Prupe.6G181400_v2.0.a1

phosphoglycerate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0001245
Physical Location & Seq
Forward (+)
18834682 .. 18839534
4853 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G181400.1

Sequence Viewer

Length: 1047 bp
ATGATGATTATAAGGTTGATGATGGAATTACGTCCCAGAATGGTTGCGAATGCTTTCCGCCATCCTGTTGGGGTAATTCAGCTCCATGGTTCTGTTGGTGACAGTGGTTCTATGAGCAAATGTAGGCAGATGTCTTTCAGATTTATCTCCAAAAATTTTGCGGTTGATGTGGGTTTGCTTAGAAAAGGACAATGTGGTTCTAGACAGTGTAAACTGCAAGTAATTCGTGCATCTTCTTCTCAAACTTCAACAACTGATCCAATTTTATCTACCTCAAAAGCTGAAAGTGCTTTAATACTAATTCGTCATGGTGAATCTTTGTGGAATGAGAAGAACTTGTTCACCGGTTGTGTTGATGTGCCTTTAACCAAGAGAGGTGTAGATGAGGCAATAGAAGCCGGTAAGAGAATTAGCAACATCCCTATAGATATGATTTTCACATCTTCGCTGATTCGTGCACAGATGACAGCTATGCTTGCCATGACCCAACACCGCCGAAAGAAGGTACCAATCATTACGCATAACGAGAGTAGACAGGCGAAAACATGGAGTCAAATTTACAGTGGAGATACGAAGAAGCAATCGATTCCAGTTGTAACTGCTTGGCAATTGAACGAAAGAATGTATGGTGAATTACAGGGTCTTAATAAGCTAGAGACAGCTGAAAGATATGGAAAGGAGAAAGTGCATGAGTGGCGTCGGAGTTATGATATTCCTCCCCCAAGCGGTGAGAGCTTGGAAATGTGTTCACAAAGAGCTGTAGCCTACTTTAAAGAACATATTGAACCAAAACTACAATCTGGAAAGAACGTGCTGGTTGCTGCCCATGGGAATTCGTTAAGGTCTATAATCATGTATCTTGAGAGATTAACTTCTCAAGAGGTTATTAGCTTAGAGTTATCAACCGGTGTACCACTGCTTTATATTCATAAGGAGGAAAAGTTTATGAGGAGGGGAAGTCCAGTTGGACCTACAGAACCTGGTGTTTATGCTTATACTAAGAGTTTAGCTCTCTACAGGCAAGAATTGGATAAAAAGTCGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko05230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map05230
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

349

Amino Acids

39.32

Weight (kDa)

