Rw2G019690

phosphoglycerate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001245
Physical Location & Seq
Reverse (-)
26368710 .. 26372222
3513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G019690.1

Sequence Viewer

Length: 948 bp
ATGGTTGCCACTGCTTTTCACCACCCCGTTGGGATCATTCAGCTCCATGGTTCTCTTAGTGATGCTGGTTCTGCTAGCAAATGTGGGCATTCGTCTTTCAGATTTATCTCCAAGAATTTTGCGTTTCGTGCATTATCTTCTCAGGCTCAAACTACTTGTCCAAGTTCATCCAGCTCCCATGTTGAGAGTGCTTTGATATTAATTCGTCATGGCGAATCTATGTGGAATGAGAAGAACTTGTTCACTGGTTGTGTTGATGTGCCTTTAACAAAGAGAGGTGTAGATGAAGCAATAGAAGCTGGTAAGAGAATTAGCAACATTCCTGTAGATATGATTTATACATCTTCGCTGATTCGTGCACAGATGACAGCCATGCTTACCATGACCCAACACCACTGCAAGAAGGTTCCAATCATTATGCACAACGAAAATCGACAGGCAAAGTCATGGAGTCAAATCTACAGTGAAGATACTGAGAAGCAATCAATTCCAGTTATAACTGCTTGGCAATTGAATGAAAGAATGTATGGTGAATTACAGGGTCTCAATAAGCTAGAGACAGCTGAAAGATATGGAAAGGAACAAGTGCATGAGTGGCGTAGGAGTTACAATGGTCCTCCTCCCAATGGTGAGAGCTTGGAAATGTGTTCCCATAGAGCTGTAGCTTATTTTAAAGACCATATTCAACCACAACTACAATCTGGAAGGCATGTGATGGTTGCTGCCCATGGGAATTCATTAAGGTCTATAATCATGTATCTCGAGAATTTAACTTCTCTAGAGGTTGTTAACTTAGAATTACCAACTGGGCTACCACTGCTTTATATCTATAAGGAGGGGAAATTTATGAGGAGGGGAAGTCCAGTTGGACCTACAGAAGCTGGTGTTTATGCTTATACTGAGAGCTTGGCCCTTTACAAGCAAACGTTGGATGAAAAGTTGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko05230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map05230
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

315

Amino Acids

35.37

Weight (kDa)

