Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001245

Physical Location & Seq

Genomic Coordinates Reverse (-)

27394094 .. 27399066

Gene Structure 4973 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG257000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGTTGCCGCTGCTTTTCGCCACCCCGTTGGGATCATTCAGCTCCATGGTTCTCTTAGTGATGCTGGTTCTGCTAGCAAATGTGGGCATTCTTCTTTCAGATTTATCTCCAAGAATTTTGCAGTTGATGTTGCTTTGCTTGGAAAAGGACATTGTAGCTATAGACAGGGTCAACAGCATGTAGTTCGTGCATTATCTTCTCAGGCTCAAACTACTTGTCCAAGTTCATCCAGCTCCCATGTTGAGAGTGCTTTGATATTAATTCGTCATGGCGAATCTATGTGGAATGAGAAGAACTTGTTCACTGGTTGTGTTGATGTGCCTTTAACAAAGAGAGGTGTAGATGAAGCAATAGAAGCTGGTAAGAGAATTAGCAACATCCCTGTAGATATGATTTATACATCTTCGCTGATTCGTGCACAGATGACAGCCATGCTTACCATGACCCAACACCACTGCAAGAAGGTTCCAATCATTATGCACAACGAGAATCGACAGGCAAAGTCATGGAGTCAAATCTACAGTGAAGATACTGAGAAGCAATCAATTCCAGTTATAACTGCTTGGCAATTGAATGAAAGAATGTATGGTGAATTACAGGGTCTCAATAAGCTAGAGACAGCTGAAAGATATGGAAAGGAACAAGTGCATGAGTGGCGTAGGAGTTACAATAGTCCTCCTCCCAATGGTGAGAGCTTGGAAATGTGTTCCCATAGAGCTGTAGCTTATTTTAAAGACCATATTCAACCACAACTACAATCTGGAAGGCATGTGATGGTTGCTGCCCATGGGAATTCATTAAGGTCTATAATCATGTATCTCGAGAATTTAACTTCTCTAGAGGTTGTTAACTTAGAATTACCAACTGGGCTACCACTGCTTTATATCTATAAGGAGGGGAAATTTATGAGGAGGGGAAGTCCAGTTGGACCTACAGAAGCTGGTGTTTATGCTTATACTGAGGTATGGACTCTCCGCTCCATCTATGTTGTTAAAATGCTCAAACTTTCAGCCAATTGTTTCTACCCTTACCTTATAACATCATGTAATTGCTGTCAAATTCGTTTCACTTACTACTGGGGTTTTGAAATTAATCAGAAAACATACTTAGTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko05230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map05230

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

372

Amino Acids

42.05

Weight (kDa)