9.72

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 11
Acc65I GGTACC 1 cut(s) 505
AccB1I GGYRCC 1 cut(s) 505
AccI GTMKAC 1 cut(s) 532
AciI CCGC 4 cut(s) 58, 161, 493, 726
AclWI GGATC 1 cut(s) 251
AcsI RAATTY 3 cut(s) 154, 555, 832
AcyI GRCGYC 1 cut(s) 697
AfaI GTAC 2 cut(s) 507, 912
AfiI CCNNNNNNNGG 2 cut(s) 502, 725
AgeI ACCGGT 2 cut(s) 344, 905
AgsI TTSAA 3 cut(s) 249, 613, 785
AjnI CCWGG 1 cut(s) 979
AluBI AGCT 9 cut(s) 82, 281, 470, 652, 662, 735, 758, 891, 1010
AluI AGCT 9 cut(s) 82, 281, 470, 652, 662, 735, 758, 891, 1010
Alw21I GWGCWC 1 cut(s) 460
Alw26I GTCTC 1 cut(s) 650
Alw44I GTGCAC 1 cut(s) 456
AlwI GGATC 1 cut(s) 251
AlwNI CAGNNNCTG 1 cut(s) 980
ApaLI GTGCAC 1 cut(s) 456
ApeKI GCWGC 1 cut(s) 821
ApoI RAATTY 3 cut(s) 154, 555, 832
AsiGI ACCGGT 2 cut(s) 344, 905
Asp700I GAANNNNTTC 2 cut(s) 53, 338
Asp718I GGTACC 1 cut(s) 505
AspS9I GGNCC 1 cut(s) 968
AsuHPI GGTGA 5 cut(s) 110, 323, 334, 641, 740
AvaII GGWCC 1 cut(s) 968
BaeGI GKGCMC 1 cut(s) 460
BaeI ACNNNNGTAYC 2 cut(s) 894, 927
BanI GGYRCC 1 cut(s) 505
Bbv12I GWGCWC 1 cut(s) 460
BbvI GCAGC 1 cut(s) 808
BccI CCATC 2 cut(s) 16, 69
BcgI CGANNNNNNTGC 2 cut(s) 206, 240
BciT130I CCWGG 1 cut(s) 981
BcoDI GTCTC 1 cut(s) 650
BfaI CTAG 2 cut(s) 201, 653
BfmI CTRYAG 4 cut(s) 423, 759, 972, 1015
BisI GCNGC 1 cut(s) 822
BlsI GCNGC 1 cut(s) 823
Bme1390I CCNGG 1 cut(s) 981
Bme18I GGWCC 1 cut(s) 968
BmgT120I GGNCC 1 cut(s) 968
BmiI GGNNCC 1 cut(s) 507
BmrFI CCNGG 1 cut(s) 981
BmsI GCATC 1 cut(s) 239
BplI GAGNNNNNCTC 2 cut(s) 994, 1026
BpuEI CTTGAG 2 cut(s) 861, 881
Bsa29I ATCGAT 1 cut(s) 584
BsaHI GRCGYC 1 cut(s) 697
BsaJI CCNNGG 2 cut(s) 85, 826
BsaWI WCCGGW 2 cut(s) 344, 905
BsaXI ACNNNNNCTCC 4 cut(s) 926, 943, 956, 973
Bsc4I CCNNNNNNNGG 2 cut(s) 502, 725
Bse118I RCCGGY 3 cut(s) 344, 398, 905
Bse1I ACTGG 2 cut(s) 590, 962
BseBI CCWGG 1 cut(s) 981
BseCI ATCGAT 1 cut(s) 584
BseDI CCNNGG 2 cut(s) 85, 826
BseGI GGATG 2 cut(s) 61, 417
BseLI CCNNNNNNNGG 2 cut(s) 502, 725
BseNI ACTGG 2 cut(s) 590, 962
BseRI GAGGAG 1 cut(s) 964
BseSI GKGCMC 1 cut(s) 460
BseXI GCAGC 1 cut(s) 808
BshNI GGYRCC 1 cut(s) 505
BshTI ACCGGT 2 cut(s) 344, 905
BshVI ATCGAT 1 cut(s) 584
BsiHKAI GWGCWC 1 cut(s) 460
BsiSI CCGG 3 cut(s) 345, 399, 906
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 502, 725
BsmAI GTCTC 1 cut(s) 650
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 460
Bsp143I GATC 1 cut(s) 256
Bsp19I CCATGG 2 cut(s) 85, 826
BspACI CCGC 4 cut(s) 58, 161, 493, 726
BspDI ATCGAT 1 cut(s) 584
BspLI GGNNCC 1 cut(s) 507
BspPI GGATC 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 505
BsrFI RCCGGY 3 cut(s) 344, 398, 905
