Rroxscaffold_5G00349730

phosphoglycerate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001245
Physical Location & Seq
Reverse (-)
22878239 .. 22884393
6155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00349730.1

Sequence Viewer

Length: 594 bp
ATGTGTTCCCATAGAGCTGTAGCTTATTTTAAAGACCATATTCAACCACAACTACAATACGGAAGGCATGTGATGGTTGCTGCCCATGGGAATTCATTAAGGTCTATAATCATGTATCTCGAGAAATTAACTTCTCTAGAGGTTGTTAACTTAGAATTACCAACTGGGCTACCACTGCTTTATATCTATAAGGAGGGGAAATTTATGAGGAGGAAGTCCGGTAGGACCTGCGAAGCGATGAAAGGACATTGTAGCTATAGACAGGGTCAACGACATGTAGTTTGTGCATTATCTTCTCGGGCTCAAACTACTTGTCCAAGTTCATCCAGCTCCCATGTTGAGAGTGCTTTGATATTAATTCGTCATGGCGAATCTATGTGGAATGAGAAGAACTTGTACACTAGTTGTGTTGATGTGCCTTTATCAAAGAGAGCTGTAGATGAAGCAATAGAAGCTGATGACAGCCATGCTTACCATGACCCAACACCACTGCAAGAAGGTTCCAATCATTATGCACAACGAGAATCGACGAGGCAAAGTCATGGAGTCAAATCTACGGTGAAGATACGGAGAAGCAATCAATTCCAGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko05230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map05230
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

197

Amino Acids

22.33

Weight (kDa)