8.8

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
His_Phos_1	PF00300	85 - 156	9.9e-18	Histidine phosphatase superfamily (branch 1)
His_Phos_1	PF00300	180 - 287	8.9e-14	Histidine phosphatase superfamily (branch 1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22170 AT1G22170 AT1G78050
fragaria_vesca	FvH4_1g21310 FvH4_1g21310 FvH4_1g21310 FvH4_1g21310 FvH4_1g21310 FvH4_5g37930 FvH4_5g37930 FvH4_5g37930 FvH4_5g37930 FvH4_5g37930
malus_domestica	MD01G1025800.v1.1 MD08G1179400.v1.1 MD15G1327600.v1.1 MD15G1364700.v1.1
prunus_persica	Prupe.1G512500_v2.0.a1 Prupe.1G512500_v2.0.a1 Prupe.1G512500_v2.0.a1 Prupe.1G512500_v2.0.a1 Prupe.1G512500_v2.0.a1 Prupe.1G512500_v2.0.a1 Prupe.6G181400_v2.0.a1 Prupe.6G181400_v2.0.a1 Prupe.6G181400_v2.0.a1 Prupe.6G181400_v2.0.a1
pyrus_communis	pycom01g05390 pycom08g15360 pycom15g32710
rosa_chinensis	RchiOBHm_Chr2g0115141 RchiOBHm_Chr7g0239871
rosa_laevigata	RLG00000000723 RLG00000018162
rosa_multiflora	Rmu_sc0000540.1_g000060 Rmu_sc0002784.1_g000017 Rmu_sc0018325.1_g000005
rosa_roxburghii	Rroxscaffold_1G00041350 Rroxscaffold_2G00130620 Rroxscaffold_3G00220740 Rroxscaffold_5G00349730
rosa_rugosa	Rorug02G0194000 Rorug02G0194000 Rorug02G0194000 Rorug07G0330700 Rorug07G0330800
rosa_samantha	Rh2AG252500 Rh2BG262000 Rh2CG257000 Rh2DG260700 Rh7AG484200 Rh7BG457300 Rh7CG501700 Rh7DG469900
rosa_wichuraiana	Rw2G019690 Rw7G040620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	557, 1037
AccBSI	CCGCTC	1 cut(s)	978
AciI	CCGC	2 cut(s)	9, 976
AclWI	GGATC	1 cut(s)	41
AcsI	RAATTY	5 cut(s)	115, 793, 826, 902, 1059
AfiI	CCNNNNNNNGG	1 cut(s)	686
AgsI	TTSAA	3 cut(s)	574, 746, 1088
Alw21I	GWGCWC	1 cut(s)	421
Alw26I	GTCTC	2 cut(s)	608, 611
Alw44I	GTGCAC	1 cut(s)	417
AlwI	GGATC	1 cut(s)	41
AlwNI	CAGNNNCTG	1 cut(s)	941
Ama87I	CYCGRG	1 cut(s)	821
ApaLI	GTGCAC	1 cut(s)	417
ApeKI	GCWGC	2 cut(s)	11, 782
ApoI	RAATTY	5 cut(s)	115, 793, 826, 902, 1059
ArsI	GACNNNNNNTTYG	2 cut(s)	202, 234
AseI	ATTAAT	2 cut(s)	260, 1092
Asp700I	GAANNNNTTC	1 cut(s)	299
AspS9I	GGNCC	1 cut(s)	929
AsuHPI	GGTGA	2 cut(s)	602, 701
AsuNHI	GCTAGC	1 cut(s)	74
AvaI	CYCGRG	1 cut(s)	821
AvaII	GGWCC	1 cut(s)	929
BaeGI	GKGCMC	1 cut(s)	421
Bbv12I	GWGCWC	1 cut(s)	421
BbvI	GCAGC	1 cut(s)	769
BccI	CCATC	2 cut(s)	769, 989
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BcoDI	GTCTC	2 cut(s)	608, 611
BfaI	CTAG	3 cut(s)	75, 614, 839
BfmI	CTRYAG	5 cut(s)	160, 384, 520, 720, 933
BisI	GCNGC	3 cut(s)	9, 12, 783
BlsI	GCNGC	3 cut(s)	10, 13, 784
Bme18I	GGWCC	1 cut(s)	929
BmeT110I	CYCGRG	1 cut(s)	821
BmgT120I	GGNCC	1 cut(s)	929
BmiI	GGNNCC	1 cut(s)	468
BmrI	ACTGGG	2 cut(s)	876, 1087
BmsI	GCATC	1 cut(s)	52
BmtI	GCTAGC	1 cut(s)	78
BmuI	ACTGGG	2 cut(s)	876, 1087