BsrI ACTGG 2 cut(s) 590, 962
BssAI RCCGGY 3 cut(s) 344, 398, 905
BssECI CCNNGG 2 cut(s) 85, 826
BssMI GATC 1 cut(s) 256
BssNI GRCGYC 1 cut(s) 697
BssT1I CCWWGG 2 cut(s) 85, 826
Bst2UI CCWGG 1 cut(s) 981
Bst4CI ACNGT 3 cut(s) 104, 207, 563
BstACI GRCGYC 1 cut(s) 697
BstC8I GCNNGC 1 cut(s) 477
BstDEI CTNAG 3 cut(s) 179, 892, 999
BstDSI CCRYGG 2 cut(s) 85, 826
BstF5I GGATG 2 cut(s) 61, 417
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 1 cut(s) 650
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 5 cut(s) 287, 395, 476, 694, 732
BstNI CCWGG 1 cut(s) 981
BstSCI CCNGG 1 cut(s) 979
BstSFI CTRYAG 4 cut(s) 423, 759, 972, 1015
BstSLI GKGCMC 1 cut(s) 460
BstV1I GCAGC 1 cut(s) 808
BstXI CCANNNNNNTGG 1 cut(s) 68
Bsu15I ATCGAT 1 cut(s) 584
BsuTUI ATCGAT 1 cut(s) 584
BtgI CCRYGG 2 cut(s) 85, 826
BtsCI GGATG 2 cut(s) 61, 417
BtsI GCAGTG 1 cut(s) 914
BtsIMutI CAGTG 4 cut(s) 109, 212, 568, 914
Cac8I GCNNGC 1 cut(s) 477
CaiI CAGNNNCTG 1 cut(s) 980
Cfr10I RCCGGY 3 cut(s) 344, 398, 905
Cfr13I GGNCC 1 cut(s) 968
ClaI ATCGAT 1 cut(s) 584
CseI GACGC 1 cut(s) 686
CsiI ACCWGGT 1 cut(s) 979
Csp6I GTAC 2 cut(s) 506, 911
CspAI ACCGGT 2 cut(s) 344, 905
CviAII CATG 7 cut(s) 86, 308, 481, 546, 689, 827, 853
CviQI GTAC 2 cut(s) 506, 911
DdeI CTNAG 3 cut(s) 179, 892, 999
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
DraI TTTAAA 1 cut(s) 772
EciI GGCGGA 1 cut(s) 47
Eco130I CCWWGG 2 cut(s) 85, 826
Eco47I GGWCC 1 cut(s) 968
EcoRI GAATTC 1 cut(s) 832
EcoRII CCWGG 1 cut(s) 979
EcoT14I CCWWGG 2 cut(s) 85, 826
ErhI CCWWGG 2 cut(s) 85, 826
FaeI CATG 7 cut(s) 89, 311, 484, 549, 692, 830, 856
FaqI GGGAC 1 cut(s) 18
FatI CATG 7 cut(s) 85, 307, 480, 545, 688, 826, 852
FblI GTMKAC 1 cut(s) 532
Fnu4HI GCNGC 1 cut(s) 822
FokI GGATG 2 cut(s) 48, 404
Fsp4HI GCNGC 1 cut(s) 822
FspBI CTAG 2 cut(s) 201, 653
GluI GCNGC 1 cut(s) 822
HapII CCGG 3 cut(s) 345, 399, 906
HgaI GACGC 1 cut(s) 686
Hin1I GRCGYC 1 cut(s) 697
Hin1II CATG 7 cut(s) 89, 311, 484, 549, 692, 830, 856
HinfI GANTC 4 cut(s) 314, 451, 550, 586
HpaII CCGG 3 cut(s) 345, 399, 906
HphI GGTGA 5 cut(s) 110, 323, 334, 641, 740
Hpy166II GTNNAC 6 cut(s) 212, 342, 458, 533, 749, 911
Hpy188I TCNGA 2 cut(s) 140, 702
Hpy188III TCNNGA 4 cut(s) 201, 801, 860, 878
Hpy8I GTNNAC 6 cut(s) 212, 342, 458, 533, 749, 911
Hpy99I CGWCG 1 cut(s) 702
HpyAV CCTTC 1 cut(s) 496
HpyCH4III ACNGT 3 cut(s) 104, 207, 563
HpyCH4IV ACGT 2 cut(s) 31, 810
HpyCH4V TGCA 4 cut(s) 217, 230, 458, 688
HpyF10VI GCNNNNNNNGC 5 cut(s) 287, 395, 476, 694, 732
HpyF3I CTNAG 3 cut(s) 179, 892, 999
HpySE526I ACGT 2 cut(s) 31, 810
Hsp92I GRCGYC 1 cut(s) 697
Hsp92II CATG 7 cut(s) 89, 311, 484, 549, 692, 830, 856
