Rroxscaffold_2G00130620

phosphoglycerate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001245
Physical Location & Seq
Reverse (-)
66846580 .. 66850981
4402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00130620.1

Sequence Viewer

Length: 1065 bp
ATGTTTCTTTCCTCTTTGTTTGCTGTGTTGTCTCATGTATCTAGGAGTTCTTCTCAAATGGTTGCCACTGCATTTCGCCACCCCATTGGGATCATTCAGCTCCATGGTTCTGTTAGTGATGCTGGCTCTGCTAGCAAATGTGGGCATTCATCTTTCAGATTTATCTCCAAGAATTTTGCTGTTGATGTTGCTTTGCTTAGGAAAGGACATTGTAGCTATAGACAGGGTCAACAGCATGTAGTTCGTGCATTATCTTCTCAGGCTCAAACTACTTGTCCAAGTTCATCCGGCTCCCATGTTGAGAGTGCCTTGATATTAATTCGTCATGGCGAATCTATGTGGAATGAGAAGAACTTGTTCACTGGTTGTGTTGATGTGCCTTTAACAAAGAGAGGTGTAGATGAAGCAATAGAAGCTGGTAAGAGAATTAGCAACATCCCTGTAGATATGATTTATACATCTTCGCTGATTCGTGCGCAGATGACAGCCATGCTTACCATGACCCAACACCACTGCAAGAAGGTTCCAATCATTATGCACAACGAGAATCGACAGGCAAAGTCATGGAGTCAAATCTACAGTGAAGATACGGAGAAGCAATCAATTCCAGTTATAACTGCTTGGCAACTGAATGAAAGAATGTATGGTGAATTACAGGGTCTCAATAAGCTAGAGACAGCTGAAAGATATGGAAAGGAACAAGTGCATGAGTGGCGTAGGAGTTACAATAGTCCTCCTCCCAATGGTGAGAGCTTGGAAATGTGTTCCCATAGAGCTGTAGCTTATTTTAAAGACCATATTCAACCACAACTACAATCTGGAAGGCATGTGATGGTTGCTGCCCATGGGAATTCATTAAGGTCTATAATCATGTATCTCGAGAAATTAACTTCTCTAGAGGTTGTTAACTTAGAATTACCAACTGGGCTACCACTGCTTTATATCTATAAGGAGGGGAAATTTATGAGGAGGGGAAGTCCAGTTGGACCTACAGAAGCTGGTGTTTATGCTTATACTGAGAGCTTGGCCCTTTACAAGCAAACGTTGGATGAAAAGTTGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko05230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map05230
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

354

Amino Acids

39.7

Weight (kDa)