BsaI	GGTCTC	1 cut(s)	608
BsaJI	CCNNGG	2 cut(s)	46, 787
BsaXI	ACNNNNNCTCC	2 cut(s)	904, 934
Bsc4I	CCNNNNNNNGG	1 cut(s)	686
Bse1I	ACTGG	5 cut(s)	310, 551, 871, 923, 1082
BseDI	CCNNGG	2 cut(s)	46, 787
BseGI	GGATG	2 cut(s)	227, 378
BseLI	CCNNNNNNNGG	1 cut(s)	686
BseMII	CTCAG	3 cut(s)	215, 525, 951
BseNI	ACTGG	5 cut(s)	310, 551, 871, 923, 1082
BseRI	GAGGAG	2 cut(s)	669, 925
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	1 cut(s)	769
BsiHKAI	GWGCWC	1 cut(s)	421
BsiHKCI	CYCGRG	1 cut(s)	821
BslI	CCNNNNNNNGG	1 cut(s)	686
BsmAI	GTCTC	2 cut(s)	608, 611
BsmI	GAATGC	1 cut(s)	88
Bso31I	GGTCTC	1 cut(s)	608
BsoBI	CYCGRG	1 cut(s)	821
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	1 cut(s)	33
Bsp19I	CCATGG	2 cut(s)	46, 787
BspACI	CCGC	2 cut(s)	9, 976
BspCNI	CTCAG	3 cut(s)	214, 526, 952
BspLI	GGNNCC	1 cut(s)	468
BspOI	GCTAGC	1 cut(s)	78
BspPI	GGATC	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	608
BsrBI	CCGCTC	1 cut(s)	978
BsrI	ACTGG	5 cut(s)	310, 551, 871, 923, 1082
BssECI	CCNNGG	2 cut(s)	46, 787
BssMI	GATC	1 cut(s)	33
BssT1I	CCWWGG	2 cut(s)	46, 787
Bst4CI	ACNGT	1 cut(s)	524
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	6 cut(s)	56, 201, 534, 853, 960, 1108
BstDSI	CCRYGG	2 cut(s)	46, 787
BstF5I	GGATG	2 cut(s)	227, 378
BstKTI	GATC	1 cut(s)	36
BstMAI	GTCTC	2 cut(s)	608, 611
BstMBI	GATC	1 cut(s)	33
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 356, 655, 877
BstNSI	RCATGY	2 cut(s)	182, 773
BstSFI	CTRYAG	5 cut(s)	160, 384, 520, 720, 933
BstSLI	GKGCMC	1 cut(s)	421
BstV1I	GCAGC	1 cut(s)	769
BstXI	CCANNNNNNTGG	1 cut(s)	29
BtgI	CCRYGG	2 cut(s)	46, 787
BtsCI	GGATG	2 cut(s)	227, 378
BtsI	GCAGTG	2 cut(s)	454, 875
BtsIMutI	CAGTG	4 cut(s)	303, 454, 529, 875
Cac8I	GCNNGC	1 cut(s)	76
CaiI	CAGNNNCTG	1 cut(s)	941
Cfr13I	GGNCC	1 cut(s)	929
DdeI	CTNAG	6 cut(s)	56, 201, 534, 853, 960, 1108
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
DraI	TTTAAA	1 cut(s)	733
Eco130I	CCWWGG	2 cut(s)	46, 787
Eco31I	GGTCTC	1 cut(s)	608
Eco47I	GGWCC	1 cut(s)	929
Eco88I	CYCGRG	1 cut(s)	821
EcoRI	GAATTC	1 cut(s)	793
EcoT14I	CCWWGG	2 cut(s)	46, 787
ErhI	CCWWGG	2 cut(s)	46, 787
Fnu4HI	GCNGC	3 cut(s)	9, 12, 783
FokI	GGATG	2 cut(s)	214, 365
Fsp4HI	GCNGC	3 cut(s)	9, 12, 783
FspBI	CTAG	3 cut(s)	75, 614, 839
GluI	GCNGC	3 cut(s)	9, 12, 783
HincII	GTYRAC	2 cut(s)	173, 850
HindII	GTYRAC	2 cut(s)	173, 850
HinfI	GANTC	5 cut(s)	275, 412, 490, 511, 970
HpaI	GTTAAC	1 cut(s)	850
HphI	GGTGA	2 cut(s)	602, 701
Hpy166II	GTNNAC	4 cut(s)	173, 303, 419, 850
Hpy188I	TCNGA	2 cut(s)	101, 1098
Hpy188III	TCNNGA	4 cut(s)	762, 821, 823, 839
Hpy8I	GTNNAC	4 cut(s)	173, 303, 419, 850
HpyAV	CCTTC	2 cut(s)	457, 759
HpyCH4III	ACNGT	1 cut(s)	524
HpyCH4V	TGCA	6 cut(s)	122, 191, 419, 459, 481, 649