KpnI GGTACC 1 cut(s) 509
Kzo9I GATC 1 cut(s) 256
LmnI GCTCC 1 cut(s) 87
Lsp1109I GCAGC 1 cut(s) 808
LweI GCATC 1 cut(s) 239
MabI ACCWGGT 1 cut(s) 979
MaeI CTAG 2 cut(s) 201, 653
MaeII ACGT 2 cut(s) 31, 810
MaeIII GTNAC 2 cut(s) 98, 595
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 5 cut(s) 225, 228, 343, 435, 586
MfeI CAATTG 1 cut(s) 608
MhlI GDGCHC 1 cut(s) 460
MlyI GAGTC 1 cut(s) 559
MmeI TCCRAC 2 cut(s) 680, 946
MnlI CCTC 8 cut(s) 283, 368, 379, 726, 874, 928, 942, 945
MroXI GAANNNNTTC 2 cut(s) 53, 338
MseI TTAA 6 cut(s) 293, 365, 645, 771, 839, 869
MspA1I CMGCKG 1 cut(s) 662
MspI CCGG 3 cut(s) 345, 399, 906
MspR9I CCNGG 1 cut(s) 981
MunI CAATTG 1 cut(s) 608
Mva1269I GAATGC 1 cut(s) 55
MvaI CCWGG 1 cut(s) 981
MwoI GCNNNNNNNGC 5 cut(s) 287, 395, 476, 694, 732
NcoI CCATGG 2 cut(s) 85, 826
NdeII GATC 1 cut(s) 256
NlaIII CATG 7 cut(s) 89, 311, 484, 549, 692, 830, 856
NlaIV GGNNCC 1 cut(s) 507
NmuCI GTSAC 1 cut(s) 98
PctI GAATGC 1 cut(s) 55
PdmI GAANNNNTTC 2 cut(s) 53, 338
PfeI GAWTC 3 cut(s) 314, 451, 586
PinAI ACCGGT 2 cut(s) 344, 905
PkrI GCNGC 1 cut(s) 823
PleI GAGTC 1 cut(s) 558
PpsI GAGTC 1 cut(s) 558
PsiI TTATAA 1 cut(s) 11
Psp6I CCWGG 1 cut(s) 979
PspGI CCWGG 1 cut(s) 979
PspN4I GGNNCC 1 cut(s) 507
PspPI GGNCC 1 cut(s) 968
PsrI GAACNNNNNNTAC 2 cut(s) 777, 809
PstNI CAGNNNCTG 1 cut(s) 980
PvuII CAGCTG 1 cut(s) 662
RsaI GTAC 2 cut(s) 507, 912
RsaNI GTAC 2 cut(s) 506, 911
SaqAI TTAA 6 cut(s) 293, 365, 645, 771, 839, 869
SatI GCNGC 1 cut(s) 822
Sau3AI GATC 1 cut(s) 256
Sau96I GGNCC 1 cut(s) 968
SchI GAGTC 1 cut(s) 559
ScrFI CCNGG 1 cut(s) 981
SduI GDGCHC 1 cut(s) 460
SexAI ACCWGGT 1 cut(s) 979
SfaNI GCATC 1 cut(s) 239
SfcI CTRYAG 4 cut(s) 423, 759, 972, 1015
SinI GGWCC 1 cut(s) 968
SmlI CTYRAG 2 cut(s) 860, 876
SmoI CTYRAG 2 cut(s) 860, 876
SsiI CCGC 4 cut(s) 58, 161, 493, 726
SspMI CTAG 2 cut(s) 201, 653
StyD4I CCNGG 1 cut(s) 979
StyI CCWWGG 2 cut(s) 85, 826
TaaI ACNGT 3 cut(s) 104, 207, 563
TaiI ACGT 2 cut(s) 34, 813
TaqI TCGA 1 cut(s) 584
TfiI GAWTC 3 cut(s) 314, 451, 586
Tru1I TTAA 6 cut(s) 293, 365, 645, 771, 839, 869
Tru9I TTAA 6 cut(s) 293, 365, 645, 771, 839, 869
TscAI CASTG 4 cut(s) 109, 212, 568, 921
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 1 cut(s) 821
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 917
TspRI CASTG 4 cut(s) 109, 212, 568, 921
VneI GTGCAC 1 cut(s) 456
VpaK11BI GGWCC 1 cut(s) 968
XapI RAATTY 3 cut(s) 154, 555, 832
XbaI TCTAGA 1 cut(s) 200
XcmI CCANNNNNNNNNTGG 1 cut(s) 92
XmiI GTMKAC 1 cut(s) 532
XmnI GAANNNNTTC 2 cut(s) 53, 338
XspI CTAG 2 cut(s) 201, 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.