8.2

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 65 - 136 7.6e-18 Histidine phosphatase superfamily (branch 1)
His_Phos_1 PF00300 160 - 268 8.6e-14 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 497
AclI AACGTT 1 cut(s) 926
AclWI GGATC 1 cut(s) 41
AcsI RAATTY 4 cut(s) 115, 733, 766, 842
AfiI CCNNNNNNNGG 1 cut(s) 626
AgsI TTSAA 2 cut(s) 514, 686
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 2 cut(s) 548, 551
Alw44I GTGCAC 1 cut(s) 357
AlwI GGATC 1 cut(s) 41
AlwNI CAGNNNCTG 1 cut(s) 881
Ama87I CYCGRG 1 cut(s) 761
AoxI GGCC 1 cut(s) 909
ApaLI GTGCAC 1 cut(s) 357
ApeKI GCWGC 1 cut(s) 722
ApoI RAATTY 4 cut(s) 115, 733, 766, 842
ArsI GACNNNNNNTTYG 2 cut(s) 142, 174
AseI ATTAAT 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 239
AspS9I GGNCC 3 cut(s) 614, 869, 910
AsuHPI GGTGA 3 cut(s) 11, 542, 641
AsuNHI GCTAGC 1 cut(s) 74
AvaI CYCGRG 1 cut(s) 761
AvaII GGWCC 2 cut(s) 614, 869
BaeGI GKGCMC 1 cut(s) 361
Bbv12I GWGCWC 1 cut(s) 361
BbvI GCAGC 1 cut(s) 709
BccI CCATC 1 cut(s) 709
BcoDI GTCTC 2 cut(s) 548, 551
BfaI CTAG 3 cut(s) 75, 554, 779
BfmI CTRYAG 4 cut(s) 324, 460, 660, 873
BisI GCNGC 1 cut(s) 723
BlsI GCNGC 1 cut(s) 724
Bme18I GGWCC 2 cut(s) 614, 869
BmeT110I CYCGRG 1 cut(s) 761
BmgT120I GGNCC 3 cut(s) 614, 869, 910
BmiI GGNNCC 1 cut(s) 408
BmrI ACTGGG 1 cut(s) 816
BmsI GCATC 1 cut(s) 52
BmtI GCTAGC 1 cut(s) 78
BmuI ACTGGG 1 cut(s) 816
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 2 cut(s) 46, 727
BsaXI ACNNNNNCTCC 2 cut(s) 844, 874
Bsc4I CCNNNNNNNGG 1 cut(s) 626
Bse1I ACTGG 4 cut(s) 250, 491, 811, 863
BseDI CCNNGG 2 cut(s) 46, 727
BseGI GGATG 2 cut(s) 167, 937
BseLI CCNNNNNNNGG 1 cut(s) 626
BseMII CTCAG 3 cut(s) 155, 465, 891
BseNI ACTGG 4 cut(s) 250, 491, 811, 863
BseRI GAGGAG 2 cut(s) 609, 865
BseSI GKGCMC 1 cut(s) 361
BseXI GCAGC 1 cut(s) 709
BshFI GGCC 1 cut(s) 911
BsiHKAI GWGCWC 1 cut(s) 361
BsiHKCI CYCGRG 1 cut(s) 761
BslI CCNNNNNNNGG 1 cut(s) 626
BsmAI GTCTC 2 cut(s) 548, 551
BsmI GAATGC 1 cut(s) 88
BsnI GGCC 1 cut(s) 911
Bso31I GGTCTC 1 cut(s) 548
BsoBI CYCGRG 1 cut(s) 761
Bsp1286I GDGCHC 1 cut(s) 361
Bsp143I GATC 1 cut(s) 33
Bsp19I CCATGG 2 cut(s) 46, 727
BspANI GGCC 1 cut(s) 911
BspCNI CTCAG 3 cut(s) 154, 466, 892
BspLI GGNNCC 1 cut(s) 408
BspOI GCTAGC 1 cut(s) 78
BspPI GGATC 1 cut(s) 41
BspTNI GGTCTC 1 cut(s) 548
BsrI ACTGG 4 cut(s) 250, 491, 811, 863
BssECI CCNNGG 2 cut(s) 46, 727
BssMI GATC 1 cut(s) 33
BssT1I CCWWGG 2 cut(s) 46, 727
Bst4CI ACNGT 1 cut(s) 464
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 5 cut(s) 56, 141, 474, 793, 900
BstDSI CCRYGG 2 cut(s) 46, 727
BstF5I GGATG 2 cut(s) 167, 937
BstKTI GATC 1 cut(s) 36
BstMAI GTCTC 2 cut(s) 548, 551
BstMBI GATC 1 cut(s) 33
BstMWI GCNNNNNNNGC 5 cut(s) 71, 128, 296, 595, 817
BstNSI RCATGY 1 cut(s) 713
BstSFI CTRYAG 4 cut(s) 324, 460, 660, 873
BstSLI GKGCMC 1 cut(s) 361
BstV1I GCAGC 1 cut(s) 709
BstXI CCANNNNNNTGG 1 cut(s) 29
BsuRI GGCC 1 cut(s) 911
BtgI CCRYGG 2 cut(s) 46, 727
BtsCI GGATG 2 cut(s) 167, 937
BtsI GCAGTG 3 cut(s) 9, 394, 815
BtsIMutI CAGTG 5 cut(s) 9, 243, 394, 469, 815
Cac8I GCNNGC 1 cut(s) 76
CaiI CAGNNNCTG 1 cut(s) 881
Cfr13I GGNCC 3 cut(s) 614, 869, 910
DdeI CTNAG 5 cut(s) 56, 141, 474, 793, 900
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
DraI TTTAAA 1 cut(s) 673
