Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001245

Physical Location & Seq

Genomic Coordinates Forward (+)

59208597 .. 59209611

Gene Structure 1015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00041350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTGGGCATTCGTCTTTCGATTTATCTCCAAGAATTTTGCTGTTGATGTTGCTTTGCTTAGGAAAGGACATTGTAGCTATAGACAAGGTCAACGGCATGTAGTTTGTGCATTATCTTCTCGGGCTCAAACTACTTGTCCAAGTTCATCCGGCTCCCATGTTGAGAGTGCTTTGATATTAATTCGTCATGGCGAATCTATGTGGAATGAGAAGAACTTGTTCCTTGGTTGTGTTGATGTGCCTTTGACAAAGAGAGGTGTAGATGAAGCAATAGAAGCTGATGACGCCATGCTTACCATGACCCAACACCACCGCAAGAAGGTTCCAATCATTGTGCACAACGAGAATCGACAGCAAAGTCATGGAGTCAAATCTACGCTAGAGACAAATGAAAGATATGGAAAGGAACAAGAGCATGAGTGGCGTAGGAGTTACAAAAGTCCTCCTCCCAATGGTGAGAGCTTGGAAATGTGTTCCCATAGAGCTGTAGCTTATTTTAAAGACCATATTCAACCACAACTACAATCTGGAAGGCATGTGATGGTTGCTGCCCATGGGAATTCATTAAGGTCTATAATCATGTATCTCGAGAAATTAACTTCTCTAGAGGTTGTTAACTTAGAATTACCAACTGGGCTACCACTGCTTTATATCTATAAGGAGGGGAAATTTATGAGGAGGGAAGTCCAAGTAGGACCTACGGAAGCTGGTGTTTATGCTTATGCGAGAGCTTGGCCCTTTACAAGCAAACGTTGGATGAAAGGTTGTATTGAACCATATGAAAACAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko05230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map05230

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

263

Amino Acids

30.17

Weight (kDa)