9.01

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 104 - 175 9.1e-18 Histidine phosphatase superfamily (branch 1)
His_Phos_1 PF00300 199 - 306 9.9e-14 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 614
Acc16I TGCGCA 1 cut(s) 477
AclI AACGTT 1 cut(s) 1043
AclWI GGATC 1 cut(s) 98
AcsI RAATTY 3 cut(s) 172, 850, 959
AfiI CCNNNNNNNGG 1 cut(s) 743
AgsI TTSAA 1 cut(s) 803
Alw26I GTCTC 3 cut(s) 36, 665, 668
AlwI GGATC 1 cut(s) 98
AlwNI CAGNNNCTG 1 cut(s) 998
Ama87I CYCGRG 1 cut(s) 878
AoxI GGCC 1 cut(s) 1026
ApeKI GCWGC 1 cut(s) 839
ApoI RAATTY 3 cut(s) 172, 850, 959
ArsI GACNNNNNNTTYG 2 cut(s) 259, 291
AseI ATTAAT 1 cut(s) 317
Asp700I GAANNNNTTC 1 cut(s) 356
AspLEI GCGC 1 cut(s) 478
AspS9I GGNCC 2 cut(s) 986, 1027
AsuHPI GGTGA 2 cut(s) 659, 758
AsuNHI GCTAGC 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 878
AvaII GGWCC 1 cut(s) 986
BbvI GCAGC 1 cut(s) 826
BccI CCATC 1 cut(s) 826
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BcoDI GTCTC 3 cut(s) 36, 665, 668
BfaI CTAG 4 cut(s) 42, 132, 671, 896
BfmI CTRYAG 5 cut(s) 217, 441, 577, 777, 990
BisI GCNGC 1 cut(s) 840
BlsI GCNGC 1 cut(s) 841
Bme18I GGWCC 1 cut(s) 986
BmeT110I CYCGRG 1 cut(s) 878
BmgT120I GGNCC 2 cut(s) 986, 1027
BmiI GGNNCC 2 cut(s) 292, 525
BmrI ACTGGG 1 cut(s) 933
BmsI GCATC 1 cut(s) 109
BmtI GCTAGC 1 cut(s) 135
BmuI ACTGGG 1 cut(s) 933
BplI GAGNNNNNCTC 2 cut(s) 37, 69
Bpu10I CCTNAGC 1 cut(s) 197
BsaI GGTCTC 1 cut(s) 665
BsaJI CCNNGG 2 cut(s) 103, 844
BsaXI ACNNNNNCTCC 2 cut(s) 961, 991
Bsc4I CCNNNNNNNGG 1 cut(s) 743
Bse1I ACTGG 4 cut(s) 367, 608, 928, 980
BseDI CCNNGG 2 cut(s) 103, 844
BseGI GGATG 3 cut(s) 284, 435, 1054
BseLI CCNNNNNNNGG 1 cut(s) 743
BseMII CTCAG 2 cut(s) 272, 1008
BseNI ACTGG 4 cut(s) 367, 608, 928, 980
BseRI GAGGAG 2 cut(s) 726, 982
BseXI GCAGC 1 cut(s) 826
BshFI GGCC 1 cut(s) 1028
BsiHKCI CYCGRG 1 cut(s) 878
BsiSI CCGG 1 cut(s) 288
BslI CCNNNNNNNGG 1 cut(s) 743
BsmAI GTCTC 3 cut(s) 36, 665, 668
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 1 cut(s) 1028
Bso31I GGTCTC 1 cut(s) 665
BsoBI CYCGRG 1 cut(s) 878
Bsp143I GATC 1 cut(s) 90
Bsp19I CCATGG 2 cut(s) 103, 844
BspANI GGCC 1 cut(s) 1028
BspCNI CTCAG 2 cut(s) 271, 1009
BspLI GGNNCC 2 cut(s) 292, 525
BspOI GCTAGC 1 cut(s) 135
BspPI GGATC 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 665
BsrI ACTGG 4 cut(s) 367, 608, 928, 980
BssECI CCNNGG 2 cut(s) 103, 844
BssMI GATC 1 cut(s) 90
BssT1I CCWWGG 2 cut(s) 103, 844
Bst4CI ACNGT 1 cut(s) 581
BstC8I GCNNGC 2 cut(s) 124, 133
BstDEI CTNAG 4 cut(s) 197, 258, 910, 1017
BstDSI CCRYGG 2 cut(s) 103, 844
BstF5I GGATG 3 cut(s) 284, 435, 1054
BstHHI GCGC 1 cut(s) 478
BstKTI GATC 1 cut(s) 93
BstMAI GTCTC 3 cut(s) 36, 665, 668
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 5 cut(s) 128, 132, 413, 712, 934
BstNSI RCATGY 2 cut(s) 239, 830
BstSFI CTRYAG 5 cut(s) 217, 441, 577, 777, 990
BstV1I GCAGC 1 cut(s) 826
BstXI CCANNNNNNTGG 1 cut(s) 86
BsuRI GGCC 1 cut(s) 1028
BtgI CCRYGG 2 cut(s) 103, 844
BtsCI GGATG 3 cut(s) 284, 435, 1054
BtsI GCAGTG 3 cut(s) 66, 511, 932
BtsIMutI CAGTG 5 cut(s) 66, 360, 511, 586, 932
Cac8I GCNNGC 2 cut(s) 124, 133
CaiI CAGNNNCTG 1 cut(s) 998
CfoI GCGC 1 cut(s) 478
Cfr13I GGNCC 2 cut(s) 986, 1027
DdeI CTNAG 4 cut(s) 197, 258, 910, 1017
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
DraI TTTAAA 1 cut(s) 790
Eco130I CCWWGG 2 cut(s) 103, 844
Eco31I GGTCTC 1 cut(s) 665
Eco47I GGWCC 1 cut(s) 986
Eco88I CYCGRG 1 cut(s) 878
EcoRI GAATTC 1 cut(s) 850
EcoT14I CCWWGG 2 cut(s) 103, 844
ErhI CCWWGG 2 cut(s) 103, 844