9.17

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 592
Acc36I ACCTGC 1 cut(s) 236
AcsI RAATTY 2 cut(s) 91, 200
AfaI GTAC 1 cut(s) 398
AflIII ACRYGT 1 cut(s) 274
AgsI TTSAA 1 cut(s) 44
AhlI ACTAGT 1 cut(s) 401
AluBI AGCT 6 cut(s) 17, 23, 255, 330, 434, 455
AluI AGCT 6 cut(s) 17, 23, 255, 330, 434, 455
Ama87I CYCGRG 2 cut(s) 119, 297
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 2 cut(s) 91, 200
ArsI GACNNNNNNTTYG 4 cut(s) 264, 296, 298, 330
AseI ATTAAT 1 cut(s) 356
AspS9I GGNCC 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 571
AvaI CYCGRG 2 cut(s) 119, 297
AvaII GGWCC 1 cut(s) 225
BanII GRGCYC 1 cut(s) 304
BarI GAAGNNNNNNTAC 2 cut(s) 380, 412
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 67
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 2 cut(s) 137, 402
BfmI CTRYAG 3 cut(s) 18, 256, 435
BfuAI ACCTGC 1 cut(s) 236
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 225
BmeT110I CYCGRG 2 cut(s) 119, 297
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 1 cut(s) 502
BmrI ACTGGG 1 cut(s) 174
BmuI ACTGGG 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 85
BsaWI WCCGGW 1 cut(s) 218
Bse1I ACTGG 2 cut(s) 169, 586
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 1 cut(s) 323
BseNI ACTGG 2 cut(s) 169, 586
BseRI GAGGAG 1 cut(s) 223
BseXI GCAGC 1 cut(s) 67
BsiHKCI CYCGRG 2 cut(s) 119, 297
BsiSI CCGG 1 cut(s) 219
BsoBI CYCGRG 2 cut(s) 119, 297
Bsp1286I GDGCHC 1 cut(s) 304
Bsp1407I TGTACA 1 cut(s) 396
Bsp19I CCATGG 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 502
BspMI ACCTGC 1 cut(s) 236
BsrGI TGTACA 1 cut(s) 396
BsrI ACTGG 2 cut(s) 169, 586
BssECI CCNNGG 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 85
Bst4CI ACNGT 1 cut(s) 559
BstAUI TGTACA 1 cut(s) 396
BstDEI CTNAG 1 cut(s) 151
BstDSI CCRYGG 1 cut(s) 85
BstF5I GGATG 1 cut(s) 323
BstMWI GCNNNNNNNGC 2 cut(s) 175, 452
BstNSI RCATGY 2 cut(s) 71, 278
BstSFI CTRYAG 3 cut(s) 18, 256, 435
BstV1I GCAGC 1 cut(s) 67
BtgI CCRYGG 1 cut(s) 85
BtgZI GCGATG 1 cut(s) 251
BtsCI GGATG 1 cut(s) 323
BtsI GCAGTG 2 cut(s) 173, 488
BtsIMutI CAGTG 2 cut(s) 173, 488
BveI ACCTGC 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 225
Csp6I GTAC 1 cut(s) 397
CviAII CATG 9 cut(s) 68, 86, 112, 275, 335, 365, 467, 476, 542
CviJI RGCY 9 cut(s) 17, 23, 169, 255, 302, 330, 434, 455, 465
CviKI_1 RGCY 9 cut(s) 17, 23, 169, 255, 302, 330, 434, 455, 465
CviQI GTAC 1 cut(s) 397
DdeI CTNAG 1 cut(s) 151
DraI TTTAAA 1 cut(s) 31
Eco130I CCWWGG 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 225
Eco88I CYCGRG 2 cut(s) 119, 297
EcoO109I RGGNCCY 1 cut(s) 225
EcoRI GAATTC 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 9 cut(s) 71, 89, 115, 278, 338, 368, 470, 479, 545
FatI CATG 9 cut(s) 67, 85, 111, 274, 334, 364, 466, 475, 541
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 1 cut(s) 310
FriOI GRGCYC 1 cut(s) 304
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 2 cut(s) 137, 402
GluI GCNGC 1 cut(s) 81
HapII CCGG 1 cut(s) 219
Hin1II CATG 9 cut(s) 71, 89, 115, 278, 338, 368, 470, 479, 545
HincII GTYRAC 2 cut(s) 148, 269
HindII GTYRAC 2 cut(s) 148, 269
HinfI GANTC 3 cut(s) 371, 524, 546
HpaI GTTAAC 1 cut(s) 148
HpaII CCGG 1 cut(s) 219
HphI GGTGA 1 cut(s) 571
Hpy166II GTNNAC 3 cut(s) 148, 269, 399
Hpy188III TCNNGA 3 cut(s) 119, 121, 137
Hpy8I GTNNAC 3 cut(s) 148, 269, 399
Hpy99I CGWCG 1 cut(s) 532
HpyAV CCTTC 2 cut(s) 57, 491
HpyCH4III ACNGT 1 cut(s) 559
HpyCH4V TGCA 3 cut(s) 287, 493, 515
HpyF10VI GCNNNNNNNGC 2 cut(s) 175, 452
HpyF3I CTNAG 1 cut(s) 151
Hsp92II CATG 9 cut(s) 71, 89, 115, 278, 338, 368, 470, 479, 545
KspAI GTTAAC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 335
LpnPI CCDG 5 cut(s) 150, 232, 241, 248, 340
Lsp1109I GCAGC 1 cut(s) 67
MaeI CTAG 2 cut(s) 137, 402
MboII GAAGA 3 cut(s) 285, 400, 574
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 6 cut(s) 91, 125, 155, 200, 357, 581
MlyI GAGTC 1 cut(s) 555
MnlI CCTC 5 cut(s) 133, 187, 201, 204, 525
MseI TTAA 5 cut(s) 30, 98, 128, 147, 356
MspI CCGG 1 cut(s) 219
MwoI GCNNNNNNNGC 2 cut(s) 175, 452
NcoI CCATGG 1 cut(s) 85
NlaIII CATG 9 cut(s) 71, 89, 115, 278, 338, 368, 470, 479, 545
NlaIV GGNNCC 1 cut(s) 502
NspI RCATGY 2 cut(s) 71, 278
PaeR7I CTCGAG 1 cut(s) 119
PciI ACATGT 1 cut(s) 274
PfeI GAWTC 2 cut(s) 371, 524
PflFI GACNNNGTC 1 cut(s) 264
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 1 cut(s) 554
PpsI GAGTC 1 cut(s) 554
PpuMI RGGWCCY 1 cut(s) 225
PscI ACATGT 1 cut(s) 274
PshBI ATTAAT 1 cut(s) 356
PsiI TTATAA 1 cut(s) 592
Psp5II RGGWCCY 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 502
PspPI GGNCC 1 cut(s) 225
PspPPI RGGWCCY 1 cut(s) 225
PsyI GACNNNGTC 1 cut(s) 264
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
SaqAI TTAA 5 cut(s) 30, 98, 128, 147, 356
SatI GCNGC 1 cut(s) 81
Sau96I GGNCC 1 cut(s) 225
SchI GAGTC 1 cut(s) 555
SduI GDGCHC 1 cut(s) 304
SfcI CTRYAG 3 cut(s) 18, 256, 435
Sfr274I CTCGAG 1 cut(s) 119
SinI GGWCC 1 cut(s) 225
SlaI CTCGAG 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SpeI ACTAGT 1 cut(s) 401
Sse9I AATT 6 cut(s) 91, 125, 155, 200, 357, 581
SspMI CTAG 2 cut(s) 137, 402
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 1 cut(s) 559
TaqI TCGA 2 cut(s) 120, 527
TasI AATT 6 cut(s) 91, 125, 155, 200, 357, 581
TatI WGTACW 1 cut(s) 396
TfiI GAWTC 2 cut(s) 371, 524
Tru1I TTAA 5 cut(s) 30, 98, 128, 147, 356
Tru9I TTAA 5 cut(s) 30, 98, 128, 147, 356
TscAI CASTG 2 cut(s) 180, 495
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 4 cut(s) 84, 254, 312, 456
TspGWI ACGGA 2 cut(s) 75, 583
TspRI CASTG 2 cut(s) 180, 495
Tth111I GACNNNGTC 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 225
VspI ATTAAT 1 cut(s) 356
XapI RAATTY 2 cut(s) 91, 200
XbaI TCTAGA 1 cut(s) 136
XceI RCATGY 2 cut(s) 71, 278
XhoI CTCGAG 1 cut(s) 119
XspI CTAG 2 cut(s) 137, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.