9.19

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_Phos_1	PF00300	58 - 95	3e-07	Histidine phosphatase superfamily (branch 1)
His_Phos_1	PF00300	108 - 210	1.5e-08	Histidine phosphatase superfamily (branch 1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22170 AT1G22170 AT1G78050
fragaria_vesca	FvH4_1g21310 FvH4_1g21310 FvH4_1g21310 FvH4_1g21310 FvH4_1g21310 FvH4_5g37930 FvH4_5g37930 FvH4_5g37930 FvH4_5g37930 FvH4_5g37930
malus_domestica	MD01G1025800.v1.1 MD08G1179400.v1.1 MD15G1327600.v1.1 MD15G1364700.v1.1
prunus_persica	Prupe.1G512500_v2.0.a1 Prupe.1G512500_v2.0.a1 Prupe.1G512500_v2.0.a1 Prupe.1G512500_v2.0.a1 Prupe.1G512500_v2.0.a1 Prupe.1G512500_v2.0.a1 Prupe.6G181400_v2.0.a1 Prupe.6G181400_v2.0.a1 Prupe.6G181400_v2.0.a1 Prupe.6G181400_v2.0.a1
pyrus_communis	pycom01g05390 pycom08g15360 pycom15g32710
rosa_chinensis	RchiOBHm_Chr2g0115141 RchiOBHm_Chr7g0239871
rosa_laevigata	RLG00000000723 RLG00000018162
rosa_multiflora	Rmu_sc0000540.1_g000060 Rmu_sc0002784.1_g000017 Rmu_sc0018325.1_g000005
rosa_roxburghii	Rroxscaffold_1G00041350 Rroxscaffold_2G00130620 Rroxscaffold_3G00220740 Rroxscaffold_5G00349730
rosa_rugosa	Rorug02G0194000 Rorug02G0194000 Rorug02G0194000 Rorug07G0330700 Rorug07G0330800
rosa_samantha	Rh2AG252500 Rh2BG262000 Rh2CG257000 Rh2DG260700 Rh7AG484200 Rh7BG457300 Rh7CG501700 Rh7DG469900
rosa_wichuraiana	Rw2G019690 Rw7G040620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	357
AciI	CCGC	1 cut(s)	313
AclI	AACGTT	1 cut(s)	751
AcsI	RAATTY	3 cut(s)	34, 559, 668
AcyI	GRCGYC	1 cut(s)	285
AfiI	CCNNNNNNNGG	2 cut(s)	319, 452
AgsI	TTSAA	2 cut(s)	512, 773
AluBI	AGCT	7 cut(s)	78, 278, 462, 485, 491, 707, 731
AluI	AGCT	7 cut(s)	78, 278, 462, 485, 491, 707, 731
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	1 cut(s)	377
Alw44I	GTGCAC	1 cut(s)	335
Ama87I	CYCGRG	2 cut(s)	120, 587
AoxI	GGCC	1 cut(s)	734
ApaLI	GTGCAC	1 cut(s)	335
ApeKI	GCWGC	1 cut(s)	548
ApoI	RAATTY	3 cut(s)	34, 559, 668
ArsI	GACNNNNNNTTYG	2 cut(s)	121, 153
AseI	ATTAAT	1 cut(s)	179
Asp700I	GAANNNNTTC	1 cut(s)	218
AspS9I	GGNCC	2 cut(s)	695, 735
AsuHPI	GGTGA	1 cut(s)	467
AvaI	CYCGRG	2 cut(s)	120, 587
AvaII	GGWCC	1 cut(s)	695
BaeGI	GKGCMC	1 cut(s)	339
BanII	GRGCYC	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	1 cut(s)	535
BccI	CCATC	1 cut(s)	535
BceAI	ACGGC	1 cut(s)	110
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	2 cut(s)	380, 605
BfmI	CTRYAG	2 cut(s)	79, 486
BisI	GCNGC	1 cut(s)	549
BlsI	GCNGC	1 cut(s)	550
Bme18I	GGWCC	1 cut(s)	695
BmeT110I	CYCGRG	2 cut(s)	120, 587
BmgT120I	GGNCC	2 cut(s)	695, 735
BmiI	GGNNCC	2 cut(s)	154, 324
BmrI	ACTGGG	1 cut(s)	642
BmuI	ACTGGG	1 cut(s)	642
Bpu10I	CCTNAGC	1 cut(s)	59
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	223, 553
Bsc4I	CCNNNNNNNGG	2 cut(s)	319, 452
Bse1I	ACTGG	1 cut(s)	637
BseDI	CCNNGG	2 cut(s)	223, 553
BseGI	GGATG	2 cut(s)	146, 762
BseLI	CCNNNNNNNGG	2 cut(s)	319, 452
BseNI	ACTGG	1 cut(s)	637
BseRI	GAGGAG	2 cut(s)	435, 691
BseSI	GKGCMC	1 cut(s)	339
BseXI	GCAGC	1 cut(s)	535
BshFI	GGCC	1 cut(s)	736
BsiHKAI	GWGCWC	1 cut(s)	339
BsiHKCI	CYCGRG	2 cut(s)	120, 587
BsiSI	CCGG	1 cut(s)	150
BslI	CCNNNNNNNGG	2 cut(s)	319, 452
BsmAI	GTCTC	1 cut(s)	377
BsmI	GAATGC	1 cut(s)	8
BsnI	GGCC	1 cut(s)	736
BsoBI	CYCGRG	2 cut(s)	120, 587
Bsp1286I	GDGCHC	2 cut(s)	127, 339
Bsp19I	CCATGG	1 cut(s)	553
BspACI	CCGC	1 cut(s)	313
BspANI	GGCC	1 cut(s)	736
BspLI	GGNNCC	2 cut(s)	154, 324
BsrI	ACTGG	1 cut(s)	637
BssECI	CCNNGG	2 cut(s)	223, 553
BssNI	GRCGYC	1 cut(s)	285
BssT1I	CCWWGG	2 cut(s)	223, 553
BstACI	GRCGYC	1 cut(s)	285
BstDEI	CTNAG	2 cut(s)	59, 619
BstDSI	CCRYGG	1 cut(s)	553
BstF5I	GGATG	2 cut(s)	146, 762
BstMAI	GTCTC	1 cut(s)	377
BstMWI	GCNNNNNNNGC	4 cut(s)	275, 284, 421, 643
BstNSI	RCATGY	2 cut(s)	101, 539
BstSFI	CTRYAG	2 cut(s)	79, 486