Fnu4HI GCNGC 1 cut(s) 840
FokI GGATG 3 cut(s) 271, 422, 1061
Fsp4HI GCNGC 1 cut(s) 840
FspBI CTAG 4 cut(s) 42, 132, 671, 896
FspI TGCGCA 1 cut(s) 477
GlaI GCGC 1 cut(s) 477
GluI GCNGC 1 cut(s) 840
HaeIII GGCC 1 cut(s) 1028
HapII CCGG 1 cut(s) 288
HhaI GCGC 1 cut(s) 478
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HincII GTYRAC 2 cut(s) 230, 907
HindII GTYRAC 2 cut(s) 230, 907
HinfI GANTC 4 cut(s) 332, 469, 547, 568
HpaI GTTAAC 1 cut(s) 907
HpaII CCGG 1 cut(s) 288
HphI GGTGA 2 cut(s) 659, 758
Hpy166II GTNNAC 3 cut(s) 230, 360, 907
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 4 cut(s) 819, 878, 880, 896
Hpy8I GTNNAC 3 cut(s) 230, 360, 907
HpyAV CCTTC 2 cut(s) 514, 816
HpyCH4III ACNGT 1 cut(s) 581
HpyCH4IV ACGT 1 cut(s) 1043
HpyCH4V TGCA 5 cut(s) 71, 248, 516, 538, 706
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 132, 413, 712, 934
HpyF3I CTNAG 4 cut(s) 197, 258, 910, 1017
HpySE526I ACGT 1 cut(s) 1043
HspAI GCGC 1 cut(s) 476
KspAI GTTAAC 1 cut(s) 907
Kzo9I GATC 1 cut(s) 90
LmnI GCTCC 2 cut(s) 105, 296
Lsp1109I GCAGC 1 cut(s) 826
LweI GCATC 1 cut(s) 109
MaeI CTAG 4 cut(s) 42, 132, 671, 896
MaeII ACGT 1 cut(s) 1043
MaeIII GTNAC 1 cut(s) 722
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 5 cut(s) 42, 246, 361, 453, 596
MluCI AATT 9 cut(s) 172, 318, 426, 603, 650, 850, 884, 914, 959
MlyI GAGTC 1 cut(s) 577
MmeI TCCRAC 2 cut(s) 964, 1026
MnlI CCTC 8 cut(s) 22, 386, 744, 747, 892, 946, 960, 963
MroXI GAANNNNTTC 1 cut(s) 356
MseI TTAA 6 cut(s) 317, 383, 789, 857, 887, 906
MspA1I CMGCKG 1 cut(s) 680
MspI CCGG 1 cut(s) 288
Mva1269I GAATGC 1 cut(s) 145
MwoI GCNNNNNNNGC 5 cut(s) 128, 132, 413, 712, 934
NcoI CCATGG 2 cut(s) 103, 844
NdeII GATC 1 cut(s) 90
NheI GCTAGC 1 cut(s) 131
NlaIV GGNNCC 2 cut(s) 292, 525
NsbI TGCGCA 1 cut(s) 477
NspI RCATGY 2 cut(s) 239, 830
PaeR7I CTCGAG 1 cut(s) 878
PctI GAATGC 1 cut(s) 145
PdmI GAANNNNTTC 1 cut(s) 356
PfeI GAWTC 3 cut(s) 332, 469, 547
PflFI GACNNNGTC 1 cut(s) 225
PkrI GCNGC 1 cut(s) 841
PleI GAGTC 1 cut(s) 576
PpsI GAGTC 1 cut(s) 576
PshBI ATTAAT 1 cut(s) 317
PsiI TTATAA 1 cut(s) 614
Psp1406I AACGTT 1 cut(s) 1043
PspN4I GGNNCC 2 cut(s) 292, 525
PspPI GGNCC 2 cut(s) 986, 1027
PstNI CAGNNNCTG 1 cut(s) 998
PsyI GACNNNGTC 1 cut(s) 225
PvuII CAGCTG 1 cut(s) 680
SaqAI TTAA 6 cut(s) 317, 383, 789, 857, 887, 906
SatI GCNGC 1 cut(s) 840
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 2 cut(s) 986, 1027
SchI GAGTC 1 cut(s) 577
SfaNI GCATC 1 cut(s) 109
SfcI CTRYAG 5 cut(s) 217, 441, 577, 777, 990
Sfr274I CTCGAG 1 cut(s) 878
SinI GGWCC 1 cut(s) 986
SlaI CTCGAG 1 cut(s) 878
SmlI CTYRAG 1 cut(s) 878
SmoI CTYRAG 1 cut(s) 878
Sse9I AATT 9 cut(s) 172, 318, 426, 603, 650, 850, 884, 914, 959
SspMI CTAG 4 cut(s) 42, 132, 671, 896
StyI CCWWGG 2 cut(s) 103, 844
TaaI ACNGT 1 cut(s) 581
TaiI ACGT 1 cut(s) 1046
TaqI TCGA 2 cut(s) 550, 879
TasI AATT 9 cut(s) 172, 318, 426, 603, 650, 850, 884, 914, 959
TfiI GAWTC 3 cut(s) 332, 469, 547
Tru1I TTAA 6 cut(s) 317, 383, 789, 857, 887, 906
Tru9I TTAA 6 cut(s) 317, 383, 789, 857, 887, 906
TscAI CASTG 5 cut(s) 73, 367, 518, 586, 939
TseI GCWGC 1 cut(s) 839
TspDTI ATGAA 6 cut(s) 138, 273, 417, 648, 843, 1065
TspGWI ACGGA 1 cut(s) 605
TspRI CASTG 5 cut(s) 73, 367, 518, 586, 939
Tth111I GACNNNGTC 1 cut(s) 225
VpaK11BI GGWCC 1 cut(s) 986
VspI ATTAAT 1 cut(s) 317
XapI RAATTY 3 cut(s) 172, 850, 959
XbaI TCTAGA 1 cut(s) 895
XceI RCATGY 2 cut(s) 239, 830
XhoI CTCGAG 1 cut(s) 878
XmnI GAANNNNTTC 1 cut(s) 356
XspI CTAG 4 cut(s) 42, 132, 671, 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.