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 356, 655, 877
HpyF3I	CTNAG	6 cut(s)	56, 201, 534, 853, 960, 1108
KspAI	GTTAAC	1 cut(s)	850
Kzo9I	GATC	1 cut(s)	33
LmnI	GCTCC	3 cut(s)	48, 239, 983
Lsp1109I	GCAGC	1 cut(s)	769
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	3 cut(s)	75, 614, 839
MaeIII	GTNAC	1 cut(s)	665
MalI	GATC	1 cut(s)	35
MbiI	CCGCTC	1 cut(s)	978
MboI	GATC	1 cut(s)	33
MboII	GAAGA	5 cut(s)	84, 189, 304, 396, 539
MfeI	CAATTG	2 cut(s)	569, 1015
MhlI	GDGCHC	1 cut(s)	421
MlyI	GAGTC	2 cut(s)	520, 964
MmeI	TCCRAC	1 cut(s)	907
MnlI	CCTC	8 cut(s)	329, 687, 690, 835, 889, 903, 906, 955
MroXI	GAANNNNTTC	1 cut(s)	299
MseI	TTAA	8 cut(s)	260, 326, 732, 800, 830, 849, 993, 1092
MspA1I	CMGCKG	2 cut(s)	11, 623
MunI	CAATTG	2 cut(s)	569, 1015
Mva1269I	GAATGC	1 cut(s)	88
MwoI	GCNNNNNNNGC	4 cut(s)	71, 356, 655, 877
NcoI	CCATGG	2 cut(s)	46, 787
NdeII	GATC	1 cut(s)	33
NheI	GCTAGC	1 cut(s)	74
NlaIV	GGNNCC	1 cut(s)	468
NspI	RCATGY	2 cut(s)	182, 773
PaeR7I	CTCGAG	1 cut(s)	821
PctI	GAATGC	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	299
PfeI	GAWTC	3 cut(s)	275, 412, 490
PflFI	GACNNNGTC	1 cut(s)	168
PkrI	GCNGC	3 cut(s)	10, 13, 784
PleI	GAGTC	2 cut(s)	519, 964
PpsI	GAGTC	2 cut(s)	519, 964
PshBI	ATTAAT	2 cut(s)	260, 1092
PsiI	TTATAA	2 cut(s)	557, 1037
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	1 cut(s)	929
PstNI	CAGNNNCTG	1 cut(s)	941
PsyI	GACNNNGTC	1 cut(s)	168
PvuII	CAGCTG	1 cut(s)	623
SaqAI	TTAA	8 cut(s)	260, 326, 732, 800, 830, 849, 993, 1092
SatI	GCNGC	3 cut(s)	9, 12, 783
Sau3AI	GATC	1 cut(s)	33
Sau96I	GGNCC	1 cut(s)	929
SchI	GAGTC	2 cut(s)	520, 964
SduI	GDGCHC	1 cut(s)	421
SfaNI	GCATC	1 cut(s)	52
SfcI	CTRYAG	5 cut(s)	160, 384, 520, 720, 933
Sfr274I	CTCGAG	1 cut(s)	821
SinI	GGWCC	1 cut(s)	929
SlaI	CTCGAG	1 cut(s)	821
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
SsiI	CCGC	2 cut(s)	9, 976
SspMI	CTAG	3 cut(s)	75, 614, 839
StyI	CCWWGG	2 cut(s)	46, 787
TaaI	ACNGT	1 cut(s)	524
TaqI	TCGA	2 cut(s)	493, 822
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	3 cut(s)	275, 412, 490
Tru1I	TTAA	8 cut(s)	260, 326, 732, 800, 830, 849, 993, 1092
Tru9I	TTAA	8 cut(s)	260, 326, 732, 800, 830, 849, 993, 1092
TscAI	CASTG	4 cut(s)	310, 461, 529, 882
TseI	GCWGC	2 cut(s)	11, 782
TspDTI	ATGAA	4 cut(s)	216, 360, 591, 786
TspRI	CASTG	4 cut(s)	310, 461, 529, 882
Tth111I	GACNNNGTC	1 cut(s)	168
VneI	GTGCAC	1 cut(s)	417
VpaK11BI	GGWCC	1 cut(s)	929
VspI	ATTAAT	2 cut(s)	260, 1092
XapI	RAATTY	5 cut(s)	115, 793, 826, 902, 1059
XbaI	TCTAGA	1 cut(s)	838
XceI	RCATGY	2 cut(s)	182, 773
XhoI	CTCGAG	1 cut(s)	821
XmnI	GAANNNNTTC	1 cut(s)	299
XspI	CTAG	3 cut(s)	75, 614, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.