BstSLI	GKGCMC	1 cut(s)	339
BstV1I	GCAGC	1 cut(s)	535
BsuRI	GGCC	1 cut(s)	736
BtgI	CCRYGG	1 cut(s)	553
BtsCI	GGATG	2 cut(s)	146, 762
BtsI	GCAGTG	1 cut(s)	641
BtsIMutI	CAGTG	1 cut(s)	641
Cfr13I	GGNCC	2 cut(s)	695, 735
CseI	GACGC	1 cut(s)	293
DdeI	CTNAG	2 cut(s)	59, 619
DraI	TTTAAA	1 cut(s)	499
DrdI	GACNNNNNNGTC	1 cut(s)	357
DseDI	GACNNNNNNGTC	1 cut(s)	357
Eco130I	CCWWGG	2 cut(s)	223, 553
Eco24I	GRGCYC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	695
Eco88I	CYCGRG	2 cut(s)	120, 587
EcoO109I	RGGNCCY	1 cut(s)	695
EcoRI	GAATTC	1 cut(s)	559
EcoT14I	CCWWGG	2 cut(s)	223, 553
EcoT38I	GRGCYC	1 cut(s)	127
ErhI	CCWWGG	2 cut(s)	223, 553
FauNDI	CATATG	1 cut(s)	778
Fnu4HI	GCNGC	1 cut(s)	549
FokI	GGATG	2 cut(s)	133, 769
FriOI	GRGCYC	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	549
FspBI	CTAG	2 cut(s)	380, 605
GluI	GCNGC	1 cut(s)	549
HaeIII	GGCC	1 cut(s)	736
HapII	CCGG	1 cut(s)	150
HgaI	GACGC	1 cut(s)	293
Hin1I	GRCGYC	1 cut(s)	285
HincII	GTYRAC	2 cut(s)	92, 616
HindII	GTYRAC	2 cut(s)	92, 616
HinfI	GANTC	3 cut(s)	194, 346, 366
HpaI	GTTAAC	1 cut(s)	616
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	3 cut(s)	92, 337, 616
Hpy188III	TCNNGA	4 cut(s)	528, 587, 589, 605
Hpy8I	GTNNAC	3 cut(s)	92, 337, 616
HpyAV	CCTTC	2 cut(s)	313, 525
HpyCH4IV	ACGT	1 cut(s)	751
HpyCH4V	TGCA	2 cut(s)	110, 337
HpyF10VI	GCNNNNNNNGC	4 cut(s)	275, 284, 421, 643
HpyF3I	CTNAG	2 cut(s)	59, 619
HpySE526I	ACGT	1 cut(s)	751
Hsp92I	GRCGYC	1 cut(s)	285
KspAI	GTTAAC	1 cut(s)	616
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	5 cut(s)	163, 513, 618, 693, 772
Lsp1109I	GCAGC	1 cut(s)	535
MaeI	CTAG	2 cut(s)	380, 605
MaeII	ACGT	1 cut(s)	751
MaeIII	GTNAC	1 cut(s)	431
MboII	GAAGA	2 cut(s)	108, 223
MhlI	GDGCHC	2 cut(s)	127, 339
MluCI	AATT	6 cut(s)	34, 180, 559, 593, 623, 668
MlyI	GAGTC	1 cut(s)	375
MmeI	TCCRAC	1 cut(s)	734
MnlI	CCTC	7 cut(s)	248, 453, 456, 601, 655, 669, 672
MroXI	GAANNNNTTC	1 cut(s)	218
MseI	TTAA	5 cut(s)	179, 498, 566, 596, 615
MspI	CCGG	1 cut(s)	150
Mva1269I	GAATGC	1 cut(s)	8
MwoI	GCNNNNNNNGC	4 cut(s)	275, 284, 421, 643
NcoI	CCATGG	1 cut(s)	553
NdeI	CATATG	1 cut(s)	778
NlaIV	GGNNCC	2 cut(s)	154, 324
NspI	RCATGY	2 cut(s)	101, 539
PaeR7I	CTCGAG	1 cut(s)	587
PctI	GAATGC	1 cut(s)	8
PdmI	GAANNNNTTC	1 cut(s)	218
PfeI	GAWTC	2 cut(s)	194, 346
PflFI	GACNNNGTC	1 cut(s)	87
PkrI	GCNGC	1 cut(s)	550
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
PpuMI	RGGWCCY	1 cut(s)	695
PshBI	ATTAAT	1 cut(s)	179
Psp1406I	AACGTT	1 cut(s)	751
Psp5II	RGGWCCY	1 cut(s)	695
PspN4I	GGNNCC	2 cut(s)	154, 324
PspPI	GGNCC	2 cut(s)	695, 735
PspPPI	RGGWCCY	1 cut(s)	695
PsyI	GACNNNGTC	1 cut(s)	87
SaqAI	TTAA	5 cut(s)	179, 498, 566, 596, 615
SatI	GCNGC	1 cut(s)	549
Sau96I	GGNCC	2 cut(s)	695, 735
SchI	GAGTC	1 cut(s)	375
SduI	GDGCHC	2 cut(s)	127, 339
SfcI	CTRYAG	2 cut(s)	79, 486
Sfr274I	CTCGAG	1 cut(s)	587
SinI	GGWCC	1 cut(s)	695
SlaI	CTCGAG	1 cut(s)	587
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
Sse9I	AATT	6 cut(s)	34, 180, 559, 593, 623, 668
SsiI	CCGC	1 cut(s)	313
SspMI	CTAG	2 cut(s)	380, 605
StyI	CCWWGG	2 cut(s)	223, 553
TaiI	ACGT	1 cut(s)	754
TaqI	TCGA	3 cut(s)	19, 349, 588
TasI	AATT	6 cut(s)	34, 180, 559, 593, 623, 668
TfiI	GAWTC	2 cut(s)	194, 346
Tru1I	TTAA	5 cut(s)	179, 498, 566, 596, 615
Tru9I	TTAA	5 cut(s)	179, 498, 566, 596, 615
TscAI	CASTG	1 cut(s)	648
TseI	GCWGC	1 cut(s)	548
TspDTI	ATGAA	5 cut(s)	135, 279, 405, 552, 773
TspGWI	ACGGA	1 cut(s)	716
TspRI	CASTG	1 cut(s)	648
Tth111I	GACNNNGTC	1 cut(s)	87
VneI	GTGCAC	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	695
VspI	ATTAAT	1 cut(s)	179
XapI	RAATTY	3 cut(s)	34, 559, 668
XbaI	TCTAGA	1 cut(s)	604
XceI	RCATGY	2 cut(s)	101, 539
XhoI	CTCGAG	1 cut(s)	587
XmnI	GAANNNNTTC	1 cut(s)	218
XspI	CTAG	2 cut(s)	380, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.