Eco130I CCWWGG 2 cut(s) 46, 727
Eco31I GGTCTC 1 cut(s) 548
Eco47I GGWCC 2 cut(s) 614, 869
Eco88I CYCGRG 1 cut(s) 761
EcoRI GAATTC 1 cut(s) 733
EcoT14I CCWWGG 2 cut(s) 46, 727
ErhI CCWWGG 2 cut(s) 46, 727
Fnu4HI GCNGC 1 cut(s) 723
FokI GGATG 2 cut(s) 154, 944
Fsp4HI GCNGC 1 cut(s) 723
FspBI CTAG 3 cut(s) 75, 554, 779
GluI GCNGC 1 cut(s) 723
HaeIII GGCC 1 cut(s) 911
HincII GTYRAC 1 cut(s) 790
HindII GTYRAC 1 cut(s) 790
HinfI GANTC 3 cut(s) 215, 352, 451
HpaI GTTAAC 1 cut(s) 790
HphI GGTGA 3 cut(s) 11, 542, 641
Hpy166II GTNNAC 3 cut(s) 243, 359, 790
Hpy188I TCNGA 1 cut(s) 101
Hpy188III TCNNGA 4 cut(s) 702, 761, 763, 779
Hpy8I GTNNAC 3 cut(s) 243, 359, 790
HpyAV CCTTC 2 cut(s) 397, 699
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4IV ACGT 1 cut(s) 926
HpyCH4V TGCA 5 cut(s) 131, 359, 399, 421, 589
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 128, 296, 595, 817
HpyF3I CTNAG 5 cut(s) 56, 141, 474, 793, 900
HpySE526I ACGT 1 cut(s) 926
KspAI GTTAAC 1 cut(s) 790
Kzo9I GATC 1 cut(s) 33
LmnI GCTCC 2 cut(s) 48, 179
Lsp1109I GCAGC 1 cut(s) 709
LweI GCATC 1 cut(s) 52
MaeI CTAG 3 cut(s) 75, 554, 779
MaeII ACGT 1 cut(s) 926
MaeIII GTNAC 1 cut(s) 605
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 4 cut(s) 129, 244, 336, 479
MfeI CAATTG 1 cut(s) 509
MhlI GDGCHC 1 cut(s) 361
MlyI GAGTC 1 cut(s) 460
MmeI TCCRAC 2 cut(s) 847, 909
MnlI CCTC 7 cut(s) 269, 627, 630, 775, 829, 843, 846
MroXI GAANNNNTTC 1 cut(s) 239
MseI TTAA 6 cut(s) 200, 266, 672, 740, 770, 789
MspA1I CMGCKG 1 cut(s) 563
MunI CAATTG 1 cut(s) 509
Mva1269I GAATGC 1 cut(s) 88
MwoI GCNNNNNNNGC 5 cut(s) 71, 128, 296, 595, 817
NcoI CCATGG 2 cut(s) 46, 727
NdeII GATC 1 cut(s) 33
NheI GCTAGC 1 cut(s) 74
NlaIV GGNNCC 1 cut(s) 408
NspI RCATGY 1 cut(s) 713
PaeR7I CTCGAG 1 cut(s) 761
PctI GAATGC 1 cut(s) 88
PdmI GAANNNNTTC 1 cut(s) 239
PfeI GAWTC 2 cut(s) 215, 352
PkrI GCNGC 1 cut(s) 724
PleI GAGTC 1 cut(s) 459
PpsI GAGTC 1 cut(s) 459
PshBI ATTAAT 1 cut(s) 200
PsiI TTATAA 1 cut(s) 497
Psp1406I AACGTT 1 cut(s) 926
PspN4I GGNNCC 1 cut(s) 408
PspPI GGNCC 3 cut(s) 614, 869, 910
PstNI CAGNNNCTG 1 cut(s) 881
PvuII CAGCTG 1 cut(s) 563
SaqAI TTAA 6 cut(s) 200, 266, 672, 740, 770, 789
SatI GCNGC 1 cut(s) 723
Sau3AI GATC 1 cut(s) 33
Sau96I GGNCC 3 cut(s) 614, 869, 910
SchI GAGTC 1 cut(s) 460
SduI GDGCHC 1 cut(s) 361
SfaNI GCATC 1 cut(s) 52
SfcI CTRYAG 4 cut(s) 324, 460, 660, 873
Sfr274I CTCGAG 1 cut(s) 761
SinI GGWCC 2 cut(s) 614, 869
SlaI CTCGAG 1 cut(s) 761
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
SspMI CTAG 3 cut(s) 75, 554, 779
StyI CCWWGG 2 cut(s) 46, 727
TaaI ACNGT 1 cut(s) 464
TaiI ACGT 1 cut(s) 929
TaqI TCGA 2 cut(s) 433, 762
TfiI GAWTC 2 cut(s) 215, 352
Tru1I TTAA 6 cut(s) 200, 266, 672, 740, 770, 789
Tru9I TTAA 6 cut(s) 200, 266, 672, 740, 770, 789
TscAI CASTG 5 cut(s) 16, 250, 401, 469, 822
TseI GCWGC 1 cut(s) 722
TspDTI ATGAA 5 cut(s) 156, 300, 531, 726, 948
TspRI CASTG 5 cut(s) 16, 250, 401, 469, 822
VneI GTGCAC 1 cut(s) 357
VpaK11BI GGWCC 2 cut(s) 614, 869
VspI ATTAAT 1 cut(s) 200
XapI RAATTY 4 cut(s) 115, 733, 766, 842
XbaI TCTAGA 1 cut(s) 778
XceI RCATGY 1 cut(s) 713
XhoI CTCGAG 1 cut(s) 761
XmnI GAANNNNTTC 1 cut(s) 239
XspI CTAG 3 cut(s) 75, 554, 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.