut(s) 254, 399, 442
PkrI GCNGC 4 cut(s) 7, 10, 280, 814
PleI GAGTC 2 cut(s) 313, 549
PpsI GAGTC 2 cut(s) 313, 549
PsiI TTATAA 1 cut(s) 506
PspFI CCCAGC 1 cut(s) 971
PspN4I GGNNCC 1 cut(s) 498
PspPI GGNCC 1 cut(s) 959
PsuI RGATCY 1 cut(s) 833
RsaI GTAC 1 cut(s) 705
RsaNI GTAC 1 cut(s) 704
RseI CAYNNNNRTG 1 cut(s) 842
SaqAI TTAA 2 cut(s) 18, 57
SatI GCNGC 4 cut(s) 6, 9, 279, 813
Sau3AI GATC 4 cut(s) 213, 423, 766, 833
Sau96I GGNCC 1 cut(s) 959
SchI GAGTC 2 cut(s) 314, 550
SduI GDGCHC 2 cut(s) 451, 742
SfaNI GCATC 2 cut(s) 82, 140
SinI GGWCC 1 cut(s) 959
SmiMI CAYNNNNRTG 1 cut(s) 842
SmlI CTYRAG 1 cut(s) 867
SmoI CTYRAG 1 cut(s) 867
Sse9I AATT 6 cut(s) 183, 623, 771, 823, 932, 995
SsiI CCGC 1 cut(s) 598
StyI CCWWGG 2 cut(s) 46, 817
TaaI ACNGT 2 cut(s) 138, 485
TaiI ACGT 1 cut(s) 705
TaqI TCGA 5 cut(s) 187, 194, 216, 384, 417
TasI AATT 6 cut(s) 183, 623, 771, 823, 932, 995
TfiI GAWTC 3 cut(s) 254, 399, 442
Tru1I TTAA 2 cut(s) 18, 57
Tru9I TTAA 2 cut(s) 18, 57
TscAI CASTG 2 cut(s) 102, 444
TseI GCWGC 4 cut(s) 5, 8, 278, 812
TspDTI ATGAA 7 cut(s) 198, 216, 621, 668, 816, 925, 1022
TspRI CASTG 2 cut(s) 102, 444
VpaK11BI GGWCC 1 cut(s) 959
XapI RAATTY 2 cut(s) 823, 932
XcmI CCANNNNNNNNNTGG 2 cut(s) 367, 788
XmnI GAANNNNTTC 2 cut(s) 329, 675
Zsp2I ATGCAT 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.